FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9482, 517 aa
  1>>>pF1KB9482 517 - 517 aa - 517 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.8522+/-0.000433; mu= -10.2418+/- 0.027
 mean_var=421.9565+/-84.818, 0's: 0 Z-trim(123.1): 17  B-trim: 890 in 1/57
 Lambda= 0.062437
 statistics sampled from 42194 (42226) to 42194 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.782), E-opt: 0.2 (0.495), width:  16
 Scan time: 11.500

The best scores are:                                      opt bits E(85289)
NP_002087 (OMIM: 189968) general transcription fac ( 517) 3385 319.0 2.1e-86


>>NP_002087 (OMIM: 189968) general transcription factor   (517 aa)
 initn: 3385 init1: 3385 opt: 3385  Z-score: 1672.3  bits: 319.0 E(85289): 2.1e-86
Smith-Waterman score: 3385; 100.0% identity (100.0% similar) in 517 aa overlap (1-517:1-517)

               10        20        30        40        50        60
pF1KB9 MAALGPSSQNVTEYVVRVPKNTTKKYNIMAFNAADKVNFATWNQARLERDLSNKKIYQEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MAALGPSSQNVTEYVVRVPKNTTKKYNIMAFNAADKVNFATWNQARLERDLSNKKIYQEE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 EMPESGAGSEFNRKLREEARRKKYGIVLKEFRPEDQPWLLRVNGKSGRKFKGIKKGGVTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 EMPESGAGSEFNRKLREEARRKKYGIVLKEFRPEDQPWLLRVNGKSGRKFKGIKKGGVTE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 NTSYYIFTQCPDGAFEAFPVHNWYNFTPLARHRTLTAEEAEEEWERRNKVLNHFSIMQQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 NTSYYIFTQCPDGAFEAFPVHNWYNFTPLARHRTLTAEEAEEEWERRNKVLNHFSIMQQR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 RLKDQDQDEDEEEKEKRGRRKASELRIHDLEDDLEMSSDASDASGEEGGRVPKAKKKAPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 RLKDQDQDEDEEEKEKRGRRKASELRIHDLEDDLEMSSDASDASGEEGGRVPKAKKKAPL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 AKGGRKKKKKKGSDDEAFEDSDDGDFEGQEVDYMSDGSSSSQEEPESKAKAPQQEEGPKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 AKGGRKKKKKKGSDDEAFEDSDDGDFEGQEVDYMSDGSSSSQEEPESKAKAPQQEEGPKG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 VDEQSDSSEESEEEKPPEEDKEEEEEKKAPTPQEKKRRKDSSEESDSSEESDIDSEASSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 VDEQSDSSEESEEEKPPEEDKEEEEEKKAPTPQEKKRRKDSSEESDSSEESDIDSEASSA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 LFMAKKKTPPKRERKPSGGSSRGNSRPGTPSAEGGSTSSTLRAAASKLEQGKRVSEMPAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LFMAKKKTPPKRERKPSGGSSRGNSRPGTPSAEGGSTSSTLRAAASKLEQGKRVSEMPAA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 KRLRLDTGPQSLSGKSTPQPPSGKTTPNSGDVQVTEDAVRRYLTRKPMTTKDLLKKFQTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 KRLRLDTGPQSLSGKSTPQPPSGKTTPNSGDVQVTEDAVRRYLTRKPMTTKDLLKKFQTK
              430       440       450       460       470       480

              490       500       510       
pF1KB9 KTGLSSEQTVNVLAQILKRLNPERKMINDKMHFSLKE
       :::::::::::::::::::::::::::::::::::::
NP_002 KTGLSSEQTVNVLAQILKRLNPERKMINDKMHFSLKE
              490       500       510       




517 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:48:53 2016 done: Thu Nov  3 23:48:55 2016
 Total Scan time: 11.500 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]