FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9442, 158 aa
  1>>>pF1KB9442 158 - 158 aa - 158 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0794+/-0.000705; mu= 14.5099+/- 0.043
 mean_var=73.0978+/-14.201, 0's: 0 Z-trim(109.7): 14  B-trim: 0 in 0/50
 Lambda= 0.150011
 statistics sampled from 11058 (11065) to 11058 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.725), E-opt: 0.2 (0.34), width:  16
 Scan time:  1.670

The best scores are:                                      opt bits E(32554)
CCDS30713.1 BTF3L4 gene_id:91408|Hs108|chr1        ( 158)  998 224.3 2.5e-59
CCDS4019.1 BTF3 gene_id:689|Hs108|chr5             ( 162)  804 182.3 1.1e-46
CCDS34185.1 BTF3 gene_id:689|Hs108|chr5            ( 206)  804 182.4 1.3e-46
CCDS44146.1 BTF3L4 gene_id:91408|Hs108|chr1        ( 100)  646 147.9 1.5e-36
CCDS58001.1 BTF3L4 gene_id:91408|Hs108|chr1        (  78)  343 82.3 6.8e-17


>>CCDS30713.1 BTF3L4 gene_id:91408|Hs108|chr1             (158 aa)
 initn: 998 init1: 998 opt: 998  Z-score: 1178.7  bits: 224.3 E(32554): 2.5e-59
Smith-Waterman score: 998; 100.0% identity (100.0% similar) in 158 aa overlap (1-158:1-158)

               10        20        30        40        50        60
pF1KB9 MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 KDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 KDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQF
               70        80        90       100       110       120

              130       140       150        
pF1KB9 PRQVLDSKAPKPEDIDEEDDDVPDLVENFDEASKNEAN
       ::::::::::::::::::::::::::::::::::::::
CCDS30 PRQVLDSKAPKPEDIDEEDDDVPDLVENFDEASKNEAN
              130       140       150        

>>CCDS4019.1 BTF3 gene_id:689|Hs108|chr5                  (162 aa)
 initn: 808 init1: 689 opt: 804  Z-score: 951.6  bits: 182.3 E(32554): 1.1e-46
Smith-Waterman score: 804; 81.0% identity (93.7% similar) in 158 aa overlap (1-158:6-162)

                    10        20        30        40        50     
pF1KB9      MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIE
            :::::::::::::::::::::::::::::::::::::::: :::::.::::.:::
CCDS40 MKETIMNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQFSLKKLGVNNISGIE
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KB9 EVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRK
       ::::. ..:::::::::::::::.::::.::::::.: .:::::.::.:::::::::::.
CCDS40 EVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRR
               70        80        90       100       110       120

         120       130       140       150        
pF1KB9 LAEQFPRQVLDSKAPKPEDIDEEDDDVPDLVENFDEASKNEAN
       ::: .:.: .:.:::     ...::.:::::::::::::::::
CCDS40 LAEALPKQSVDGKAPLATG-EDDDDEVPDLVENFDEASKNEAN
              130        140       150       160  

>>CCDS34185.1 BTF3 gene_id:689|Hs108|chr5                 (206 aa)
 initn: 808 init1: 689 opt: 804  Z-score: 950.2  bits: 182.4 E(32554): 1.3e-46
Smith-Waterman score: 804; 81.0% identity (93.7% similar) in 158 aa overlap (1-158:50-206)

                                             10        20        30
pF1KB9                               MNQEKLAKLQAQVRIGGKGTARRKKKVVHR
                                     ::::::::::::::::::::::::::::::
CCDS34 GGCPGGEATLSQPPPRGGTRGQEPQMKETIMNQEKLAKLQAQVRIGGKGTARRKKKVVHR
      20        30        40        50        60        70         

               40        50        60        70        80        90
pF1KB9 TATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAE
       :::::::::: :::::.::::.:::::::. ..:::::::::::::::.::::.::::::
CCDS34 TATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAE
      80        90       100       110       120       130         

              100       110       120       130       140       150
pF1KB9 AKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKPEDIDEEDDDVPDLVENFD
       .: .:::::.::.:::::::::::.::: .:.: .:.:::     ...::.:::::::::
CCDS34 TKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVDGKAPLATG-EDDDDEVPDLVENFD
     140       150       160       170       180        190        

               
pF1KB9 EASKNEAN
       ::::::::
CCDS34 EASKNEAN
      200      

>>CCDS44146.1 BTF3L4 gene_id:91408|Hs108|chr1             (100 aa)
 initn: 646 init1: 646 opt: 646  Z-score: 769.7  bits: 147.9 E(32554): 1.5e-36
Smith-Waterman score: 646; 100.0% identity (100.0% similar) in 100 aa overlap (59-158:1-100)

       30        40        50        60        70        80        
pF1KB9 HRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGH
                                     ::::::::::::::::::::::::::::::
CCDS44                               MIKDDGTVIHFNNPKVQASLSANTFAITGH
                                             10        20        30

       90       100       110       120       130       140        
pF1KB9 AEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKPEDIDEEDDDVPDLVEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 AEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKPEDIDEEDDDVPDLVEN
               40        50        60        70        80        90

      150        
pF1KB9 FDEASKNEAN
       ::::::::::
CCDS44 FDEASKNEAN
              100

>>CCDS58001.1 BTF3L4 gene_id:91408|Hs108|chr1             (78 aa)
 initn: 340 init1: 340 opt: 343  Z-score: 416.7  bits: 82.3 E(32554): 6.8e-17
Smith-Waterman score: 343; 93.4% identity (95.1% similar) in 61 aa overlap (1-61:1-61)

               10        20        30        40        50        60
pF1KB9 MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEEVNMI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::   .
CCDS58 MNQEKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEESWTV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 KDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQF
       :                                                           
CCDS58 KHQNQKTLMRKMMMFQIL                                          
               70                                                  




158 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:23:40 2016 done: Thu Nov  3 23:23:40 2016
 Total Scan time:  1.670 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]