FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9443, 307 aa
  1>>>pF1KB9443 307 - 307 aa - 307 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8622+/-0.000745; mu= 5.7036+/- 0.046
 mean_var=137.3165+/-27.348, 0's: 0 Z-trim(114.7): 5  B-trim: 3 in 1/54
 Lambda= 0.109449
 statistics sampled from 15219 (15223) to 15219 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.784), E-opt: 0.2 (0.468), width:  16
 Scan time:  2.800

The best scores are:                                      opt bits E(32554)
CCDS11273.1 CDK5R1 gene_id:8851|Hs108|chr17        ( 307) 2038 332.2   3e-91
CCDS2427.1 CDK5R2 gene_id:8941|Hs108|chr2          ( 367)  820 140.0 2.7e-33


>>CCDS11273.1 CDK5R1 gene_id:8851|Hs108|chr17             (307 aa)
 initn: 2038 init1: 2038 opt: 2038  Z-score: 1751.8  bits: 332.2 E(32554): 3e-91
Smith-Waterman score: 2038; 100.0% identity (100.0% similar) in 307 aa overlap (1-307:1-307)

               10        20        30        40        50        60
pF1KB9 MGTVLSLSPSYRKATLFEDGAATVGHYTAVQNSKNAKDKNLKRHSIISVLPWKRIVAVSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MGTVLSLSPSYRKATLFEDGAATVGHYTAVQNSKNAKDKNLKRHSIISVLPWKRIVAVSA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 KKKNSKKVQPNSSYQNNITHLNNENLKKSLSCANLSTFAQPPPAQPPAPPASQLSGSQTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KKKNSKKVQPNSSYQNNITHLNNENLKKSLSCANLSTFAQPPPAQPPAPPASQLSGSQTG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 GSSSVKKAPHPAVTSAGTPKRVIVQASTSELLRCLGEFLCRRCYRLKHLSPTDPVLWLRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GSSSVKKAPHPAVTSAGTPKRVIVQASTSELLRCLGEFLCRRCYRLKHLSPTDPVLWLRS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 VDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSEVGSDHELQAVLLTCLYLSYSYMGNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSEVGSDHELQAVLLTCLYLSYSYMGNE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 ISYPLKPFLVESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLKNESGQEDKKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ISYPLKPFLVESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLKNESGQEDKKR
              250       260       270       280       290       300

              
pF1KB9 LLLGLDR
       :::::::
CCDS11 LLLGLDR
              

>>CCDS2427.1 CDK5R2 gene_id:8941|Hs108|chr2               (367 aa)
 initn: 917 init1: 419 opt: 820  Z-score: 711.2  bits: 140.0 E(32554): 2.7e-33
Smith-Waterman score: 936; 52.0% identity (72.6% similar) in 325 aa overlap (4-292:4-328)

               10                    20        30        40        
pF1KB9 MGTVLSLSPS-----YRKATLFED-------GAATVGHYTAVQNSKNAKDKN-LKRHSI-
          ::::::.      : . : :.       :  ..: : :   .:..: .. ::: :. 
CCDS24 MGTVLSLSPASSAKGRRPGGLPEEKKKAPPAGDEALGGYGAPPVGKGGKGESRLKRPSVL
               10        20        30        40        50        60

         50        60         70           80         90       100 
pF1KB9 ISVLPWKRIVAVSAKKKN-SKKVQPNSSYQNN---ITHLNNENL-KKSLSCANLSTFAQP
       ::.: :::.::.:::::. :::: :. .  .    . . : ::: .:. .  . .  :.:
CCDS24 ISALTWKRLVAASAKKKKGSKKVTPKPASTGPDPLVQQRNRENLLRKGRDPPDGGGTAKP
               70        80        90       100       110       120

                      110       120       130              140     
pF1KB9 ---P-PAQPPA-----PPASQLSGSQTGGSSSVKKAPHPAVTS-------AGTPKRVIVQ
          : :. : :     ::..  ...:  ::.. :  : :  .        .:.:.:::::
CCDS24 LAVPVPTVPAAAATCEPPSGGSAAAQPPGSGGGKPPPPPPPAPQVAPPVPGGSPRRVIVQ
              130       140       150       160       170       180

         150       160       170       180       190       200     
pF1KB9 ASTSELLRCLGEFLCRRCYRLKHLSPTDPVLWLRSVDRSLLLQGWQDQGFITPANVVFLY
       :::.:::::::.:.::::::::.::: . : :.:.:::::::::::::.::::::.::.:
CCDS24 ASTGELLRCLGDFVCRRCYRLKELSPGELVGWFRGVDRSLLLQGWQDQAFITPANLVFVY
              190       200       210       220       230       240

         210        220       230       240       250       260    
pF1KB9 MLCRDVI-SSEVGSDHELQAVLLTCLYLSYSYMGNEISYPLKPFLVESCKEAFWDRCLSV
       .:::. . ..:..:  ::::..::::::.::::::::::::::::::  :: ::.::: .
CCDS24 LLCRESLRGDELASAAELQAAFLTCLYLAYSYMGNEISYPLKPFLVEPDKERFWQRCLRL
              250       260       270       280       290       300

          270       280       290       300                        
pF1KB9 INLMSSKMLQINADPHYFTQVFSDLKNESGQEDKKRLLLGLDR                 
       :. .: .::..:::::.:::::.:::::                                
CCDS24 IQRLSPQMLRLNADPHFFTQVFQDLKNEGEAAASGGGPPSGGAPAASSAARDSCAAGTKH
              310       320       330       340       350       360




307 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:24:16 2016 done: Thu Nov  3 23:24:16 2016
 Total Scan time:  2.800 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]