FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9442, 158 aa
  1>>>pF1KB9442 158 - 158 aa - 158 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5707+/-0.0003; mu= 11.6207+/- 0.019
 mean_var=78.1482+/-15.087, 0's: 0 Z-trim(117.5): 9  B-trim: 0 in 0/54
 Lambda= 0.145082
 statistics sampled from 29545 (29554) to 29545 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.728), E-opt: 0.2 (0.347), width:  16
 Scan time:  5.660

The best scores are:                                      opt bits E(85289)
NP_001198 (OMIM: 602542) transcription factor BTF3 ( 162)  804 176.9 1.2e-44
NP_001032726 (OMIM: 602542) transcription factor B ( 206)  804 177.0 1.5e-44


>>NP_001198 (OMIM: 602542) transcription factor BTF3 iso  (162 aa)
 initn: 808 init1: 689 opt: 804  Z-score: 922.5  bits: 176.9 E(85289): 1.2e-44
Smith-Waterman score: 804; 81.0% identity (93.7% similar) in 158 aa overlap (1-158:6-162)

                    10        20        30        40        50     
pF1KB9      MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIE
            :::::::::::::::::::::::::::::::::::::::: :::::.::::.:::
NP_001 MKETIMNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIE
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KB9 EVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRK
       ::::. ..:::::::::::::::.::::.::::::.: .:::::.::.:::::::::::.
NP_001 EVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRR
               70        80        90       100       110       120

         120       130       140       150        
pF1KB9 LAEQFPRQVLDSKAPKPEDIDEEDDDVPDLVENFDEASKNEAN
       ::: .:.: .:.:::     ...::.:::::::::::::::::
NP_001 LAEALPKQSVDGKAPLATG-EDDDDEVPDLVENFDEASKNEAN
              130        140       150       160  

>>NP_001032726 (OMIM: 602542) transcription factor BTF3   (206 aa)
 initn: 808 init1: 689 opt: 804  Z-score: 921.0  bits: 177.0 E(85289): 1.5e-44
Smith-Waterman score: 804; 81.0% identity (93.7% similar) in 158 aa overlap (1-158:50-206)

                                             10        20        30
pF1KB9                               MNQEKLAKLQAQVRIGGKGTARRKKKVVHR
                                     ::::::::::::::::::::::::::::::
NP_001 GGCPGGEATLSQPPPRGGTRGQEPQMKETIMNQEKLAKLQAQVRIGGKGTARRKKKVVHR
      20        30        40        50        60        70         

               40        50        60        70        80        90
pF1KB9 TATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAE
       :::::::::: :::::.::::.:::::::. ..:::::::::::::::.::::.::::::
NP_001 TATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAE
      80        90       100       110       120       130         

              100       110       120       130       140       150
pF1KB9 AKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKPEDIDEEDDDVPDLVENFD
       .: .:::::.::.:::::::::::.::: .:.: .:.:::     ...::.:::::::::
NP_001 TKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLATG-EDDDDEVPDLVENFD
     140       150       160       170       180        190        

               
pF1KB9 EASKNEAN
       ::::::::
NP_001 EASKNEAN
      200      




158 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:23:41 2016 done: Thu Nov  3 23:23:41 2016
 Total Scan time:  5.660 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]