FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9451, 332 aa
  1>>>pF1KB9451 332 - 332 aa - 332 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.9268+/-0.000988; mu= -5.2530+/- 0.060
 mean_var=416.0519+/-86.168, 0's: 0 Z-trim(116.7): 31  B-trim: 189 in 1/54
 Lambda= 0.062878
 statistics sampled from 17373 (17398) to 17373 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.784), E-opt: 0.2 (0.534), width:  16
 Scan time:  3.490

The best scores are:                                      opt bits E(32554)
CCDS5101.1 MARCKS gene_id:4082|Hs108|chr6          ( 332) 2119 205.4 5.2e-53


>>CCDS5101.1 MARCKS gene_id:4082|Hs108|chr6               (332 aa)
 initn: 2119 init1: 2119 opt: 2119  Z-score: 1065.2  bits: 205.4 E(32554): 5.2e-53
Smith-Waterman score: 2119; 100.0% identity (100.0% similar) in 332 aa overlap (1-332:1-332)

               10        20        30        40        50        60
pF1KB9 MGAQFSKTAAKGEAAAERPGEAAVASSPSKANGQENGHVKVNGDASPAAAESGAKEELQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 MGAQFSKTAAKGEAAAERPGEAAVASSPSKANGQENGHVKVNGDASPAAAESGAKEELQA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 NGSAPAADKEEPAAAGSGAASPSAAEKGEPAAAAAPEAGASPVEKEAPAEGEAAEPGSPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 NGSAPAADKEEPAAAGSGAASPSAAEKGEPAAAAAPEAGASPVEKEAPAEGEAAEPGSPT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 AAEGEAASAASSTSSPKAEDGATPSPSNETPKKKKKRFSFKKSFKLSGFSFKKNKKEAGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 AAEGEAASAASSTSSPKAEDGATPSPSNETPKKKKKRFSFKKSFKLSGFSFKKNKKEAGE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 GGEAEAPAAEGGKDEAAGGAAAAAAEAGAASGEQAAAPGEEAAAGEEGAAGGDPQEAKPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 GGEAEAPAAEGGKDEAAGGAAAAAAEAGAASGEQAAAPGEEAAAGEEGAAGGDPQEAKPQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 EAAVAPEKPPASDETKAAEEPSKVEEKKAEEAGASAAACEAPSAAGPGAPPEQEAAPAEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 EAAVAPEKPPASDETKAAEEPSKVEEKKAEEAGASAAACEAPSAAGPGAPPEQEAAPAEE
              250       260       270       280       290       300

              310       320       330  
pF1KB9 PAAAAASSACAAPSQEAQPECSPEAPPAEAAE
       ::::::::::::::::::::::::::::::::
CCDS51 PAAAAASSACAAPSQEAQPECSPEAPPAEAAE
              310       320       330  




332 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:04:12 2016 done: Fri Nov  4 17:04:13 2016
 Total Scan time:  3.490 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]