Result of FASTA (ccds) for
pF1KB9488
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9488, 1133 aa
1>>>pF1KB9488 1133 - 1133 aa - 1133 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7072+/-0.00118; mu= 19.2857+/- 0.071
mean_var=66.4876+/-13.034, 0's: 0 Z-trim(101.2): 28 B-trim: 0 in 0/51
Lambda= 0.157291
statistics sampled from 6406 (6411) to 6406 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.547), E-opt: 0.2 (0.197), width: 16
Scan time: 3.190
The best scores are: opt bits E(32554)
CCDS34112.1 TRAPPC11 gene_id:60684|Hs108|chr4 (1133) 7575 1728.9 0
CCDS47166.1 TRAPPC11 gene_id:60684|Hs108|chr4 (1086) 7132 1628.4 0
>>CCDS34112.1 TRAPPC11 gene_id:60684|Hs108|chr4 (1133 aa)
initn: 7575 init1: 7575 opt: 7575 Z-score: 9279.7 bits: 1728.9 E(32554): 0
Smith-Waterman score: 7575; 100.0% identity (100.0% similar) in 1133 aa overlap (1-1133:1-1133)
10 20 30 40 50 60
pF1KB9 MSPTQWDFPVELCCRPMAFVTLTGLDVVYNAVHRAVWDAFCANRRADRVPISFKVLPGDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MSPTQWDFPVELCCRPMAFVTLTGLDVVYNAVHRAVWDAFCANRRADRVPISFKVLPGDH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 EYPKCRPKRTSYEWYIPKGILKTGWMNKHLNLVPALVVVFYELDWDEPQWKEKQSECATR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EYPKCRPKRTSYEWYIPKGILKTGWMNKHLNLVPALVVVFYELDWDEPQWKEKQSECATR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 VEIVRQSLQGRNTKVAVVLIQKKTPLPPGEDVIASERAAALCNACELSGKSLFVLPHTDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VEIVRQSLQGRNTKVAVVLIQKKTPLPPGEDVIASERAAALCNACELSGKSLFVLPHTDH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 LVGYIIRLENAFYEHAQTYYYTEIRRVKSHKEFLNKTTHQLLFVRHQFKIAFFSELKQDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LVGYIIRLENAFYEHAQTYYYTEIRRVKSHKEFLNKTTHQLLFVRHQFKIAFFSELKQDT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 QNALKNYRTAYNLVHELRAHETNILEIKTMAGFINYKICRLCFQHNTPLDAIAQFRKHID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QNALKNYRTAYNLVHELRAHETNILEIKTMAGFINYKICRLCFQHNTPLDAIAQFRKHID
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 LCKKKIGSAELSFEHDAWMSKQFQAFGDLFDEAIKLGLTAIQTQNPGFYYQQAAYYAQER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LCKKKIGSAELSFEHDAWMSKQFQAFGDLFDEAIKLGLTAIQTQNPGFYYQQAAYYAQER
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 KQLAKTLCNHEASVMYPNPDPLETQTGVLDFYGQRSWRQGILSFDLSDPEKEKVGILAIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KQLAKTLCNHEASVMYPNPDPLETQTGVLDFYGQRSWRQGILSFDLSDPEKEKVGILAIQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 LKERNVVHSEIIITLLSNAVAQFKKYKCPRMKSHLMVQMGEEYYYAKDYTKALKLLDYVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LKERNVVHSEIIITLLSNAVAQFKKYKCPRMKSHLMVQMGEEYYYAKDYTKALKLLDYVM
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 CDYRSEGWWTLLTSVLTTALKCSYLMAQLKDYITYSLELLGRASTLKDDQKSRIEKNLIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 CDYRSEGWWTLLTSVLTTALKCSYLMAQLKDYITYSLELLGRASTLKDDQKSRIEKNLIN
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 VLMNESPDPEPDCDILAVKTAQKLWADRISLAGSNIFTIGVQDFVPFVQCKAKFHAPSFH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VLMNESPDPEPDCDILAVKTAQKLWADRISLAGSNIFTIGVQDFVPFVQCKAKFHAPSFH
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 VDVPVQFDIYLKADCPHPIRFSKLCVSFNNQEYNQFCVIEEASKANEVLENLTQGKMCLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VDVPVQFDIYLKADCPHPIRFSKLCVSFNNQEYNQFCVIEEASKANEVLENLTQGKMCLV
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB9 PGKTRKLLFKFVAKTEDVGKKIEITSVDLALGNETGRCVVLNWQGGGGDAASSQEALQAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PGKTRKLLFKFVAKTEDVGKKIEITSVDLALGNETGRCVVLNWQGGGGDAASSQEALQAA
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB9 RSFKRRPKLPDNEVHWDSIIIQASTMIISRVPNISVHLLHEPPALTNEMYCLVVTVQSHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RSFKRRPKLPDNEVHWDSIIIQASTMIISRVPNISVHLLHEPPALTNEMYCLVVTVQSHE
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB9 KTQIRDVKLTAGLKPGQDANLTQKTHVTLHGTELCDESYPALLTDIPVGDLHPGEQLEKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KTQIRDVKLTAGLKPGQDANLTQKTHVTLHGTELCDESYPALLTDIPVGDLHPGEQLEKM
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB9 LYVRCGTVGSRMFLVYVSYLINTTVEEKEIVCKCHKDETVTIETVFPFDVAVKFVSTKFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LYVRCGTVGSRMFLVYVSYLINTTVEEKEIVCKCHKDETVTIETVFPFDVAVKFVSTKFE
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB9 HLERVYADIPFLLMTDLLSASPWALTIVSSELQLAPSMTTVDQLESQVDNVILQTGESAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 HLERVYADIPFLLMTDLLSASPWALTIVSSELQLAPSMTTVDQLESQVDNVILQTGESAS
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KB9 ECFCLQCPSLGNIEGGVATGHYIISWKRTSAMENIPIITTVITLPHVIVENIPLHVNADL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ECFCLQCPSLGNIEGGVATGHYIISWKRTSAMENIPIITTVITLPHVIVENIPLHVNADL
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KB9 PSFGRVRESLPVKYHLQNKTDLVQDVEISVEPSDAFMFSGLKQIRLRILPGTEQEMLYNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PSFGRVRESLPVKYHLQNKTDLVQDVEISVEPSDAFMFSGLKQIRLRILPGTEQEMLYNF
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130
pF1KB9 YPLMAGYQQLPSLNINLLRFPNFTNQLLRRFIPTSIFVKPQGRLMDDTSIAAA
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 YPLMAGYQQLPSLNINLLRFPNFTNQLLRRFIPTSIFVKPQGRLMDDTSIAAA
1090 1100 1110 1120 1130
>>CCDS47166.1 TRAPPC11 gene_id:60684|Hs108|chr4 (1086 aa)
initn: 7132 init1: 7132 opt: 7132 Z-score: 8736.7 bits: 1628.4 E(32554): 0
Smith-Waterman score: 7132; 100.0% identity (100.0% similar) in 1066 aa overlap (1-1066:1-1066)
10 20 30 40 50 60
pF1KB9 MSPTQWDFPVELCCRPMAFVTLTGLDVVYNAVHRAVWDAFCANRRADRVPISFKVLPGDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MSPTQWDFPVELCCRPMAFVTLTGLDVVYNAVHRAVWDAFCANRRADRVPISFKVLPGDH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 EYPKCRPKRTSYEWYIPKGILKTGWMNKHLNLVPALVVVFYELDWDEPQWKEKQSECATR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EYPKCRPKRTSYEWYIPKGILKTGWMNKHLNLVPALVVVFYELDWDEPQWKEKQSECATR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 VEIVRQSLQGRNTKVAVVLIQKKTPLPPGEDVIASERAAALCNACELSGKSLFVLPHTDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VEIVRQSLQGRNTKVAVVLIQKKTPLPPGEDVIASERAAALCNACELSGKSLFVLPHTDH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 LVGYIIRLENAFYEHAQTYYYTEIRRVKSHKEFLNKTTHQLLFVRHQFKIAFFSELKQDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LVGYIIRLENAFYEHAQTYYYTEIRRVKSHKEFLNKTTHQLLFVRHQFKIAFFSELKQDT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 QNALKNYRTAYNLVHELRAHETNILEIKTMAGFINYKICRLCFQHNTPLDAIAQFRKHID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QNALKNYRTAYNLVHELRAHETNILEIKTMAGFINYKICRLCFQHNTPLDAIAQFRKHID
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 LCKKKIGSAELSFEHDAWMSKQFQAFGDLFDEAIKLGLTAIQTQNPGFYYQQAAYYAQER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LCKKKIGSAELSFEHDAWMSKQFQAFGDLFDEAIKLGLTAIQTQNPGFYYQQAAYYAQER
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 KQLAKTLCNHEASVMYPNPDPLETQTGVLDFYGQRSWRQGILSFDLSDPEKEKVGILAIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KQLAKTLCNHEASVMYPNPDPLETQTGVLDFYGQRSWRQGILSFDLSDPEKEKVGILAIQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 LKERNVVHSEIIITLLSNAVAQFKKYKCPRMKSHLMVQMGEEYYYAKDYTKALKLLDYVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LKERNVVHSEIIITLLSNAVAQFKKYKCPRMKSHLMVQMGEEYYYAKDYTKALKLLDYVM
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 CDYRSEGWWTLLTSVLTTALKCSYLMAQLKDYITYSLELLGRASTLKDDQKSRIEKNLIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 CDYRSEGWWTLLTSVLTTALKCSYLMAQLKDYITYSLELLGRASTLKDDQKSRIEKNLIN
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 VLMNESPDPEPDCDILAVKTAQKLWADRISLAGSNIFTIGVQDFVPFVQCKAKFHAPSFH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VLMNESPDPEPDCDILAVKTAQKLWADRISLAGSNIFTIGVQDFVPFVQCKAKFHAPSFH
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 VDVPVQFDIYLKADCPHPIRFSKLCVSFNNQEYNQFCVIEEASKANEVLENLTQGKMCLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VDVPVQFDIYLKADCPHPIRFSKLCVSFNNQEYNQFCVIEEASKANEVLENLTQGKMCLV
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB9 PGKTRKLLFKFVAKTEDVGKKIEITSVDLALGNETGRCVVLNWQGGGGDAASSQEALQAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PGKTRKLLFKFVAKTEDVGKKIEITSVDLALGNETGRCVVLNWQGGGGDAASSQEALQAA
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB9 RSFKRRPKLPDNEVHWDSIIIQASTMIISRVPNISVHLLHEPPALTNEMYCLVVTVQSHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RSFKRRPKLPDNEVHWDSIIIQASTMIISRVPNISVHLLHEPPALTNEMYCLVVTVQSHE
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB9 KTQIRDVKLTAGLKPGQDANLTQKTHVTLHGTELCDESYPALLTDIPVGDLHPGEQLEKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KTQIRDVKLTAGLKPGQDANLTQKTHVTLHGTELCDESYPALLTDIPVGDLHPGEQLEKM
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB9 LYVRCGTVGSRMFLVYVSYLINTTVEEKEIVCKCHKDETVTIETVFPFDVAVKFVSTKFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LYVRCGTVGSRMFLVYVSYLINTTVEEKEIVCKCHKDETVTIETVFPFDVAVKFVSTKFE
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB9 HLERVYADIPFLLMTDLLSASPWALTIVSSELQLAPSMTTVDQLESQVDNVILQTGESAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 HLERVYADIPFLLMTDLLSASPWALTIVSSELQLAPSMTTVDQLESQVDNVILQTGESAS
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KB9 ECFCLQCPSLGNIEGGVATGHYIISWKRTSAMENIPIITTVITLPHVIVENIPLHVNADL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ECFCLQCPSLGNIEGGVATGHYIISWKRTSAMENIPIITTVITLPHVIVENIPLHVNADL
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KB9 PSFGRVRESLPVKYHLQNKTDLVQDVEISVEPSDAFMFSGLKQIRLRILPGTEQEMLYNF
::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PSFGRVRESLPVKYHLQNKTDLVQDVEISVEPSDAFMFSGLKQIRLPAQAFYTYQYFCQA
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130
pF1KB9 YPLMAGYQQLPSLNINLLRFPNFTNQLLRRFIPTSIFVKPQGRLMDDTSIAAA
CCDS47 TGSTHG
1133 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 23:53:42 2016 done: Thu Nov 3 23:53:42 2016
Total Scan time: 3.190 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]