FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9451, 332 aa
  1>>>pF1KB9451 332 - 332 aa - 332 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.0626+/-0.000403; mu= -12.9465+/- 0.025
 mean_var=446.5607+/-90.409, 0's: 0 Z-trim(124.6): 22  B-trim: 62 in 1/61
 Lambda= 0.060692
 statistics sampled from 46408 (46464) to 46408 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.795), E-opt: 0.2 (0.545), width:  16
 Scan time: 10.430

The best scores are:                                      opt bits E(85289)
NP_002347 (OMIM: 177061) myristoylated alanine-ric ( 332) 2119 199.0 1.2e-50
NP_075385 (OMIM: 602940) MARCKS-related protein [H ( 195)  310 40.4  0.0038


>>NP_002347 (OMIM: 177061) myristoylated alanine-rich C-  (332 aa)
 initn: 2119 init1: 2119 opt: 2119  Z-score: 1030.5  bits: 199.0 E(85289): 1.2e-50
Smith-Waterman score: 2119; 100.0% identity (100.0% similar) in 332 aa overlap (1-332:1-332)

               10        20        30        40        50        60
pF1KB9 MGAQFSKTAAKGEAAAERPGEAAVASSPSKANGQENGHVKVNGDASPAAAESGAKEELQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MGAQFSKTAAKGEAAAERPGEAAVASSPSKANGQENGHVKVNGDASPAAAESGAKEELQA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 NGSAPAADKEEPAAAGSGAASPSAAEKGEPAAAAAPEAGASPVEKEAPAEGEAAEPGSPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 NGSAPAADKEEPAAAGSGAASPSAAEKGEPAAAAAPEAGASPVEKEAPAEGEAAEPGSPT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 AAEGEAASAASSTSSPKAEDGATPSPSNETPKKKKKRFSFKKSFKLSGFSFKKNKKEAGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 AAEGEAASAASSTSSPKAEDGATPSPSNETPKKKKKRFSFKKSFKLSGFSFKKNKKEAGE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 GGEAEAPAAEGGKDEAAGGAAAAAAEAGAASGEQAAAPGEEAAAGEEGAAGGDPQEAKPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GGEAEAPAAEGGKDEAAGGAAAAAAEAGAASGEQAAAPGEEAAAGEEGAAGGDPQEAKPQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 EAAVAPEKPPASDETKAAEEPSKVEEKKAEEAGASAAACEAPSAAGPGAPPEQEAAPAEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 EAAVAPEKPPASDETKAAEEPSKVEEKKAEEAGASAAACEAPSAAGPGAPPEQEAAPAEE
              250       260       270       280       290       300

              310       320       330  
pF1KB9 PAAAAASSACAAPSQEAQPECSPEAPPAEAAE
       ::::::::::::::::::::::::::::::::
NP_002 PAAAAASSACAAPSQEAQPECSPEAPPAEAAE
              310       320       330  

>>NP_075385 (OMIM: 602940) MARCKS-related protein [Homo   (195 aa)
 initn: 359 init1: 163 opt: 310  Z-score: 177.5  bits: 40.4 E(85289): 0.0038
Smith-Waterman score: 352; 37.8% identity (55.4% similar) in 267 aa overlap (1-263:1-195)

               10        20        30        40        50        60
pF1KB9 MGAQFSKTAAKGEAAAERPGEAAVASSPSKANGQENGHVKVNGDASPAAAESGAKEELQA
       ::.: :: : .:...::   ::: ..::.::::::::::: ::: ::           ..
NP_075 MGSQSSK-APRGDVTAE---EAA-GASPAKANGQENGHVKSNGDLSP-----------KG
                10            20        30        40               

               70        80        90       100       110       120
pF1KB9 NGSAPAADKEEPAAAGSGAASPSAAEKGEPAAAAAPEAGASPVEKEAPAEGEAAEPGSPT
       .: .: ..  . ::...: :        :::    :           :..:  ::     
NP_075 EGESPPVNGTDEAAGATGDAI-------EPA----P-----------PSQG--AE-----
           50        60                              70            

              130       140       150       160       170       180
pF1KB9 AAEGEAASAASSTSSPKAEDGATPSPSNETPKKKKKRFSFKKSFKLSGFSFKKNKKEAGE
        :.::.                   : .:::::::: ::::: :::::.:::.:.::.: 
NP_075 -AKGEV-------------------PPKETPKKKKK-FSFKKPFKLSGLSFKRNRKEGGG
           80                           90        100       110    

              190       200       210         220       230        
pF1KB9 GGEAEAPAAEGGKDEAAGGAAAAAAEAGAASGEQAAAP--GEEAAAGEEGAAGGDPQEAK
        . : .:. :   ..  :  .: . :. :  :. ::.:   :  : : :..:... .:: 
NP_075 DSSASSPTEE---EQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAASE-EEAG
          120          130       140       150       160        170

      240         250       260       270       280       290      
pF1KB9 PQEAAVAPEKP--PASDETKAAEEPSKVEEKKAEEAGASAAACEAPSAAGPGAPPEQEAA
       ::  :. :  :  : :  : :. : ..                                 
NP_075 PQ--ATEPSTPSGPESGPTPASAEQNE                                 
                180       190                                      




332 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:04:13 2016 done: Fri Nov  4 17:04:14 2016
 Total Scan time: 10.430 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]