FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9454, 519 aa
  1>>>pF1KB9454 519 - 519 aa - 519 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6998+/-0.000358; mu= 7.1317+/- 0.023
 mean_var=116.9810+/-23.714, 0's: 0 Z-trim(116.3): 64  B-trim: 1471 in 2/57
 Lambda= 0.118581
 statistics sampled from 27311 (27378) to 27311 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.644), E-opt: 0.2 (0.321), width:  16
 Scan time: 10.660

The best scores are:                                      opt bits E(85289)
NP_056968 (OMIM: 300294,300918,308205,308800) memb ( 519) 3432 598.2 1.9e-170


>>NP_056968 (OMIM: 300294,300918,308205,308800) membrane  (519 aa)
 initn: 3432 init1: 3432 opt: 3432  Z-score: 3180.9  bits: 598.2 E(85289): 1.9e-170
Smith-Waterman score: 3432; 100.0% identity (100.0% similar) in 519 aa overlap (1-519:1-519)

               10        20        30        40        50        60
pF1KB9 MIPVSLVVVVVGGWTVVYLTDLVLKSSVYFKHSYEDWLENNGLSISPFHIRWQTAVFNRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MIPVSLVVVVVGGWTVVYLTDLVLKSSVYFKHSYEDWLENNGLSISPFHIRWQTAVFNRA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 FYSWGRRKARMLYQWFNFGMVFGVIAMFSSFFLLGKTLMQTLAQMMADSPSSYSSSSSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 FYSWGRRKARMLYQWFNFGMVFGVIAMFSSFFLLGKTLMQTLAQMMADSPSSYSSSSSSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 SSSSSSSSSSSSSSSSLHNEQVLQVVVPGINLPVNQLTYFFTAVLISGVVHEIGHGIAAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 SSSSSSSSSSSSSSSSLHNEQVLQVVVPGINLPVNQLTYFFTAVLISGVVHEIGHGIAAI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 REQVRFNGFGIFLFIIYPGAFVDLFTTHLQLISPVQQLRIFCAGIWHNFVLALLGILALV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 REQVRFNGFGIFLFIIYPGAFVDLFTTHLQLISPVQQLRIFCAGIWHNFVLALLGILALV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 LLPVILLPFYYTGVGVLITEVAEDSPAIGPRGLFVGDLVTHLQDCPVTNVQDWNECLDTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 LLPVILLPFYYTGVGVLITEVAEDSPAIGPRGLFVGDLVTHLQDCPVTNVQDWNECLDTI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 AYEPQIGYCISASTLQQLSFPVRAYKRLDGSTECCNNHSLTDVCFSYRNNFNKRLHTCLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 AYEPQIGYCISASTLQQLSFPVRAYKRLDGSTECCNNHSLTDVCFSYRNNFNKRLHTCLP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 ARKAVEATQVCRTNKDCKKSSSSSFCIIPSLETHTRLIKVKHPPQIDMLYVGHPLHLHYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 ARKAVEATQVCRTNKDCKKSSSSSFCIIPSLETHTRLIKVKHPPQIDMLYVGHPLHLHYT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 VSITSFIPRFNFLSIDLPVVVETFVKYLISLSGALAIVNAVPCFALDGQWILNSFLDATL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 VSITSFIPRFNFLSIDLPVVVETFVKYLISLSGALAIVNAVPCFALDGQWILNSFLDATL
              430       440       450       460       470       480

              490       500       510         
pF1KB9 TSVIGDNDVKDLIGFFILLGGSVLLAANVTLGLWMVTAR
       :::::::::::::::::::::::::::::::::::::::
NP_056 TSVIGDNDVKDLIGFFILLGGSVLLAANVTLGLWMVTAR
              490       500       510         




519 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:28:04 2016 done: Thu Nov  3 23:28:06 2016
 Total Scan time: 10.660 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]