Result of FASTA (ccds) for
pF1KB9434
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9434, 216 aa
1>>>pF1KB9434 216 - 216 aa - 216 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2091+/-0.000782; mu= 13.6939+/- 0.047
mean_var=56.9596+/-11.247, 0's: 0 Z-trim(106.6): 12 B-trim: 46 in 1/50
Lambda= 0.169938
statistics sampled from 9087 (9099) to 9087 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.28), width: 16
Scan time: 1.780
The best scores are: opt bits E(32554)
CCDS6520.1 MOB3B gene_id:79817|Hs108|chr9 ( 216) 1511 378.4 1.9e-105
CCDS12081.1 MOB3A gene_id:126308|Hs108|chr19 ( 217) 1249 314.2 4e-86
CCDS540.1 MOB3C gene_id:148932|Hs108|chr1 ( 216) 1169 294.6 3.2e-80
CCDS539.1 MOB3C gene_id:148932|Hs108|chr1 ( 268) 1169 294.6 3.9e-80
CCDS34002.1 MOB1B gene_id:92597|Hs108|chr4 ( 216) 838 213.4 8.7e-56
CCDS58903.1 MOB1B gene_id:92597|Hs108|chr4 ( 221) 838 213.4 8.9e-56
CCDS46340.1 MOB1A gene_id:55233|Hs108|chr2 ( 216) 835 212.7 1.4e-55
CCDS53591.1 MOB2 gene_id:81532|Hs108|chr11 ( 268) 429 113.2 1.6e-25
>>CCDS6520.1 MOB3B gene_id:79817|Hs108|chr9 (216 aa)
initn: 1511 init1: 1511 opt: 1511 Z-score: 2006.8 bits: 378.4 E(32554): 1.9e-105
Smith-Waterman score: 1511; 100.0% identity (100.0% similar) in 216 aa overlap (1-216:1-216)
10 20 30 40 50 60
pF1KB9 MSIALKQVFNKDKTFRPKRKFEPGTQRFELHKRAQASLNSGVDLKAAVQLPSGEDQNDWV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 MSIALKQVFNKDKTFRPKRKFEPGTQRFELHKRAQASLNSGVDLKAAVQLPSGEDQNDWV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 AVHVVDFFNRINLIYGTICEFCTERTCPVMSGGPKYEYRWQDDLKYKKPTALPAPQYMNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 AVHVVDFFNRINLIYGTICEFCTERTCPVMSGGPKYEYRWQDDLKYKKPTALPAPQYMNL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 LMDWIEVQINNEEIFPTCVGVPFPKNFLQICKKILCRLFRVFVHVYIHHFDRVIVMGAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 LMDWIEVQINNEEIFPTCVGVPFPKNFLQICKKILCRLFRVFVHVYIHHFDRVIVMGAEA
130 140 150 160 170 180
190 200 210
pF1KB9 HVNTCYKHFYYFVTEMNLIDRKELEPLKEMTSRMCH
::::::::::::::::::::::::::::::::::::
CCDS65 HVNTCYKHFYYFVTEMNLIDRKELEPLKEMTSRMCH
190 200 210
>>CCDS12081.1 MOB3A gene_id:126308|Hs108|chr19 (217 aa)
initn: 1249 init1: 1249 opt: 1249 Z-score: 1659.6 bits: 314.2 E(32554): 4e-86
Smith-Waterman score: 1249; 82.1% identity (92.9% similar) in 212 aa overlap (5-216:6-217)
10 20 30 40 50
pF1KB9 MSIALKQVFNKDKTFRPKRKFEPGTQRFELHKRAQASLNSGVDLKAAVQLPSGEDQNDW
::::::::::::::::::::::::::::.::::::.:.::. ::::: ::: :::
CCDS12 MSNPFLKQVFNKDKTFRPKRKFEPGTQRFELHKKAQASLNAGLDLRLAVQLPPGEDLNDW
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 VAVHVVDFFNRINLIYGTICEFCTERTCPVMSGGPKYEYRWQDDLKYKKPTALPAPQYMN
:::::::::::.::::::: . :::..::::::::::::::::. :..::::: ::.::.
CCDS12 VAVHVVDFFNRVNLIYGTISDGCTEQSCPVMSGGPKYEYRWQDEHKFRKPTALSAPRYMD
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 LLMDWIEVQINNEEIFPTCVGVPFPKNFLQICKKILCRLFRVFVHVYIHHFDRVIVMGAE
:::::::.:::::..::: ::.:::::::: .::: ::::::::::::::::. ::.:
CCDS12 LLMDWIEAQINNEDLFPTNVGTPFPKNFLQTVRKILSRLFRVFVHVYIHHFDRIAQMGSE
130 140 150 160 170 180
180 190 200 210
pF1KB9 AHVNTCYKHFYYFVTEMNLIDRKELEPLKEMTSRMCH
:::::::::::::: :..::: ::::::::::.::::
CCDS12 AHVNTCYKHFYYFVKEFGLIDTKELEPLKEMTARMCH
190 200 210
>>CCDS540.1 MOB3C gene_id:148932|Hs108|chr1 (216 aa)
initn: 1169 init1: 1169 opt: 1169 Z-score: 1553.6 bits: 294.6 E(32554): 3.2e-80
Smith-Waterman score: 1169; 71.8% identity (90.3% similar) in 216 aa overlap (1-216:1-216)
10 20 30 40 50 60
pF1KB9 MSIALKQVFNKDKTFRPKRKFEPGTQRFELHKRAQASLNSGVDLKAAVQLPSGEDQNDWV
:.. ::::: :::::::...::::::::::.:.:::::.::.::...:.:: ::. .::.
CCDS54 MALCLKQVFAKDKTFRPRKRFEPGTQRFELYKKAQASLKSGLDLRSVVRLPPGENIDDWI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 AVHVVDFFNRINLIYGTICEFCTERTCPVMSGGPKYEYRWQDDLKYKKPTALPAPQYMNL
:::::::::::::::::. : :.: .::::.:::.:::::::. .:..:. : ::.:: :
CCDS54 AVHVVDFFNRINLIYGTMAERCSETSCPVMAGGPRYEYRWQDERQYRRPAKLSAPRYMAL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 LMDWIEVQINNEEIFPTCVGVPFPKNFLQICKKILCRLFRVFVHVYIHHFDRVIVMGAEA
:::::: ::.::.::: ::::::::: :.: ::: ::::::::::::::: .. :::::
CCDS54 LMDWIEGLINDEEVFPTRVGVPFPKNFQQVCTKILTRLFRVFVHVYIHHFDSILSMGAEA
130 140 150 160 170 180
190 200 210
pF1KB9 HVNTCYKHFYYFVTEMNLIDRKELEPLKEMTSRMCH
::::::::::::. :..:.:..:::::.::: :.::
CCDS54 HVNTCYKHFYYFIREFSLVDQRELEPLREMTERICH
190 200 210
>>CCDS539.1 MOB3C gene_id:148932|Hs108|chr1 (268 aa)
initn: 1169 init1: 1169 opt: 1169 Z-score: 1552.1 bits: 294.6 E(32554): 3.9e-80
Smith-Waterman score: 1169; 71.8% identity (90.3% similar) in 216 aa overlap (1-216:53-268)
10 20 30
pF1KB9 MSIALKQVFNKDKTFRPKRKFEPGTQRFEL
:.. ::::: :::::::...::::::::::
CCDS53 SRRVGMDEMTFHIWYPQVRAPGQQPQAQLAMALCLKQVFAKDKTFRPRKRFEPGTQRFEL
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB9 HKRAQASLNSGVDLKAAVQLPSGEDQNDWVAVHVVDFFNRINLIYGTICEFCTERTCPVM
.:.:::::.::.::...:.:: ::. .::.:::::::::::::::::. : :.: .::::
CCDS53 YKKAQASLKSGLDLRSVVRLPPGENIDDWIAVHVVDFFNRINLIYGTMAERCSETSCPVM
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB9 SGGPKYEYRWQDDLKYKKPTALPAPQYMNLLMDWIEVQINNEEIFPTCVGVPFPKNFLQI
.:::.:::::::. .:..:. : ::.:: ::::::: ::.::.::: ::::::::: :.
CCDS53 AGGPRYEYRWQDERQYRRPAKLSAPRYMALLMDWIEGLINDEEVFPTRVGVPFPKNFQQV
150 160 170 180 190 200
160 170 180 190 200 210
pF1KB9 CKKILCRLFRVFVHVYIHHFDRVIVMGAEAHVNTCYKHFYYFVTEMNLIDRKELEPLKEM
: ::: ::::::::::::::: .. :::::::::::::::::. :..:.:..:::::.::
CCDS53 CTKILTRLFRVFVHVYIHHFDSILSMGAEAHVNTCYKHFYYFIREFSLVDQRELEPLREM
210 220 230 240 250 260
pF1KB9 TSRMCH
: :.::
CCDS53 TERICH
>>CCDS34002.1 MOB1B gene_id:92597|Hs108|chr4 (216 aa)
initn: 848 init1: 740 opt: 838 Z-score: 1115.0 bits: 213.4 E(32554): 8.7e-56
Smith-Waterman score: 838; 55.4% identity (82.7% similar) in 202 aa overlap (13-214:11-211)
10 20 30 40 50 60
pF1KB9 MSIALKQVFNKDKTFRPKRKFEPGTQRFELHKRAQASLNSGVDLKAAVQLPSGEDQNDWV
:::.::... :....:: :.:.:.:.:: .:. ::.:: ::: :.::
CCDS34 MSFLFGSRSSKTFKPKKNIPEGSHQYELLKHAEATLGSG-NLRMAVMLPEGEDLNEWV
10 20 30 40 50
70 80 90 100 110 120
pF1KB9 AVHVVDFFNRINLIYGTICEFCTERTCPVMSGGPKYEYRWQDDLKYKKPTALPAPQYMNL
::..:::::.::..:::: .::::..:::::.::::::.: : . ::: ::.:..
CCDS34 AVNTVDFFNQINMLYGTITDFCTEESCPVMSAGPKYEYHWADGTNIKKPIKCSAPKYIDY
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB9 LMDWIEVQINNEEIFPTCVGVPFPKNFLQICKKILCRLFRVFVHVYIHHFDRVIVMGAEA
:: :.. :...: .::. .::::::::... : :: :::::..:.: .::: :: . ::
CCDS34 LMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILKRLFRVYAHIYHQHFDPVIQLQEEA
120 130 140 150 160 170
190 200 210
pF1KB9 HVNTCYKHFYYFVTEMNLIDRKELEPLKEMTSRMCH
:.:: .::: .:: :.:::::.:: ::.:. ..
CCDS34 HLNTSFKHFIFFVQEFNLIDRRELAPLQELIEKLTSKDR
180 190 200 210
>>CCDS58903.1 MOB1B gene_id:92597|Hs108|chr4 (221 aa)
initn: 848 init1: 740 opt: 838 Z-score: 1114.9 bits: 213.4 E(32554): 8.9e-56
Smith-Waterman score: 838; 55.4% identity (82.7% similar) in 202 aa overlap (13-214:16-216)
10 20 30 40 50
pF1KB9 MSIALKQVFNKDKTFRPKRKFEPGTQRFELHKRAQASLNSGVDLKAAVQLPSGEDQN
:::.::... :....:: :.:.:.:.:: .:. ::.:: ::: :
CCDS58 MEGATDVNESGSRSSKTFKPKKNIPEGSHQYELLKHAEATLGSG-NLRMAVMLPEGEDLN
10 20 30 40 50
60 70 80 90 100 110
pF1KB9 DWVAVHVVDFFNRINLIYGTICEFCTERTCPVMSGGPKYEYRWQDDLKYKKPTALPAPQY
.::::..:::::.::..:::: .::::..:::::.::::::.: : . ::: ::.:
CCDS58 EWVAVNTVDFFNQINMLYGTITDFCTEESCPVMSAGPKYEYHWADGTNIKKPIKCSAPKY
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB9 MNLLMDWIEVQINNEEIFPTCVGVPFPKNFLQICKKILCRLFRVFVHVYIHHFDRVIVMG
.. :: :.. :...: .::. .::::::::... : :: :::::..:.: .::: :: .
CCDS58 IDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILKRLFRVYAHIYHQHFDPVIQLQ
120 130 140 150 160 170
180 190 200 210
pF1KB9 AEAHVNTCYKHFYYFVTEMNLIDRKELEPLKEMTSRMCH
:::.:: .::: .:: :.:::::.:: ::.:. ..
CCDS58 EEAHLNTSFKHFIFFVQEFNLIDRRELAPLQELIEKLTSKDR
180 190 200 210 220
>>CCDS46340.1 MOB1A gene_id:55233|Hs108|chr2 (216 aa)
initn: 845 init1: 737 opt: 835 Z-score: 1111.1 bits: 212.7 E(32554): 1.4e-55
Smith-Waterman score: 835; 54.5% identity (82.2% similar) in 202 aa overlap (13-214:11-211)
10 20 30 40 50 60
pF1KB9 MSIALKQVFNKDKTFRPKRKFEPGTQRFELHKRAQASLNSGVDLKAAVQLPSGEDQNDWV
:::.::... :....:: :.:.:.:.:: .:. ::.:: ::: :.:.
CCDS46 MSFLFSSRSSKTFKPKKNIPEGSHQYELLKHAEATLGSG-NLRQAVMLPEGEDLNEWI
10 20 30 40 50
70 80 90 100 110 120
pF1KB9 AVHVVDFFNRINLIYGTICEFCTERTCPVMSGGPKYEYRWQDDLKYKKPTALPAPQYMNL
::..:::::.::..:::: ::::: .:::::.::.:::.: : . ::: ::.:..
CCDS46 AVNTVDFFNQINMLYGTITEFCTEASCPVMSAGPRYEYHWADGTNIKKPIKCSAPKYIDY
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB9 LMDWIEVQINNEEIFPTCVGVPFPKNFLQICKKILCRLFRVFVHVYIHHFDRVIVMGAEA
:: :.. :...: .::. .::::::::... : :: :::::..:.: .::: :. . ::
CCDS46 LMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILKRLFRVYAHIYHQHFDSVMQLQEEA
120 130 140 150 160 170
190 200 210
pF1KB9 HVNTCYKHFYYFVTEMNLIDRKELEPLKEMTSRMCH
:.:: .::: .:: :.:::::.:: ::.:. ..
CCDS46 HLNTSFKHFIFFVQEFNLIDRRELAPLQELIEKLGSKDR
180 190 200 210
>>CCDS53591.1 MOB2 gene_id:81532|Hs108|chr11 (268 aa)
initn: 252 init1: 252 opt: 429 Z-score: 571.6 bits: 113.2 E(32554): 1.6e-25
Smith-Waterman score: 429; 34.4% identity (67.4% similar) in 215 aa overlap (4-215:31-239)
10 20 30
pF1KB9 MSIALKQVFNKDKTFRPKRKFEPGTQRFELHKR
:...:. :.:. .:. : .:.... . . .
CCDS53 MLGDHCSLPEDQARPGQSLQSGLCCKMVLQAVSKVLRKSKA-KPNGK-KPAAEERKAYLE
10 20 30 40 50
40 50 60 70 80 90
pF1KB9 AQASLNSGVDL--KAAVQLPSGEDQNDWVAVHVVDFFNRINLIYGTICEFCTERTCPVMS
. . .:. : : :: : :.:.: ... ::..::: :.:: :::: .:: .:.
CCDS53 PEHTKARITDFQFKELVVLPREIDLNEWLASNTTTFFHHINLQYSTISEFCTGETCQTMA
60 70 80 90 100 110
100 110 120 130 140 150
pF1KB9 GGPKYEYRWQDDLKYKKPTALPAPQYMNLLMDWIEVQINNEEIFPTCVGVPFPKNFLQIC
. .: : :. : . ::::....:. .. ...:..::: : ::..: ..
CCDS53 VC-NTQYYWYDE--RGKKVKCTAPQYVDFVMSSVQKLVTDEDVFPTKYGREFPSSFESLV
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB9 KKILCR-LFRVFVHVYIHHFDRVIVMGAEAHVNTCYKHFYYFVTEMNLIDRKELEPLKEM
.:: :: ::.:..:.: :: ..... ..:.:: : :: :. :.::.: :: . ..
CCDS53 RKI-CRHLFHVLAHIYWAHFKETLALELHGHLNTLYVHFILFAREFNLLDPKETAIMDDL
180 190 200 210 220 230
pF1KB9 TSRMCH
: .:
CCDS53 TEVLCSGAGGVHSGGSGDGAGSGGPGAQNHVKER
240 250 260
216 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 17:02:31 2016 done: Fri Nov 4 17:02:31 2016
Total Scan time: 1.780 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]