Result of FASTA (ccds) for
pF1KB9473
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9473, 832 aa
1>>>pF1KB9473 832 - 832 aa - 832 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2519+/-0.000943; mu= 16.7348+/- 0.057
mean_var=84.4807+/-17.209, 0's: 0 Z-trim(107.3): 15 B-trim: 2 in 1/50
Lambda= 0.139539
statistics sampled from 9506 (9514) to 9506 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.631), E-opt: 0.2 (0.292), width: 16
Scan time: 3.990
The best scores are: opt bits E(32554)
CCDS77790.1 SIDT1 gene_id:54847|Hs108|chr3 ( 832) 5556 1128.7 0
CCDS2974.1 SIDT1 gene_id:54847|Hs108|chr3 ( 827) 5505 1118.4 0
CCDS31682.1 SIDT2 gene_id:51092|Hs108|chr11 ( 832) 2288 470.8 4.3e-132
>>CCDS77790.1 SIDT1 gene_id:54847|Hs108|chr3 (832 aa)
initn: 5556 init1: 5556 opt: 5556 Z-score: 6040.5 bits: 1128.7 E(32554): 0
Smith-Waterman score: 5556; 100.0% identity (100.0% similar) in 832 aa overlap (1-832:1-832)
10 20 30 40 50 60
pF1KB9 MRGCLRLALLCALPWLLLAASPGHPAKSPRQPPAPRRDPFDAARGADFDHVYSGVVNLST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MRGCLRLALLCALPWLLLAASPGHPAKSPRQPPAPRRDPFDAARGADFDHVYSGVVNLST
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 ENIYSFNYTSQPDQVTAVRVYVNSSSENLNYPVLVVVRQQKEVLSWQVPLLFQGLYQRSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 ENIYSFNYTSQPDQVTAVRVYVNSSSENLNYPVLVVVRQQKEVLSWQVPLLFQGLYQRSY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 NYQEVSRTLCPSEATNETGPLQQLIFVDVASMAPLGAQYKLLVTKLKHFQLRTNVAFHFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 NYQEVSRTLCPSEATNETGPLQQLIFVDVASMAPLGAQYKLLVTKLKHFQLRTNVAFHFT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 ASPSQPQYFLYKFPKDVDSVIIKVVSEMAYPCSVVSVQNIMCPVYDLDHNVEFNGVYQSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 ASPSQPQYFLYKFPKDVDSVIIKVVSEMAYPCSVVSVQNIMCPVYDLDHNVEFNGVYQSM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 TKKAAITLQKKDFPGEQFFVVFVIKPEDYACGGSFFIQEKENQTWNLQRKKNLEVTIVPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 TKKAAITLQKKDFPGEQFFVVFVIKPEDYACGGSFFIQEKENQTWNLQRKKNLEVTIVPS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 IKESVYVKSSLFSVFIFLSFYLGCLLVGFVHYLRFQRKSIDGSFGSNDGSGNMVASHPIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 IKESVYVKSSLFSVFIFLSFYLGCLLVGFVHYLRFQRKSIDGSFGSNDGSGNMVASHPIA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 ASTPEGSNYGTIDESSSSPGRQMSSSDGGPPGQSDTDSSVEESDFDTMPDIESDKNIIRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 ASTPEGSNYGTIDESSSSPGRQMSSSDGGPPGQSDTDSSVEESDFDTMPDIESDKNIIRT
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 KMFLYLSDLSRKDRRIVSKKYKIYFWNIITIAVFYALPVIQLVITYQTVVNVTGNQDICY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 KMFLYLSDLSRKDRRIVSKKYKIYFWNIITIAVFYALPVIQLVITYQTVVNVTGNQDICY
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 YNFLCAHPLGVLSAFNNILSNLGHVLLGFLFLLIVLRRDILHRRALEAKDIFAVEYGIPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 YNFLCAHPLGVLSAFNNILSNLGHVLLGFLFLLIVLRRDILHRRALEAKDIFAVEYGIPK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 HFGLFYAMGIALMMEGVLSACYHVCPNYSNFQFDTSFMYMIAGLCMLKLYQTRHPDINAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 HFGLFYAMGIALMMEGVLSACYHVCPNYSNFQFDTSFMYMIAGLCMLKLYQTRHPDINAS
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 AYSAYASFAVVIMVTVLGVVFGKNDVWFWVIFSAIHVLASLALSTQIYYMGRFKIDVSDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 AYSAYASFAVVIMVTVLGVVFGKNDVWFWVIFSAIHVLASLALSTQIYYMGRFKIDVSDT
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB9 DLGIFRRAAMVFYTDCIQQCSRPLYMDRMVLLVVGNLVNWSFALFGLIYRPRDFASYMLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 DLGIFRRAAMVFYTDCIQQCSRPLYMDRMVLLVVGNLVNWSFALFGLIYRPRDFASYMLG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB9 IFICNLLLYLAFYIIMKLRSSEKVLPVPLFCIVATAVMWAAALYFFFQNLSSWEGTPAES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 IFICNLLLYLAFYIIMKLRSSEKVLPVPLFCIVATAVMWAAALYFFFQNLSSWEGTPAES
730 740 750 760 770 780
790 800 810 820 830
pF1KB9 REKNRECILLDFFDDHDIWHFLSATALFFSFLVLLTLDDDLDVVRRDQIPVF
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 REKNRECILLDFFDDHDIWHFLSATALFFSFLVLLTLDDDLDVVRRDQIPVF
790 800 810 820 830
>>CCDS2974.1 SIDT1 gene_id:54847|Hs108|chr3 (827 aa)
initn: 4365 init1: 4365 opt: 5505 Z-score: 5985.0 bits: 1118.4 E(32554): 0
Smith-Waterman score: 5505; 99.4% identity (99.4% similar) in 832 aa overlap (1-832:1-827)
10 20 30 40 50 60
pF1KB9 MRGCLRLALLCALPWLLLAASPGHPAKSPRQPPAPRRDPFDAARGADFDHVYSGVVNLST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 MRGCLRLALLCALPWLLLAASPGHPAKSPRQPPAPRRDPFDAARGADFDHVYSGVVNLST
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 ENIYSFNYTSQPDQVTAVRVYVNSSSENLNYPVLVVVRQQKEVLSWQVPLLFQGLYQRSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 ENIYSFNYTSQPDQVTAVRVYVNSSSENLNYPVLVVVRQQKEVLSWQVPLLFQGLYQRSY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 NYQEVSRTLCPSEATNETGPLQQLIFVDVASMAPLGAQYKLLVTKLKHFQLRTNVAFHFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 NYQEVSRTLCPSEATNETGPLQQLIFVDVASMAPLGAQYKLLVTKLKHFQLRTNVAFHFT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 ASPSQPQYFLYKFPKDVDSVIIKVVSEMAYPCSVVSVQNIMCPVYDLDHNVEFNGVYQSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 ASPSQPQYFLYKFPKDVDSVIIKVVSEMAYPCSVVSVQNIMCPVYDLDHNVEFNGVYQSM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 TKKAAITLQKKDFPGEQFFVVFVIKPEDYACGGSFFIQEKENQTWNLQRKKNLEVTIVPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 TKKAAITLQKKDFPGEQFFVVFVIKPEDYACGGSFFIQEKENQTWNLQRKKNLEVTIVPS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 IKESVYVKSSLFSVFIFLSFYLGCLLVGFVHYLRFQRKSIDGSFGSNDGSGNMVASHPIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 IKESVYVKSSLFSVFIFLSFYLGCLLVGFVHYLRFQRKSIDGSFGSNDGSGNMVASHPIA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 ASTPEGSNYGTIDESSSSPGRQMSSSDGGPPGQSDTDSSVEESDFDTMPDIESDKNIIRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 ASTPEGSNYGTIDESSSSPGRQMSSSDGGPPGQSDTDSSVEESDFDTMPDIESDKNIIRT
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 KMFLYLSDLSRKDRRIVSKKYKIYFWNIITIAVFYALPVIQLVITYQTVVNVTGNQDICY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 KMFLYLSDLSRKDRRIVSKKYKIYFWNIITIAVFYALPVIQLVITYQTVVNVTGNQDICY
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 YNFLCAHPLGVLSAFNNILSNLGHVLLGFLFLLIVLRRDILHRRALEAKDIFAVEYGIPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 YNFLCAHPLGVLSAFNNILSNLGHVLLGFLFLLIVLRRDILHRRALEAKDIFAVEYGIPK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 HFGLFYAMGIALMMEGVLSACYHVCPNYSNFQFDTSFMYMIAGLCMLKLYQTRHPDINAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 HFGLFYAMGIALMMEGVLSACYHVCPNYSNFQFDTSFMYMIAGLCMLKLYQTRHPDINAS
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 AYSAYASFAVVIMVTVLGVVFGKNDVWFWVIFSAIHVLASLALSTQIYYMGRFKIDVSDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 AYSAYASFAVVIMVTVLGVVFGKNDVWFWVIFSAIHVLASLALSTQIYYMGRFKID----
610 620 630 640 650
670 680 690 700 710 720
pF1KB9 DLGIFRRAAMVFYTDCIQQCSRPLYMDRMVLLVVGNLVNWSFALFGLIYRPRDFASYMLG
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 -LGIFRRAAMVFYTDCIQQCSRPLYMDRMVLLVVGNLVNWSFALFGLIYRPRDFASYMLG
660 670 680 690 700 710
730 740 750 760 770 780
pF1KB9 IFICNLLLYLAFYIIMKLRSSEKVLPVPLFCIVATAVMWAAALYFFFQNLSSWEGTPAES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 IFICNLLLYLAFYIIMKLRSSEKVLPVPLFCIVATAVMWAAALYFFFQNLSSWEGTPAES
720 730 740 750 760 770
790 800 810 820 830
pF1KB9 REKNRECILLDFFDDHDIWHFLSATALFFSFLVLLTLDDDLDVVRRDQIPVF
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 REKNRECILLDFFDDHDIWHFLSATALFFSFLVLLTLDDDLDVVRRDQIPVF
780 790 800 810 820
>>CCDS31682.1 SIDT2 gene_id:51092|Hs108|chr11 (832 aa)
initn: 3066 init1: 1404 opt: 2288 Z-score: 2484.9 bits: 470.8 E(32554): 4.3e-132
Smith-Waterman score: 3155; 59.3% identity (81.3% similar) in 811 aa overlap (44-832:31-832)
20 30 40 50 60 70
pF1KB9 PWLLLAASPGHPAKSPRQPPAPRRDPFDAARGADFDHVYSGVVNLSTENIYSFNYTSQPD
. :.:...: :: :::.::.: .
CCDS31 MFALGLPFLVLLVASVESHLGVLGPKNVSQKDAEFERTYVDEVNSELVNIYTFNHTVTRN
10 20 30 40 50 60
80 90 100 110 120 130
pF1KB9 QVTAVRVYVNSSSENLNYPVLVVVRQQKEVLSWQVPLLFQGLYQRSYNYQEVSRTLCPSE
.. .::: :: ... . :.: ::::.. :.:.::::...:..::.: ::.: ::::
CCDS31 RTEGVRVSVNVLNKQKGAPLLFVVRQKEAVVSFQVPLILRGMFQRKYLYQKVERTLCQPP
70 80 90 100 110 120
140 150 160 170 180 190
pF1KB9 ATNETGPLQQLIFVDVASMAPLGAQYKLLVTKLKHFQLRTNVAFHFTASPSQPQYFLYKF
. ::. :...:::....:... :.: :... : :::. : :... .::::: :.:
CCDS31 TKNESE--IQFFYVDVSTLSPVNTTYQLRVSRMDDFVLRTGEQFSFNTTAAQPQYFKYEF
130 140 150 160 170
200 210 220 230 240 250
pF1KB9 PKDVDSVIIKVVSEMAYPCSVVSVQNIMCPVYDLDHNVEFNGVYQSMTKKAAITLQKKDF
:. :::::.::.:. :.::::.:.:...:::::::.:: : :.::.::::::::.:.:::
CCDS31 PEGVDSVIVKVTSNKAFPCSVISIQDVLCPVYDLDNNVAFIGMYQTMTKKAAITVQRKDF
180 190 200 210 220 230
260 270 280 290 300 310
pF1KB9 PGEQFFVVFVIKPEDYACGGSF-FIQEKENQTWNL-QRKKNLEVTIVPSIKESVYVKSSL
:...:.:: :.: :: :::::. : :.. . .:.:.: : . .. .::.. :
CCDS31 PSNSFYVVVVVKTEDQACGGSLPFYPFAEDEPVDQGHRQKTLSVLVSQAVTSEAYVSGML
240 250 260 270 280 290
320 330 340 350 360
pF1KB9 FSVFIFLSFYLGCLLVGFVHYLRFQRKS----IDGSFGSNDGSGNMVASHPIAASTP-EG
: . ::::::: .:.. . : ..:. :: . . .. : : .:.: ::
CCDS31 FCLGIFLSFYLLTVLLACWENWRQKKKTLLVAIDRACPESGHPRVLADSFP--GSSPYEG
300 310 320 330 340 350
370 380 390 400 410
pF1KB9 SNYGTIDE-SSSSPGRQMSSSDG----GPPGQS----------DTDSSVEESDFDTMPDI
:::.... :.:. : :.. : : :.: :. :::::.:.::. ::
CCDS31 YNYGSFENVSGSTDGLVDSAGTGDLSYGYQGRSFEPVGTRPRVDSMSSVEEDDYDTLTDI
360 370 380 390 400 410
420 430 440 450 460 470
pF1KB9 ESDKNIIRTKMFLYLSDLSRKDRRIVSKKYKIYFWNIITIAVFYALPVIQLVITYQTVVN
.::::.::::..::..::.:::.:.. :::.:::::: ::::::::::.:::::::::::
CCDS31 DSDKNVIRTKQYLYVADLARKDKRVLRKKYQIYFWNIATIAVFYALPVVQLVITYQTVVN
420 430 440 450 460 470
480 490 500 510 520 530
pF1KB9 VTGNQDICYYNFLCAHPLGVLSAFNNILSNLGHVLLGFLFLLIVLRRDILHRRALEAKDI
::::::::::::::::::: ::::::::::::..:::.:::::.:.:.: : ::: .:.
CCDS31 VTGNQDICYYNFLCAHPLGNLSAFNNILSNLGYILLGLLFLLIILQREINHNRALLRNDL
480 490 500 510 520 530
540 550 560 570 580 590
pF1KB9 FAVEYGIPKHFGLFYAMGIALMMEGVLSACYHVCPNYSNFQFDTSFMYMIAGLCMLKLYQ
:.: ::::::::::::: ::::::.:::::::::::.::::::::::::::::::::::
CCDS31 CALECGIPKHFGLFYAMGTALMMEGLLSACYHVCPNYTNFQFDTSFMYMIAGLCMLKLYQ
540 550 560 570 580 590
600 610 620 630 640 650
pF1KB9 TRHPDINASAYSAYASFAVVIMVTVLGVVFGKNDVWFWVIFSAIHVLASLALSTQIYYMG
:::::::::::::: .:.::. .::::::::... ::..:: ::..:.: ::::.::::
CCDS31 KRHPDINASAYSAYACLAIVIFFSVLGVVFGKGNTAFWIVFSIIHIIATLLLSTQLYYMG
600 610 620 630 640 650
660 670 680 690 700 710
pF1KB9 RFKIDVSDTDLGIFRRAAMVFYTDCIQQCSRPLYMDRMVLLVVGNLVNWSFALFGLIYRP
:.:.: ::::: :.:::::.::: :::.:::::::.::..:::.: .:::.::
CCDS31 RWKLDS-----GIFRRILHVLYTDCIRQCSGPLYVDRMVLLVMGNVINWSLAAYGLIMRP
660 670 680 690 700 710
720 730 740 750 760 770
pF1KB9 RDFASYMLGIFICNLLLYLAFYIIMKLRSSEKVLPVPLFCIVATAVMWAAALYFFFQNLS
:::::.:.: :::::::.::::::::::.:.. .::.::: :.:.:. ::.::::.::
CCDS31 NDFASYLLAIGICNLLLYFAFYIIMKLRSGERIKLIPLLCIVCTSVVWGFALFFFFQGLS
720 730 740 750 760 770
780 790 800 810 820 830
pF1KB9 SWEGTPAESREKNRECILLDFFDDHDIWHFLSATALFFSFLVLLTLDDDLDVVRRDQIPV
.:. :::::::.::.:::::::::::::::::. :.: :::::::::::::.:.::.: :
CCDS31 TWQKTPAESREHNRDCILLDFFDDHDIWHFLSSIAMFGSFLVLLTLDDDLDTVQRDKIYV
780 790 800 810 820 830
pF1KB9 F
:
CCDS31 F
832 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 23:43:13 2016 done: Thu Nov 3 23:43:14 2016
Total Scan time: 3.990 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]