FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9477, 333 aa
  1>>>pF1KB9477 333 - 333 aa - 333 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6197+/-0.000792; mu= 8.0192+/- 0.048
 mean_var=169.5051+/-33.746, 0's: 0 Z-trim(114.8): 9  B-trim: 0 in 0/50
 Lambda= 0.098511
 statistics sampled from 15321 (15327) to 15321 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.471), width:  16
 Scan time:  3.150

The best scores are:                                      opt bits E(32554)
CCDS12310.1 GIPC1 gene_id:10755|Hs108|chr19        ( 333) 2231 328.3 5.3e-90
CCDS12311.1 GIPC1 gene_id:10755|Hs108|chr19        ( 236) 1553 231.8 4.1e-61
CCDS32871.1 GIPC3 gene_id:126326|Hs108|chr19       ( 312) 1288 194.3 1.1e-49
CCDS685.1 GIPC2 gene_id:54810|Hs108|chr1           ( 315) 1263 190.7 1.3e-48


>>CCDS12310.1 GIPC1 gene_id:10755|Hs108|chr19             (333 aa)
 initn: 2231 init1: 2231 opt: 2231  Z-score: 1729.3  bits: 328.3 E(32554): 5.3e-90
Smith-Waterman score: 2231; 100.0% identity (100.0% similar) in 333 aa overlap (1-333:1-333)

               10        20        30        40        50        60
pF1KB9 MPLGLGRRKKAPPLVENEEAEPGRGGLGVGEPGPLGGGGSGGPQMGLPPPPPALRPRLVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MPLGLGRRKKAPPLVENEEAEPGRGGLGVGEPGPLGGGGSGGPQMGLPPPPPALRPRLVF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 HTQLAHGSPTGRIEGFTNVKELYGKIAEAFRLPTAEVMFCTLNTHKVDMDKLLGGQIGLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 HTQLAHGSPTGRIEGFTNVKELYGKIAEAFRLPTAEVMFCTLNTHKVDMDKLLGGQIGLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 DFIFAHVKGQRKEVEVFKSEDALGLTITDNGAGYAFIKRIKEGSVIDHIHLISVGDMIEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DFIFAHVKGQRKEVEVFKSEDALGLTITDNGAGYAFIKRIKEGSVIDHIHLISVGDMIEA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 INGQSLLGCRHYEVARLLKELPRGRTFTLKLTEPRKAFDMISQRSAGGRPGSGPQLGTGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 INGQSLLGCRHYEVARLLKELPRGRTFTLKLTEPRKAFDMISQRSAGGRPGSGPQLGTGR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 GTLRLRSRGPATVEDLPSAFEEKAIEKVDDLLESYMGIRDTELAATMVELGKDKRNPDEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GTLRLRSRGPATVEDLPSAFEEKAIEKVDDLLESYMGIRDTELAATMVELGKDKRNPDEL
              250       260       270       280       290       300

              310       320       330   
pF1KB9 AEALDERLGDFAFPDEFVFDVWGAIGDAKVGRY
       :::::::::::::::::::::::::::::::::
CCDS12 AEALDERLGDFAFPDEFVFDVWGAIGDAKVGRY
              310       320       330   

>>CCDS12311.1 GIPC1 gene_id:10755|Hs108|chr19             (236 aa)
 initn: 1553 init1: 1553 opt: 1553  Z-score: 1210.6  bits: 231.8 E(32554): 4.1e-61
Smith-Waterman score: 1553; 100.0% identity (100.0% similar) in 236 aa overlap (98-333:1-236)

        70        80        90       100       110       120       
pF1KB9 SPTGRIEGFTNVKELYGKIAEAFRLPTAEVMFCTLNTHKVDMDKLLGGQIGLEDFIFAHV
                                     ::::::::::::::::::::::::::::::
CCDS12                               MFCTLNTHKVDMDKLLGGQIGLEDFIFAHV
                                             10        20        30

       130       140       150       160       170       180       
pF1KB9 KGQRKEVEVFKSEDALGLTITDNGAGYAFIKRIKEGSVIDHIHLISVGDMIEAINGQSLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KGQRKEVEVFKSEDALGLTITDNGAGYAFIKRIKEGSVIDHIHLISVGDMIEAINGQSLL
               40        50        60        70        80        90

       190       200       210       220       230       240       
pF1KB9 GCRHYEVARLLKELPRGRTFTLKLTEPRKAFDMISQRSAGGRPGSGPQLGTGRGTLRLRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GCRHYEVARLLKELPRGRTFTLKLTEPRKAFDMISQRSAGGRPGSGPQLGTGRGTLRLRS
              100       110       120       130       140       150

       250       260       270       280       290       300       
pF1KB9 RGPATVEDLPSAFEEKAIEKVDDLLESYMGIRDTELAATMVELGKDKRNPDELAEALDER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RGPATVEDLPSAFEEKAIEKVDDLLESYMGIRDTELAATMVELGKDKRNPDELAEALDER
              160       170       180       190       200       210

       310       320       330   
pF1KB9 LGDFAFPDEFVFDVWGAIGDAKVGRY
       ::::::::::::::::::::::::::
CCDS12 LGDFAFPDEFVFDVWGAIGDAKVGRY
              220       230      

>>CCDS32871.1 GIPC3 gene_id:126326|Hs108|chr19            (312 aa)
 initn: 1306 init1: 1280 opt: 1288  Z-score: 1005.4  bits: 194.3 E(32554): 1.1e-49
Smith-Waterman score: 1288; 66.1% identity (84.9% similar) in 298 aa overlap (39-329:11-308)

       10        20        30        40        50               60 
pF1KB9 KKAPPLVENEEAEPGRGGLGVGEPGPLGGGGSGGPQMGLPPP----PPAL---RPRLVFH
                                     :.  :. . :::    :::    ::::::.
CCDS32                     MEGAAAREARGTETPRASAPPPAPSEPPAAPRARPRLVFR
                                   10        20        30        40

              70        80        90       100       110       120 
pF1KB9 TQLAHGSPTGRIEGFTNVKELYGKIAEAFRLPTAEVMFCTLNTHKVDMDKLLGGQIGLED
       ::::::::::.:::::::.:::.:::::: .  .:..:::::.:::::.:::::::::::
CCDS32 TQLAHGSPTGKIEGFTNVRELYAKIAEAFGIAPTEILFCTLNSHKVDMQKLLGGQIGLED
               50        60        70        80        90       100

             130       140       150       160       170       180 
pF1KB9 FIFAHVKGQRKEVEVFKSEDALGLTITDNGAGYAFIKRIKEGSVIDHIHLISVGDMIEAI
       ::::::.:. ::::: :.:::::::::::::::::::::::::.:..:. . ::: ::::
CCDS32 FIFAHVRGETKEVEVTKTEDALGLTITDNGAGYAFIKRIKEGSIINRIEAVCVGDSIEAI
              110       120       130       140       150       160

             190       200       210       220       230       240 
pF1KB9 NGQSLLGCRHYEVARLLKELPRGRTFTLKLTEPRKAFDMISQRSAGGRPGSGPQLGTGRG
       : .:..::::::::..:.:::... :::.:..:..:::::.::: ...     .. .:: 
CCDS32 NDHSIVGCRHYEVAKMLRELPKSQPFTLRLVQPKRAFDMIGQRSRSSKCPVEAKVTSGRE
              170       180       190       200       210       220

             250       260       270       280       290       300 
pF1KB9 TLRLRSRGPATVEDLPSAFEEKAIEKVDDLLESYMGIRDTELAATMVELGKDKRNPDELA
       :::::: : ::::. :: :::.: .:::::::::::::: :::.:::: .:   . .:.:
CCDS32 TLRLRSGGAATVEEAPSEFEEEASRKVDDLLESYMGIRDPELASTMVETSKKTASAQEFA
              230       240       250       260       270       280

             310       320       330   
pF1KB9 EALDERLGDFAFPDEFVFDVWGAIGDAKVGRY
       . ::  ::.:::::::: .::.:::.:.    
CCDS32 RCLDSVLGEFAFPDEFVVEVWAAIGEAREACG
              290       300       310  

>>CCDS685.1 GIPC2 gene_id:54810|Hs108|chr1                (315 aa)
 initn: 856 init1: 764 opt: 1263  Z-score: 986.1  bits: 190.7 E(32554): 1.3e-48
Smith-Waterman score: 1275; 61.7% identity (81.5% similar) in 329 aa overlap (1-329:1-311)

               10        20        30        40        50        60
pF1KB9 MPLGLGRRKKAPPLVENEEAEPGRGGLGVGEPGPLGGGGSGGPQMGLPPPPPALRPRLVF
       ::: :  .:::    ...:.    .::  :::   :::. .. .       ::   ::::
CCDS68 MPLKLRGKKKA----KSKET----AGLVEGEPTGAGGGSLSASRA------PAR--RLVF
               10                20        30              40      

               70        80        90       100       110       120
pF1KB9 HTQLAHGSPTGRIEGFTNVKELYGKIAEAFRLPTAEVMFCTLNTHKVDMDKLLGGQIGLE
       :.:::::: :::.:::....:::..:: ::..  .:...::::: :.::..:::::.:::
CCDS68 HAQLAHGSATGRVEGFSSIQELYAQIAGAFEISPSEILYCTLNTPKIDMERLLGGQLGLE
           50        60        70        80        90       100    

              130       140       150       160       170       180
pF1KB9 DFIFAHVKGQRKEVEVFKSEDALGLTITDNGAGYAFIKRIKEGSVIDHIHLISVGDMIEA
       ::::::::: .:::.:.::::.:::::::::.:::::::::.:.::: .. : ::: ::.
CCDS68 DFIFAHVKGIEKEVNVYKSEDSLGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIES
          110       120       130       140       150       160    

              190       200       210       220       230       240
pF1KB9 INGQSLLGCRHYEVARLLKELPRGRTFTLKLTEPRKAFDMISQRSAGGRPGSGPQLGTGR
       :::....: :::.::. :::: . . ::.:: ::.:::. :  :: .:. .:: ..: ::
CCDS68 INGENIVGWRHYDVAKKLKELKKEELFTMKLIEPKKAFE-IELRSKAGK-SSGEKIGCGR
          170       180       190       200        210        220  

              250       260       270       280       290       300
pF1KB9 GTLRLRSRGPATVEDLPSAFEEKAIEKVDDLLESYMGIRDTELAATMVELGKDKRNPDEL
       .::::::.::::::..::  . :::::.::.:: :::::: .::.:: : :::: ::::.
CCDS68 ATLRLRSKGPATVEEMPSETKAKAIEKIDDVLELYMGIRDIDLATTMFEAGKDKVNPDEF
            230       240       250       260       270       280  

              310       320       330   
pF1KB9 AEALDERLGDFAFPDEFVFDVWGAIGDAKVGRY
       : :::: ::::::::::::::::.:::::    
CCDS68 AVALDETLGDFAFPDEFVFDVWGVIGDAKRRGL
            290       300       310     




333 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:46:09 2016 done: Thu Nov  3 23:46:10 2016
 Total Scan time:  3.150 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]