FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9422, 571 aa
  1>>>pF1KB9422 571 - 571 aa - 571 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.9288+/-0.0013; mu= -6.6906+/- 0.077
 mean_var=353.2673+/-73.630, 0's: 0 Z-trim(110.3): 89  B-trim: 0 in 0/51
 Lambda= 0.068237
 statistics sampled from 11427 (11487) to 11427 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.353), width:  16
 Scan time:  3.790

The best scores are:                                      opt bits E(32554)
CCDS7094.1 OPTN gene_id:10133|Hs108|chr10          ( 577) 3596 368.5 1.3e-101


>>CCDS7094.1 OPTN gene_id:10133|Hs108|chr10               (577 aa)
 initn: 2279 init1: 2279 opt: 3596  Z-score: 1937.9  bits: 368.5 E(32554): 1.3e-101
Smith-Waterman score: 3596; 99.0% identity (99.0% similar) in 577 aa overlap (1-571:1-577)

               10        20        30        40        50        60
pF1KB9 MSHQPLSCLTEKEDSPSESTGNGPPHLAHPNLDTFTPEELLQQMKELLTENHQLKEAMKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 MSHQPLSCLTEKEDSPSESTGNGPPHLAHPNLDTFTPEELLQQMKELLTENHQLKEAMKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 NNQAMKGRFEELSAWTEKQKEERQFFEIQSKEAKERLMALSHENEKLKEELGKLKGKSER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 NNQAMKGRFEELSAWTEKQKEERQFFEIQSKEAKERLMALSHENEKLKEELGKLKGKSER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 SSEDPTDDSRLPRAEAEQEKDQLRTQVVRLQAEKADLLGIVSELQLKLNSSGSSEDSFVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 SSEDPTDDSRLPRAEAEQEKDQLRTQVVRLQAEKADLLGIVSELQLKLNSSGSSEDSFVE
              130       140       150       160       170       180

              190       200             210       220       230    
pF1KB9 IRMAEGEAEGSVKEIKHSPGPTRTVSTGT------SRSADGAKNYFEHEELTVSQLLLCL
       :::::::::::::::::::::::::::::      :::::::::::::::::::::::::
CCDS70 IRMAEGEAEGSVKEIKHSPGPTRTVSTGTALSKYRSRSADGAKNYFEHEELTVSQLLLCL
              190       200       210       220       230       240

          240       250       260       270       280       290    
pF1KB9 REGNQKVERLEVALKEAKERVSDFEKKTSNRSEIETQTEGSTEKENDEEKGPETVGSEVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 REGNQKVERLEVALKEAKERVSDFEKKTSNRSEIETQTEGSTEKENDEEKGPETVGSEVE
              250       260       270       280       290       300

          300       310       320       330       340       350    
pF1KB9 ALNLQVTSLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSAIPSELNEKQELVYTNKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 ALNLQVTSLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSAIPSELNEKQELVYTNKK
              310       320       330       340       350       360

          360       370       380       390       400       410    
pF1KB9 LELQVESMLSEIKMEQAKTEDEKSKLTVLQMTHNKLLQEHNNALKTIEELTRKESEKVDR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 LELQVESMLSEIKMEQAKTEDEKSKLTVLQMTHNKLLQEHNNALKTIEELTRKESEKVDR
              370       380       390       400       410       420

          420       430       440       450       460       470    
pF1KB9 AVLKELSEKLELAEKALASKQLQMDEMKQTIAKQEEDLETMTILRAQMEVYCSDFHAERA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 AVLKELSEKLELAEKALASKQLQMDEMKQTIAKQEEDLETMTILRAQMEVYCSDFHAERA
              430       440       450       460       470       480

          480       490       500       510       520       530    
pF1KB9 AREKIHEEKEQLALQLAVLLKENDAFEDGGRQSLMEMQSRHGARTSDSDQQAYLVQRGAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 AREKIHEEKEQLALQLAVLLKENDAFEDGGRQSLMEMQSRHGARTSDSDQQAYLVQRGAE
              490       500       510       520       530       540

          540       550       560       570 
pF1KB9 DRDWRQQRNIPIHSCPKCGEVLPDIDTLQIHVMDCII
       :::::::::::::::::::::::::::::::::::::
CCDS70 DRDWRQQRNIPIHSCPKCGEVLPDIDTLQIHVMDCII
              550       560       570       




571 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:17:32 2016 done: Thu Nov  3 23:17:32 2016
 Total Scan time:  3.790 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]