FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9482, 517 aa
  1>>>pF1KB9482 517 - 517 aa - 517 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.5656+/-0.000999; mu= -2.3264+/- 0.061
 mean_var=379.9350+/-74.818, 0's: 0 Z-trim(114.9): 24  B-trim: 0 in 0/55
 Lambda= 0.065799
 statistics sampled from 15424 (15443) to 15424 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.474), width:  16
 Scan time:  4.210

The best scores are:                                      opt bits E(32554)
CCDS12165.1 GTF2F1 gene_id:2962|Hs108|chr19        ( 517) 3385 335.2 1.1e-91


>>CCDS12165.1 GTF2F1 gene_id:2962|Hs108|chr19             (517 aa)
 initn: 3385 init1: 3385 opt: 3385  Z-score: 1759.8  bits: 335.2 E(32554): 1.1e-91
Smith-Waterman score: 3385; 100.0% identity (100.0% similar) in 517 aa overlap (1-517:1-517)

               10        20        30        40        50        60
pF1KB9 MAALGPSSQNVTEYVVRVPKNTTKKYNIMAFNAADKVNFATWNQARLERDLSNKKIYQEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAALGPSSQNVTEYVVRVPKNTTKKYNIMAFNAADKVNFATWNQARLERDLSNKKIYQEE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 EMPESGAGSEFNRKLREEARRKKYGIVLKEFRPEDQPWLLRVNGKSGRKFKGIKKGGVTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EMPESGAGSEFNRKLREEARRKKYGIVLKEFRPEDQPWLLRVNGKSGRKFKGIKKGGVTE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 NTSYYIFTQCPDGAFEAFPVHNWYNFTPLARHRTLTAEEAEEEWERRNKVLNHFSIMQQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 NTSYYIFTQCPDGAFEAFPVHNWYNFTPLARHRTLTAEEAEEEWERRNKVLNHFSIMQQR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 RLKDQDQDEDEEEKEKRGRRKASELRIHDLEDDLEMSSDASDASGEEGGRVPKAKKKAPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RLKDQDQDEDEEEKEKRGRRKASELRIHDLEDDLEMSSDASDASGEEGGRVPKAKKKAPL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 AKGGRKKKKKKGSDDEAFEDSDDGDFEGQEVDYMSDGSSSSQEEPESKAKAPQQEEGPKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AKGGRKKKKKKGSDDEAFEDSDDGDFEGQEVDYMSDGSSSSQEEPESKAKAPQQEEGPKG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 VDEQSDSSEESEEEKPPEEDKEEEEEKKAPTPQEKKRRKDSSEESDSSEESDIDSEASSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VDEQSDSSEESEEEKPPEEDKEEEEEKKAPTPQEKKRRKDSSEESDSSEESDIDSEASSA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 LFMAKKKTPPKRERKPSGGSSRGNSRPGTPSAEGGSTSSTLRAAASKLEQGKRVSEMPAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LFMAKKKTPPKRERKPSGGSSRGNSRPGTPSAEGGSTSSTLRAAASKLEQGKRVSEMPAA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 KRLRLDTGPQSLSGKSTPQPPSGKTTPNSGDVQVTEDAVRRYLTRKPMTTKDLLKKFQTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KRLRLDTGPQSLSGKSTPQPPSGKTTPNSGDVQVTEDAVRRYLTRKPMTTKDLLKKFQTK
              430       440       450       460       470       480

              490       500       510       
pF1KB9 KTGLSSEQTVNVLAQILKRLNPERKMINDKMHFSLKE
       :::::::::::::::::::::::::::::::::::::
CCDS12 KTGLSSEQTVNVLAQILKRLNPERKMINDKMHFSLKE
              490       500       510       




517 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:48:52 2016 done: Thu Nov  3 23:48:53 2016
 Total Scan time:  4.210 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]