Result of FASTA (ccds) for
pF1KB9476
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9476, 349 aa
1>>>pF1KB9476 349 - 349 aa - 349 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0041+/-0.000808; mu= 12.8104+/- 0.049
mean_var=72.3242+/-14.258, 0's: 0 Z-trim(107.9): 20 B-trim: 39 in 1/52
Lambda= 0.150811
statistics sampled from 9853 (9867) to 9853 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.69), E-opt: 0.2 (0.303), width: 16
Scan time: 2.210
The best scores are: opt bits E(32554)
CCDS2849.1 TWF2 gene_id:11344|Hs108|chr3 ( 349) 2330 516.0 1.9e-146
CCDS31780.2 TWF1 gene_id:5756|Hs108|chr12 ( 350) 1615 360.4 1.3e-99
CCDS55818.1 TWF1 gene_id:5756|Hs108|chr12 ( 357) 1591 355.2 4.9e-98
>>CCDS2849.1 TWF2 gene_id:11344|Hs108|chr3 (349 aa)
initn: 2330 init1: 2330 opt: 2330 Z-score: 2742.7 bits: 516.0 E(32554): 1.9e-146
Smith-Waterman score: 2330; 100.0% identity (100.0% similar) in 349 aa overlap (1-349:1-349)
10 20 30 40 50 60
pF1KB9 MAHQTGIHATEELKEFFAKARAGSVRLIKVVIEDEQLVLGASQEPVGRWDQDYDRAVLPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 MAHQTGIHATEELKEFFAKARAGSVRLIKVVIEDEQLVLGASQEPVGRWDQDYDRAVLPL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LDAQQPCYLLYRLDSQNAQGFEWLFLAWSPDNSPVRLKMLYAATRATVKKEFGGGHIKDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 LDAQQPCYLLYRLDSQNAQGFEWLFLAWSPDNSPVRLKMLYAATRATVKKEFGGGHIKDE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 LFGTVKDDLSFAGYQKHLSSCAAPAPLTSAERELQQIRINEVKTEISVESKHQTLQGLAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 LFGTVKDDLSFAGYQKHLSSCAAPAPLTSAERELQQIRINEVKTEISVESKHQTLQGLAF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 PLQPEAQRALQQLKQKMVNYIQMKLDLERETIELVHTEPTDVAQLPSRVPRDAARYHFFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 PLQPEAQRALQQLKQKMVNYIQMKLDLERETIELVHTEPTDVAQLPSRVPRDAARYHFFL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 YKHTHEGDPLESVVFIYSMPGYKCSIKERMLYSSCKSRLLDSVEQDFHLEIAKKIEIGDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 YKHTHEGDPLESVVFIYSMPGYKCSIKERMLYSSCKSRLLDSVEQDFHLEIAKKIEIGDG
250 260 270 280 290 300
310 320 330 340
pF1KB9 AELTAEFLYDEVHPKQHAFKQAFAKPKGPGGKRGHKRLIRGPGENGDDS
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 AELTAEFLYDEVHPKQHAFKQAFAKPKGPGGKRGHKRLIRGPGENGDDS
310 320 330 340
>>CCDS31780.2 TWF1 gene_id:5756|Hs108|chr12 (350 aa)
initn: 1607 init1: 1607 opt: 1615 Z-score: 1901.9 bits: 360.4 E(32554): 1.3e-99
Smith-Waterman score: 1615; 65.4% identity (91.0% similar) in 344 aa overlap (1-344:1-344)
10 20 30 40 50 60
pF1KB9 MAHQTGIHATEELKEFFAKARAGSVRLIKVVIEDEQLVLGASQEPVGRWDQDYDRAVLPL
:.:::::.:.:..::.::.:: :. ::.:. ::.::::.:. ..: ::.::: ::::
CCDS31 MSHQTGIQASEDVKEIFARARNGKYRLLKISIENEQLVIGSYSQPSDSWDKDYDSFVLPL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LDAQQPCYLLYRLDSQNAQGFEWLFLAWSPDNSPVRLKMLYAATRATVKKEFGGGHIKDE
:. .::::.:.:::::::::.::.:.:::::.: :: ::::::::::.::::::::::::
CCDS31 LEDKQPCYILFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 LFGTVKDDLSFAGYQKHLSSCAAPAPLTSAERELQQIRINEVKTEISVESKHQTLQGLAF
.:::::.:.:. ::.:.: : ..:::::.::.::.::.::::.:...:..:::::::.::
CCDS31 VFGTVKEDVSLHGYKKYLLSQSSPAPLTAAEEELRQIKINEVQTDVGVDTKHQTLQGVAF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 PLQPEAQRALQQLKQKMVNYIQMKLDLERETIELVHTEPTDVAQLPSRVPRDAARYHFFL
:.. :: .::..:.....::.:...:.. : : :..: :.. .::.:.:.:.:::::::
CCDS31 PISREAFQALEKLNNRQLNYVQLEIDIKNEIIILANTTNTELKDLPKRIPKDSARYHFFL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 YKHTHEGDPLESVVFIYSMPGYKCSIKERMLYSSCKSRLLDSVEQDFHLEIAKKIEIGDG
:::.:::: :::.::::::::: :::.:::::::::::::. ::....... .:::: .:
CCDS31 YKHSHEGDYLESIVFIYSMPGYTCSIRERMLYSSCKSRLLEIVERQLQMDVIRKIEIDNG
250 260 270 280 290 300
310 320 330 340
pF1KB9 AELTAEFLYDEVHPKQHAFKQAFAKPKGPGGKRGHKRLIRGPGENGDDS
::::.:::.:::::::: ::.:::::::.:::: .::::::.:
CCDS31 DELTADFLYEEVHPKQHAHKQSFAKPKGPAGKRGIRRLIRGPAETEATTD
310 320 330 340 350
>>CCDS55818.1 TWF1 gene_id:5756|Hs108|chr12 (357 aa)
initn: 1574 init1: 812 opt: 1591 Z-score: 1873.6 bits: 355.2 E(32554): 4.9e-98
Smith-Waterman score: 1591; 64.1% identity (89.2% similar) in 351 aa overlap (1-344:1-351)
10 20 30 40 50 60
pF1KB9 MAHQTGIHATEELKEFFAKARAGSVRLIKVVIEDEQLVLGASQEPVGRWDQDYDRAVLPL
:.:::::.:.:..::.::.:: :. ::.:. ::.::::.:. ..: ::.::: ::::
CCDS55 MSHQTGIQASEDVKEIFARARNGKYRLLKISIENEQLVIGSYSQPSDSWDKDYDSFVLPL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LDAQQPCYLLYRLDSQNAQGFEWLFLAWSPDNSPVRLKMLYAATRATVKKEFGGGHIKDE
:. .::::.:.:::::::::.::.:.:::::.: :: ::::::::::.::::::::::::
CCDS55 LEDKQPCYILFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDE
70 80 90 100 110 120
130 140 150 160 170
pF1KB9 LFGTVKDDLSFAGYQKHLSSCAAPAPLTSAERELQQIRINE-------VKTEISVESKHQ
.:::::.:.:. ::.:.: : ..:::::.::.::.::.::: :.:...:..:::
CCDS55 VFGTVKEDVSLHGYKKYLLSQSSPAPLTAAEEELRQIKINESPEDHIGVQTDVGVDTKHQ
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB9 TLQGLAFPLQPEAQRALQQLKQKMVNYIQMKLDLERETIELVHTEPTDVAQLPSRVPRDA
::::.:::.. :: .::..:.....::.:...:.. : : :..: :.. .::.:.:.:.
CCDS55 TLQGVAFPISREAFQALEKLNNRQLNYVQLEIDIKNEIIILANTTNTELKDLPKRIPKDS
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB9 ARYHFFLYKHTHEGDPLESVVFIYSMPGYKCSIKERMLYSSCKSRLLDSVEQDFHLEIAK
::::::::::.:::: :::.::::::::: :::.:::::::::::::. ::....... .
CCDS55 ARYHFFLYKHSHEGDYLESIVFIYSMPGYTCSIRERMLYSSCKSRLLEIVERQLQMDVIR
250 260 270 280 290 300
300 310 320 330 340
pF1KB9 KIEIGDGAELTAEFLYDEVHPKQHAFKQAFAKPKGPGGKRGHKRLIRGPGENGDDS
:::: .: ::::.:::.:::::::: ::.:::::::.:::: .::::::.:
CCDS55 KIEIDNGDELTADFLYEEVHPKQHAHKQSFAKPKGPAGKRGIRRLIRGPAETEATTD
310 320 330 340 350
349 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 23:45:35 2016 done: Thu Nov 3 23:45:36 2016
Total Scan time: 2.210 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]