FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9475, 343 aa
  1>>>pF1KB9475 343 - 343 aa - 343 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0811+/-0.000783; mu= 13.3852+/- 0.047
 mean_var=92.3811+/-18.367, 0's: 0 Z-trim(109.7): 8  B-trim: 7 in 1/52
 Lambda= 0.133439
 statistics sampled from 11094 (11096) to 11094 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.341), width:  16
 Scan time:  2.940

The best scores are:                                      opt bits E(32554)
CCDS83050.1 UIMC1 gene_id:51720|Hs108|chr5         ( 553) 2037 402.1 5.6e-112
CCDS4408.1 UIMC1 gene_id:51720|Hs108|chr5          ( 719) 2032 401.2 1.3e-111


>>CCDS83050.1 UIMC1 gene_id:51720|Hs108|chr5              (553 aa)
 initn: 2039 init1: 1224 opt: 2037  Z-score: 2123.8  bits: 402.1 E(32554): 5.6e-112
Smith-Waterman score: 2037; 92.2% identity (95.1% similar) in 344 aa overlap (6-343:211-553)

                                        10        20        30     
pF1KB9                          MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGI
                                     ....  .::  .   .. :  :. .:::::
CCDS83 EPWDHTEKTEEEPVSGSSGSWDQSSQPVFENVNVKSFDRCTGHSAEHTQC-GKPQSSQGI
              190       200       210       220       230          

          40        50        60        70        80        90     
pF1KB9 VEETSEEGNSVPASQSVAALTSKRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 VEETSEEGNSVPASQSVAALTSKRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPG
     240       250       260       270       280       290         

         100       110       120       130       140       150     
pF1KB9 SRDILDGVRIIMADKEVGNKEDAEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 SRDILDGVRIIMADKEVGNKEDAEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCN
     300       310       320       330       340       350         

         160       170       180       190       200       210     
pF1KB9 GLMEEDTVLTRRQKEAKTKSDSGTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 GLMEEDTVLTRRQKEAKTKSDSGTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQL
     360       370       380       390       400       410         

               220       230       240       250       260         
pF1KB9 AKA------EGSGRACSTVEGKWQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSE
       :::      :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 AKADQGDGPEGSGRACSTVEGKWQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSE
     420       430       440       450       460       470         

     270       280       290       300       310       320         
pF1KB9 TGAFRVPSPGMEEAGCSREMQSSFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 TGAFRVPSPGMEEAGCSREMQSSFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGS
     480       490       500       510       520       530         

     330       340   
pF1KB9 RTRTKAGRGRRRKF
       ::::::::::::::
CCDS83 RTRTKAGRGRRRKF
     540       550   

>>CCDS4408.1 UIMC1 gene_id:51720|Hs108|chr5               (719 aa)
 initn: 2039 init1: 1224 opt: 2032  Z-score: 2117.0  bits: 401.2 E(32554): 1.3e-111
Smith-Waterman score: 2032; 95.2% identity (97.0% similar) in 331 aa overlap (19-343:390-719)

                           10        20        30        40        
pF1KB9             MLPLPDLDLWPLDRLPSPIKRKPQTLGSLKSSQGIVEETSEEGNSVPA
                                     ....: :  . .::::::::::::::::::
CCDS44 ERQESRASDWHSKTKDFQESSIKSLKEKLLLEEEPTTSHG-QSSQGIVEETSEEGNSVPA
     360       370       380       390        400       410        

       50        60        70        80        90       100        
pF1KB9 SQSVAALTSKRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SQSVAALTSKRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGVRIIMA
      420       430       440       450       460       470        

      110       120       130       140       150       160        
pF1KB9 DKEVGNKEDAEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DKEVGNKEDAEKEVAISTFSSSNQVSCPLCDQCFPPTKIERHAMYCNGLMEEDTVLTRRQ
      480       490       500       510       520       530        

      170       180       190       200       210             220  
pF1KB9 KEAKTKSDSGTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKA------EGSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::      ::::
CCDS44 KEAKTKSDSGTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLAKADQGDGPEGSG
      540       550       560       570       580       590        

            230       240       250       260       270       280  
pF1KB9 RACSTVEGKWQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RACSTVEGKWQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGMEE
      600       610       620       630       640       650        

            290       300       310       320       330       340  
pF1KB9 AGCSREMQSSFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 AGCSREMQSSFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRK
      660       670       680       690       700       710        

        
pF1KB9 F
       :
CCDS44 F
        




343 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:44:23 2016 done: Thu Nov  3 23:44:24 2016
 Total Scan time:  2.940 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]