FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9454, 519 aa
  1>>>pF1KB9454 519 - 519 aa - 519 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5088+/-0.000895; mu= 7.8457+/- 0.054
 mean_var=105.4754+/-20.572, 0's: 0 Z-trim(108.3): 38  B-trim: 5 in 1/51
 Lambda= 0.124882
 statistics sampled from 10121 (10146) to 10121 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.312), width:  16
 Scan time:  3.380

The best scores are:                                      opt bits E(32554)
CCDS14201.1 MBTPS2 gene_id:51360|Hs108|chrX        ( 519) 3432 629.0 3.9e-180


>>CCDS14201.1 MBTPS2 gene_id:51360|Hs108|chrX             (519 aa)
 initn: 3432 init1: 3432 opt: 3432  Z-score: 3347.5  bits: 629.0 E(32554): 3.9e-180
Smith-Waterman score: 3432; 100.0% identity (100.0% similar) in 519 aa overlap (1-519:1-519)

               10        20        30        40        50        60
pF1KB9 MIPVSLVVVVVGGWTVVYLTDLVLKSSVYFKHSYEDWLENNGLSISPFHIRWQTAVFNRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MIPVSLVVVVVGGWTVVYLTDLVLKSSVYFKHSYEDWLENNGLSISPFHIRWQTAVFNRA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 FYSWGRRKARMLYQWFNFGMVFGVIAMFSSFFLLGKTLMQTLAQMMADSPSSYSSSSSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FYSWGRRKARMLYQWFNFGMVFGVIAMFSSFFLLGKTLMQTLAQMMADSPSSYSSSSSSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 SSSSSSSSSSSSSSSSLHNEQVLQVVVPGINLPVNQLTYFFTAVLISGVVHEIGHGIAAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SSSSSSSSSSSSSSSSLHNEQVLQVVVPGINLPVNQLTYFFTAVLISGVVHEIGHGIAAI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 REQVRFNGFGIFLFIIYPGAFVDLFTTHLQLISPVQQLRIFCAGIWHNFVLALLGILALV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 REQVRFNGFGIFLFIIYPGAFVDLFTTHLQLISPVQQLRIFCAGIWHNFVLALLGILALV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 LLPVILLPFYYTGVGVLITEVAEDSPAIGPRGLFVGDLVTHLQDCPVTNVQDWNECLDTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LLPVILLPFYYTGVGVLITEVAEDSPAIGPRGLFVGDLVTHLQDCPVTNVQDWNECLDTI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 AYEPQIGYCISASTLQQLSFPVRAYKRLDGSTECCNNHSLTDVCFSYRNNFNKRLHTCLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 AYEPQIGYCISASTLQQLSFPVRAYKRLDGSTECCNNHSLTDVCFSYRNNFNKRLHTCLP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 ARKAVEATQVCRTNKDCKKSSSSSFCIIPSLETHTRLIKVKHPPQIDMLYVGHPLHLHYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ARKAVEATQVCRTNKDCKKSSSSSFCIIPSLETHTRLIKVKHPPQIDMLYVGHPLHLHYT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 VSITSFIPRFNFLSIDLPVVVETFVKYLISLSGALAIVNAVPCFALDGQWILNSFLDATL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VSITSFIPRFNFLSIDLPVVVETFVKYLISLSGALAIVNAVPCFALDGQWILNSFLDATL
              430       440       450       460       470       480

              490       500       510         
pF1KB9 TSVIGDNDVKDLIGFFILLGGSVLLAANVTLGLWMVTAR
       :::::::::::::::::::::::::::::::::::::::
CCDS14 TSVIGDNDVKDLIGFFILLGGSVLLAANVTLGLWMVTAR
              490       500       510         




519 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:28:03 2016 done: Thu Nov  3 23:28:04 2016
 Total Scan time:  3.380 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]