FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9436, 146 aa
  1>>>pF1KB9436 146 - 146 aa - 146 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.9269+/-0.000765; mu= -4.6647+/- 0.047
 mean_var=320.8726+/-64.395, 0's: 0 Z-trim(119.8): 1  B-trim: 0 in 0/56
 Lambda= 0.071599
 statistics sampled from 21146 (21147) to 21146 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.884), E-opt: 0.2 (0.65), width:  16
 Scan time:  1.930

The best scores are:                                      opt bits E(32554)
CCDS11184.1 MED9 gene_id:55090|Hs108|chr17         ( 146) 1005 115.0 1.6e-26


>>CCDS11184.1 MED9 gene_id:55090|Hs108|chr17              (146 aa)
 initn: 1005 init1: 1005 opt: 1005  Z-score: 589.4  bits: 115.0 E(32554): 1.6e-26
Smith-Waterman score: 1005; 100.0% identity (100.0% similar) in 146 aa overlap (1-146:1-146)

               10        20        30        40        50        60
pF1KB9 MASAGVAAGRQAEDVLPPTSDQPLPDTKPLPPPQPPPVPAPQPQQSPAPRPQSPARAREE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MASAGVAAGRQAEDVLPPTSDQPLPDTKPLPPPQPPPVPAPQPQQSPAPRPQSPARAREE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 ENYSFLPLVHNIIKCMDKDSPEVHQDLNALKSKFQEMRKLISTMPGIHLSPEQQQQQLQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ENYSFLPLVHNIIKCMDKDSPEVHQDLNALKSKFQEMRKLISTMPGIHLSPEQQQQQLQS
               70        80        90       100       110       120

              130       140      
pF1KB9 LREQVRTKNELLQKYKSLCMFEIPKE
       ::::::::::::::::::::::::::
CCDS11 LREQVRTKNELLQKYKSLCMFEIPKE
              130       140      




146 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:02:59 2016 done: Fri Nov  4 17:02:59 2016
 Total Scan time:  1.930 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]