FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9483, 857 aa
  1>>>pF1KB9483 857 - 857 aa - 857 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2326+/-0.00131; mu= 8.7471+/- 0.079
 mean_var=214.4540+/-42.022, 0's: 0 Z-trim(107.1): 25  B-trim: 4 in 1/52
 Lambda= 0.087580
 statistics sampled from 9379 (9386) to 9379 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.616), E-opt: 0.2 (0.288), width:  16
 Scan time:  2.510

The best scores are:                                      opt bits E(32554)
CCDS2316.1 GTF3C3 gene_id:9330|Hs108|chr2          ( 886) 2809 368.9 2.2e-101
CCDS56153.1 GTF3C3 gene_id:9330|Hs108|chr2         ( 413) 2620 344.7 1.9e-94


>>CCDS2316.1 GTF3C3 gene_id:9330|Hs108|chr2               (886 aa)
 initn: 5574 init1: 2800 opt: 2809  Z-score: 1933.7  bits: 368.9 E(32554): 2.2e-101
Smith-Waterman score: 5520; 96.7% identity (96.7% similar) in 886 aa overlap (1-857:1-886)

               10        20        30        40        50        60
pF1KB9 MSGFSPELIDYLEGKISFEEFERRREERKTREKKSLQEKGKLSAEENPDDSEVPSSSGIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 MSGFSPELIDYLEGKISFEEFERRREERKTREKKSLQEKGKLSAEENPDDSEVPSSSGIN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 STKSQDKDVNEGETSDGVRKSVHKVFASMLGENEDDEEEEEEEEEEEEEEETPEQPTAGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 STKSQDKDVNEGETSDGVRKSVHKVFASMLGENEDDEEEEEEEEEEEEEEETPEQPTAGD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 VFVLEMVLNRETKKMMKEKRPRSKLPRALRGLMGEANIRFARGEREEAILMCMEIIRQAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 VFVLEMVLNRETKKMMKEKRPRSKLPRALRGLMGEANIRFARGEREEAILMCMEIIRQAP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 LAYEPFSTLAMIYEDQGDMEKSLQFELIAAHLNPSDTEEWVRLAEMSLEQDNIKQAIFCY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 LAYEPFSTLAMIYEDQGDMEKSLQFELIAAHLNPSDTEEWVRLAEMSLEQDNIKQAIFCY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 TKALKYEPTNVRYLWERSSLYEQMGDHKMAMDGYRRILNLLSPSDGERFMQLARDMAKSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 TKALKYEPTNVRYLWERSSLYEQMGDHKMAMDGYRRILNLLSPSDGERFMQLARDMAKSY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 YEANDVTSAINIIDEAFSKHQGLVSMEDVNIAAELYISNKQYDKALEIITDFSGIVLEKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 YEANDVTSAINIIDEAFSKHQGLVSMEDVNIAAELYISNKQYDKALEIITDFSGIVLEKK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 TSEEGTSEENKAPENVTCTIPDGVPIDITVKLMVCLVHLNILEPLNPLLTTLVEQNPEDM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 TSEEGTSEENKAPENVTCTIPDGVPIDITVKLMVCLVHLNILEPLNPLLTTLVEQNPEDM
              370       380       390       400       410       420

              430                                    440       450 
pF1KB9 GDLYLDVAEAFLDV-----------------------------ECLKALGYMERAAESYG
       ::::::::::::::                             :::::::::::::::::
CCDS23 GDLYLDVAEAFLDVGEYNSALPLLSALVCSERYNLAVVWLRHAECLKALGYMERAAESYG
              430       440       450       460       470       480

             460       470       480       490       500       510 
pF1KB9 KVVDLAPLHLDARISLSTLQQQLGQPEKALEALEPMYDPDTLAQDANAAQQELKLLLHRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 KVVDLAPLHLDARISLSTLQQQLGQPEKALEALEPMYDPDTLAQDANAAQQELKLLLHRS
              490       500       510       520       530       540

             520       530       540       550       560       570 
pF1KB9 TLLFSQGKMYGYVDTLLTMLAMLLKVAMNRAQVCLISSSKSGERHLYLIKVSRDKISDSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 TLLFSQGKMYGYVDTLLTMLAMLLKVAMNRAQVCLISSSKSGERHLYLIKVSRDKISDSN
              550       560       570       580       590       600

             580       590       600       610       620       630 
pF1KB9 DQESANCDAKAIFAVLTSVLTKDDWWNLLLKAIYSLCDLSRFQEAELLVDSSLEYYSFYD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 DQESANCDAKAIFAVLTSVLTKDDWWNLLLKAIYSLCDLSRFQEAELLVDSSLEYYSFYD
              610       620       630       640       650       660

             640       650       660       670       680       690 
pF1KB9 DRQKRKELEYFGLSAAILDKNFRKAYNYIRIMVMENVNKPQLWNIFNQVTMHSQDVRHHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 DRQKRKELEYFGLSAAILDKNFRKAYNYIRIMVMENVNKPQLWNIFNQVTMHSQDVRHHR
              670       680       690       700       710       720

             700       710       720       730       740       750 
pF1KB9 FCLRLMLKNPENHALCVLNGHNAFVSGSFKHALGQYVQAFRTHPDEPLYSFCIGLTFIHM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 FCLRLMLKNPENHALCVLNGHNAFVSGSFKHALGQYVQAFRTHPDEPLYSFCIGLTFIHM
              730       740       750       760       770       780

             760       770       780       790       800       810 
pF1KB9 ASQKYVLRRHALIVQGFSFLNRYLSLRGPCQESFYNLGRGLHQLGLIHLAIHYYQKALEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 ASQKYVLRRHALIVQGFSFLNRYLSLRGPCQESFYNLGRGLHQLGLIHLAIHYYQKALEL
              790       800       810       820       830       840

             820       830       840       850       
pF1KB9 PPLVVEGIELDQLDLRRDIAYNLSLIYQSSGNTGMAQTLLYTYCSI
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 PPLVVEGIELDQLDLRRDIAYNLSLIYQSSGNTGMAQTLLYTYCSI
              850       860       870       880      

>>CCDS56153.1 GTF3C3 gene_id:9330|Hs108|chr2              (413 aa)
 initn: 2620 init1: 2620 opt: 2620  Z-score: 1809.0  bits: 344.7 E(32554): 1.9e-94
Smith-Waterman score: 2620; 100.0% identity (100.0% similar) in 406 aa overlap (1-406:1-406)

               10        20        30        40        50        60
pF1KB9 MSGFSPELIDYLEGKISFEEFERRREERKTREKKSLQEKGKLSAEENPDDSEVPSSSGIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MSGFSPELIDYLEGKISFEEFERRREERKTREKKSLQEKGKLSAEENPDDSEVPSSSGIN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 STKSQDKDVNEGETSDGVRKSVHKVFASMLGENEDDEEEEEEEEEEEEEEETPEQPTAGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 STKSQDKDVNEGETSDGVRKSVHKVFASMLGENEDDEEEEEEEEEEEEEEETPEQPTAGD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 VFVLEMVLNRETKKMMKEKRPRSKLPRALRGLMGEANIRFARGEREEAILMCMEIIRQAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 VFVLEMVLNRETKKMMKEKRPRSKLPRALRGLMGEANIRFARGEREEAILMCMEIIRQAP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 LAYEPFSTLAMIYEDQGDMEKSLQFELIAAHLNPSDTEEWVRLAEMSLEQDNIKQAIFCY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 LAYEPFSTLAMIYEDQGDMEKSLQFELIAAHLNPSDTEEWVRLAEMSLEQDNIKQAIFCY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 TKALKYEPTNVRYLWERSSLYEQMGDHKMAMDGYRRILNLLSPSDGERFMQLARDMAKSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 TKALKYEPTNVRYLWERSSLYEQMGDHKMAMDGYRRILNLLSPSDGERFMQLARDMAKSY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 YEANDVTSAINIIDEAFSKHQGLVSMEDVNIAAELYISNKQYDKALEIITDFSGIVLEKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 YEANDVTSAINIIDEAFSKHQGLVSMEDVNIAAELYISNKQYDKALEIITDFSGIVLEKK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 TSEEGTSEENKAPENVTCTIPDGVPIDITVKLMVCLVHLNILEPLNPLLTTLVEQNPEDM
       ::::::::::::::::::::::::::::::::::::::::::::::              
CCDS56 TSEEGTSEENKAPENVTCTIPDGVPIDITVKLMVCLVHLNILEPLNVCNKICT       
              370       380       390       400       410          

              430       440       450       460       470       480
pF1KB9 GDLYLDVAEAFLDVECLKALGYMERAAESYGKVVDLAPLHLDARISLSTLQQQLGQPEKA




857 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:50:07 2016 done: Thu Nov  3 23:50:08 2016
 Total Scan time:  2.510 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]