Result of FASTA (ccds) for
pF1KB9457
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9457, 832 aa
1>>>pF1KB9457 832 - 832 aa - 832 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.1749+/-0.00117; mu= 10.8298+/- 0.070
mean_var=345.9862+/-75.281, 0's: 0 Z-trim(113.0): 72 B-trim: 716 in 1/53
Lambda= 0.068952
statistics sampled from 13615 (13681) to 13615 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.744), E-opt: 0.2 (0.42), width: 16
Scan time: 4.530
The best scores are: opt bits E(32554)
CCDS6540.1 NFX1 gene_id:4799|Hs108|chr9 ( 833) 6205 632.2 1.1e-180
CCDS6538.1 NFX1 gene_id:4799|Hs108|chr9 (1120) 6043 616.3 9.3e-176
CCDS3478.2 NFXL1 gene_id:152518|Hs108|chr4 ( 911) 861 100.6 1.2e-20
>>CCDS6540.1 NFX1 gene_id:4799|Hs108|chr9 (833 aa)
initn: 6435 init1: 6060 opt: 6205 Z-score: 3357.3 bits: 632.2 E(32554): 1.1e-180
Smith-Waterman score: 6205; 99.9% identity (99.9% similar) in 833 aa overlap (1-832:1-833)
10 20 30 40 50 60
pF1KB9 MAEAPPVSGTFKFNTDAAEFIPQEKKNSGLNCGTQRRLDSNRIGRRNYSSPPPCHLSRQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MAEAPPVSGTFKFNTDAAEFIPQEKKNSGLNCGTQRRLDSNRIGRRNYSSPPPCHLSRQV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 PYDEISAVHQHSYHPSGSKPKSQQTSFQSSPCNKSPKSHGLQNQPWQKLRNEKHHIRVKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 PYDEISAVHQHSYHPSGSKPKSQQTSFQSSPCNKSPKSHGLQNQPWQKLRNEKHHIRVKK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 AQSLAEQTSDTAGLESSTRSESGTDLREHSPSESEKEVVGADPRGAKPKKATQFVYSYGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 AQSLAEQTSDTAGLESSTRSESGTDLREHSPSESEKEVVGADPRGAKPKKATQFVYSYGR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 GPKVKGKLKCEWSNRTTPKPEDAGPESTKPVGVFHPDSSEASSRKGVLDGYGARRNEQRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 GPKVKGKLKCEWSNRTTPKPEDAGPESTKPVGVFHPDSSEASSRKGVLDGYGARRNEQRR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 YPQKRPPWEVEGARPRPGRNPPKQEGHRHTNAGHRNNMGPIPKDDLNERPAKSTCDSENL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 YPQKRPPWEVEGARPRPGRNPPKQEGHRHTNAGHRNNMGPIPKDDLNERPAKSTCDSENL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 AVINKSSRRVDQEKCTVRRQDPQVVSPFSRGKQNHVLKNVETHTGSLIEQLTTEKYECMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 AVINKSSRRVDQEKCTVRRQDPQVVSPFSRGKQNHVLKNVETHTGSLIEQLTTEKYECMV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 CCELVRVTAPVWSCQSCYHVFHLNCIKKWARSPASQADGQSGWRCPACQNVSAHVPNTYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 CCELVRVTAPVWSCQSCYHVFHLNCIKKWARSPASQADGQSGWRCPACQNVSAHVPNTYT
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 CFCGKVKNPEWSRNEIPHSCGEVCRKKQPGQDCPHSCNLLCHPGPCPPCPAFMTKTCECG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 CFCGKVKNPEWSRNEIPHSCGEVCRKKQPGQDCPHSCNLLCHPGPCPPCPAFMTKTCECG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 RTRHTVRCGQAVSVHCSNPCENILNCGQHQCAELCHGGQCQPCQIILNQVCYCGSTSRDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 RTRHTVRCGQAVSVHCSNPCENILNCGQHQCAELCHGGQCQPCQIILNQVCYCGSTSRDV
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 LCGTDVGKSDGFGDFSCLKICGKDLKCGNHTCSQVCHPQPCQQCPRLPQLVRCCPCGQTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 LCGTDVGKSDGFGDFSCLKICGKDLKCGNHTCSQVCHPQPCQQCPRLPQLVRCCPCGQTP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 LSQLLELGSSSRKTCMDPVPSCGKVCGKPLPCGSLDFIHTCEKLCHEGDCGPCSRTSVIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 LSQLLELGSSSRKTCMDPVPSCGKVCGKPLPCGSLDFIHTCEKLCHEGDCGPCSRTSVIS
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB9 CRCSFRTKELPCTSLKSEDATFMCDKRCNKKRLCGRHKCNEICCVDKEHKCPLICGRKLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 CRCSFRTKELPCTSLKSEDATFMCDKRCNKKRLCGRHKCNEICCVDKEHKCPLICGRKLR
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB9 CGLHRCEEPCHRGNCQTCWQASFDELTCHCGASVIYPPVPCGTRPPECTQTCARVHECDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 CGLHRCEEPCHRGNCQTCWQASFDELTCHCGASVIYPPVPCGTRPPECTQTCARVHECDH
730 740 750 760 770 780
790 800 810 820 830
pF1KB9 PVYHSCHSEEKCPPCTFLTQKWCMGKHE-SHYWASTQKKRSHYMKKIPAHACL
:::::::::::::::::::::::::::: ::::::::::::::::::::::::
CCDS65 PVYHSCHSEEKCPPCTFLTQKWCMGKHEQSHYWASTQKKRSHYMKKIPAHACL
790 800 810 820 830
>>CCDS6538.1 NFX1 gene_id:4799|Hs108|chr9 (1120 aa)
initn: 6043 init1: 6043 opt: 6043 Z-score: 3268.9 bits: 616.3 E(32554): 9.3e-176
Smith-Waterman score: 6043; 100.0% identity (100.0% similar) in 808 aa overlap (1-808:1-808)
10 20 30 40 50 60
pF1KB9 MAEAPPVSGTFKFNTDAAEFIPQEKKNSGLNCGTQRRLDSNRIGRRNYSSPPPCHLSRQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MAEAPPVSGTFKFNTDAAEFIPQEKKNSGLNCGTQRRLDSNRIGRRNYSSPPPCHLSRQV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 PYDEISAVHQHSYHPSGSKPKSQQTSFQSSPCNKSPKSHGLQNQPWQKLRNEKHHIRVKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 PYDEISAVHQHSYHPSGSKPKSQQTSFQSSPCNKSPKSHGLQNQPWQKLRNEKHHIRVKK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 AQSLAEQTSDTAGLESSTRSESGTDLREHSPSESEKEVVGADPRGAKPKKATQFVYSYGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 AQSLAEQTSDTAGLESSTRSESGTDLREHSPSESEKEVVGADPRGAKPKKATQFVYSYGR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 GPKVKGKLKCEWSNRTTPKPEDAGPESTKPVGVFHPDSSEASSRKGVLDGYGARRNEQRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 GPKVKGKLKCEWSNRTTPKPEDAGPESTKPVGVFHPDSSEASSRKGVLDGYGARRNEQRR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 YPQKRPPWEVEGARPRPGRNPPKQEGHRHTNAGHRNNMGPIPKDDLNERPAKSTCDSENL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 YPQKRPPWEVEGARPRPGRNPPKQEGHRHTNAGHRNNMGPIPKDDLNERPAKSTCDSENL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 AVINKSSRRVDQEKCTVRRQDPQVVSPFSRGKQNHVLKNVETHTGSLIEQLTTEKYECMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 AVINKSSRRVDQEKCTVRRQDPQVVSPFSRGKQNHVLKNVETHTGSLIEQLTTEKYECMV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 CCELVRVTAPVWSCQSCYHVFHLNCIKKWARSPASQADGQSGWRCPACQNVSAHVPNTYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 CCELVRVTAPVWSCQSCYHVFHLNCIKKWARSPASQADGQSGWRCPACQNVSAHVPNTYT
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 CFCGKVKNPEWSRNEIPHSCGEVCRKKQPGQDCPHSCNLLCHPGPCPPCPAFMTKTCECG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 CFCGKVKNPEWSRNEIPHSCGEVCRKKQPGQDCPHSCNLLCHPGPCPPCPAFMTKTCECG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 RTRHTVRCGQAVSVHCSNPCENILNCGQHQCAELCHGGQCQPCQIILNQVCYCGSTSRDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 RTRHTVRCGQAVSVHCSNPCENILNCGQHQCAELCHGGQCQPCQIILNQVCYCGSTSRDV
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 LCGTDVGKSDGFGDFSCLKICGKDLKCGNHTCSQVCHPQPCQQCPRLPQLVRCCPCGQTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 LCGTDVGKSDGFGDFSCLKICGKDLKCGNHTCSQVCHPQPCQQCPRLPQLVRCCPCGQTP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 LSQLLELGSSSRKTCMDPVPSCGKVCGKPLPCGSLDFIHTCEKLCHEGDCGPCSRTSVIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 LSQLLELGSSSRKTCMDPVPSCGKVCGKPLPCGSLDFIHTCEKLCHEGDCGPCSRTSVIS
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB9 CRCSFRTKELPCTSLKSEDATFMCDKRCNKKRLCGRHKCNEICCVDKEHKCPLICGRKLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 CRCSFRTKELPCTSLKSEDATFMCDKRCNKKRLCGRHKCNEICCVDKEHKCPLICGRKLR
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB9 CGLHRCEEPCHRGNCQTCWQASFDELTCHCGASVIYPPVPCGTRPPECTQTCARVHECDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 CGLHRCEEPCHRGNCQTCWQASFDELTCHCGASVIYPPVPCGTRPPECTQTCARVHECDH
730 740 750 760 770 780
790 800 810 820 830
pF1KB9 PVYHSCHSEEKCPPCTFLTQKWCMGKHESHYWASTQKKRSHYMKKIPAHACL
::::::::::::::::::::::::::::
CCDS65 PVYHSCHSEEKCPPCTFLTQKWCMGKHEFRSNIPCHLVDISCGLPCSATLPCGMHKCQRL
790 800 810 820 830 840
>>CCDS3478.2 NFXL1 gene_id:152518|Hs108|chr4 (911 aa)
initn: 608 init1: 366 opt: 861 Z-score: 483.9 bits: 100.6 E(32554): 1.2e-20
Smith-Waterman score: 1349; 34.8% identity (55.5% similar) in 587 aa overlap (252-801:43-584)
230 240 250 260 270 280
pF1KB9 SSRKGVLDGYGARRNEQRRYPQKRPPWEVEGARPRPGRNPPKQEGHRHTNAGHRNNMGPI
:: : : .: : :.:. . .:
CCDS34 GRSRGRATAAPSGNGVHLRGAGGGREKGSVGAVPS-GTSP----GGVATTAAAGSRHSPA
20 30 40 50 60
290 300 310 320 330
pF1KB9 PKDDLNERPAKSTCDSENLAVINKSS----RRVDQEKCTVRRQDPQVVSPFSRGKQNHVL
.. :. :. ..... :.:.. :.. .:. . .. . : .:::...:
CCDS34 GSQALQTTAASELMSQKKFEEIKKANQAAARKLVEEQFSSSSEEGD--EDF-EGKQGKIL
70 80 90 100 110 120
340 350 360 370 380
pF1KB9 KNV----ETHT-GSLIEQLTTEKY----------ECMVCCELVRVTAPVWSCQSCYHVFH
:. :.: :. : :..: :..: :. . ::::..:. .::
CCDS34 ANTFITYTTQTDGDTRELERTKQYVNEAFQAGAMTCLICIASVKRNQAVWSCSGCFCIFH
130 140 150 160 170 180
390 400 410 420 430
pF1KB9 LNCIKKWARSP----ASQADGQSG-----WRCPAC--QNVSAHVPNTYTCFCGKVKNPEW
. ::.:::.. .: .: . : : :: : . ...:. : :.::::..:
CCDS34 MPCIQKWAKDSQFLVSSVTDDDFGKKDCPWPCPKCRFEYKRSETPSRYYCYCGKVEDPPL
190 200 210 220 230 240
440 450 460 470 480 490
pF1KB9 SRNEIPHSCGEVCRKK-QPGQDCPHSCNLLCHPGPCPPCPAFMTKTCECGRTRHTVRCGQ
. .:::::.::... .: : :.: :::::::::::: ..: :: : ... : .
CCDS34 DPWLVPHSCGQVCEREFKP--PCGHKCLLLCHPGPCPPCPKMVTTTCYCKKAKPIPRRCS
250 260 270 280 290 300
500 510 520 530 540 550
pF1KB9 AVSVHCSNPCENILNCGQHQCAELCHGGQCQPCQIILNQVCYCGSTSRDVLCGTDVGKSD
: :. :: . : ::::.: . ::.:.:::: . : : ::. . :.. .
CCDS34 AKEWSCQLPCGQKLLCGQHKCENPCHAGSCQPCPRVSRQKCVCGKKVAERSCASPL----
310 320 330 340 350
560 570 580 590 600 610
pF1KB9 GFGDFSCLKICGKDLKCGNHTCSQVCHPQPCQQCPRLPQLVRCCPCGQTPLSQLLELGSS
. : ..::: : :::::: :::: : .::: . : ::: .. .:
CCDS34 ----WHCDQVCGKTLPCGNHTCEQVCHVGACGECPRSGK--RFCPCQKSKFSL-------
360 370 380 390 400
620 630 640 650 660 670
pF1KB9 SRKTCMDPVPSCGKVCGKPLPCGSLDFIHTCEKLCHEGDCGPCSRTSVISCRCSFRTKEL
: . ::.:: : : : :: :: : . ::.: : : . :::. .::..
CCDS34 ---PCTEDVPTCGDSCDKVLECG----IHRCSQRCHRGPCETCRQEVEKHCRCGKHTKRM
410 420 430 440 450
680 690 700 710 720 730
pF1KB9 PCTSLKSEDATFMCDKRCNKKRLCGRHKCNEICCVDKEHKCPLICGRKLRCGLHRCEEPC
:: . ..:. .: : : : .:.: . :: . : ::: : : :.: :
CCDS34 PCHK------PYLCETKCVKMRDCQKHQCRRKCCPGNCPPCDQNCGRTLGCRNHKCPSVC
460 470 480 490 500 510
740 750 760 770 780
pF1KB9 HRGNCQTCWQASFDELTCHCGASVIYPPVPCG----TRPPECTQTCARVHECDHPVY--H
:::.: : .. .. :.:: . . :::: ::::.: . :.: : : :
CCDS34 HRGSCYPCPETV--DVKCNCGNTKV--TVPCGRERTTRPPKCKEQCSRPPTCHHTSQEKH
520 530 540 550 560
790 800 810 820 830
pF1KB9 SCHSEEKCPPCTFLTQKWCMGKHESHYWASTQKKRSHYMKKIPAHACL
:: .:::: ::
CCDS34 RCHFG-SCPPCHQPCQKVLEKCGHLCPAPCHDQALIKQTGRHQPTGPWEQPSEPAFIQTA
570 580 590 600 610 620
832 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 23:29:48 2016 done: Thu Nov 3 23:29:49 2016
Total Scan time: 4.530 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]