FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9474, 194 aa
  1>>>pF1KB9474 194 - 194 aa - 194 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.5854+/-0.00106; mu= 0.0486+/- 0.064
 mean_var=194.1724+/-37.691, 0's: 0 Z-trim(109.7): 21  B-trim: 0 in 0/54
 Lambda= 0.092041
 statistics sampled from 11061 (11075) to 11061 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.662), E-opt: 0.2 (0.34), width:  16
 Scan time:  1.810

The best scores are:                                      opt bits E(32554)
CCDS13956.1 H1F0 gene_id:3005|Hs108|chr22          ( 194) 1196 170.4 6.3e-43


>>CCDS13956.1 H1F0 gene_id:3005|Hs108|chr22               (194 aa)
 initn: 1196 init1: 1196 opt: 1196  Z-score: 884.2  bits: 170.4 E(32554): 6.3e-43
Smith-Waterman score: 1196; 100.0% identity (100.0% similar) in 194 aa overlap (1-194:1-194)

               10        20        30        40        50        60
pF1KB9 MTENSTSAPAAKPKRAKASKKSTDHPKYSDMIVAAIQAEKNRAGSSRQSIQKYIKSHYKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MTENSTSAPAAKPKRAKASKKSTDHPKYSDMIVAAIQAEKNRAGSSRQSIQKYIKSHYKV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 GENADSQIKLSIKRLVTTGVLKQTKGVGASGSFRLAKSDEPKKSVAFKKTKKEIKKVATP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GENADSQIKLSIKRLVTTGVLKQTKGVGASGSFRLAKSDEPKKSVAFKKTKKEIKKVATP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 KKASKPKKAASKAPTKKPKATPVKKAKKKLAATPKKAKKPKTVKAKPVKASKPKKAKPVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KKASKPKKAASKAPTKKPKATPVKKAKKKLAATPKKAKKPKTVKAKPVKASKPKKAKPVK
              130       140       150       160       170       180

              190    
pF1KB9 PKAKSSAKRAGKKK
       ::::::::::::::
CCDS13 PKAKSSAKRAGKKK
              190    




194 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:43:48 2016 done: Thu Nov  3 23:43:49 2016
 Total Scan time:  1.810 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]