FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9433, 272 aa
  1>>>pF1KB9433 272 - 272 aa - 272 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3375+/-0.000703; mu= 13.1820+/- 0.043
 mean_var=140.5925+/-28.220, 0's: 0 Z-trim(115.0): 18  B-trim: 0 in 0/53
 Lambda= 0.108167
 statistics sampled from 15516 (15525) to 15516 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.795), E-opt: 0.2 (0.477), width:  16
 Scan time:  2.920

The best scores are:                                      opt bits E(32554)
CCDS41697.1 CREBZF gene_id:58487|Hs108|chr11       ( 354) 1784 289.0 3.2e-78


>>CCDS41697.1 CREBZF gene_id:58487|Hs108|chr11            (354 aa)
 initn: 1784 init1: 1784 opt: 1784  Z-score: 1517.9  bits: 289.0 E(32554): 3.2e-78
Smith-Waterman score: 1784; 100.0% identity (100.0% similar) in 272 aa overlap (1-272:83-354)

                                             10        20        30
pF1KB9                               MEEEAIASLPGEETEDMDFLSGLELADLLD
                                     ::::::::::::::::::::::::::::::
CCDS41 RKQQFGDEGELEAGRGSRGGVAVRAPSPEEMEEEAIASLPGEETEDMDFLSGLELADLLD
             60        70        80        90       100       110  

               40        50        60        70        80        90
pF1KB9 PRQPDWHLDPGLSSPGPLSSSGGGSDSGGLWRGDDDDEAAAAEMQRFSDLLQRLLNGIGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PRQPDWHLDPGLSSPGPLSSSGGGSDSGGLWRGDDDDEAAAAEMQRFSDLLQRLLNGIGG
            120       130       140       150       160       170  

              100       110       120       130       140       150
pF1KB9 CSSSSDSGSAEKRRRKSPGGGGGGGSGNDNNQAATKSPRKAAAAAARLNRLKKKEYVMGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 CSSSSDSGSAEKRRRKSPGGGGGGGSGNDNNQAATKSPRKAAAAAARLNRLKKKEYVMGL
            180       190       200       210       220       230  

              160       170       180       190       200       210
pF1KB9 ESRVRGLAAENQELRAENRELGKRVQALQEESRYLRAVLANETGLARLLSRLSGVGLRLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ESRVRGLAAENQELRAENRELGKRVQALQEESRYLRAVLANETGLARLLSRLSGVGLRLT
            240       250       260       270       280       290  

              220       230       240       250       260       270
pF1KB9 TSLFRDSPAGDHDYALPVGKQKQDLLEEDDSAGGVCLHVDKDKVSVEFCSACARKASSSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TSLFRDSPAGDHDYALPVGKQKQDLLEEDDSAGGVCLHVDKDKVSVEFCSACARKASSSL
            300       310       320       330       340       350  

         
pF1KB9 KM
       ::
CCDS41 KM
         




272 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:22:31 2016 done: Thu Nov  3 23:22:31 2016
 Total Scan time:  2.920 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]