Result of FASTA (omim) for
pF1KB9409
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9409, 289 aa
1>>>pF1KB9409 289 - 289 aa - 289 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1677+/-0.000352; mu= 15.8923+/- 0.022
mean_var=64.1065+/-13.165, 0's: 0 Z-trim(113.7): 56 B-trim: 1871 in 2/50
Lambda= 0.160186
statistics sampled from 23167 (23229) to 23167 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.644), E-opt: 0.2 (0.272), width: 16
Scan time: 7.460
The best scores are: opt bits E(85289)
NP_001750 (OMIM: 123833,615938) G1/S-specific cycl ( 289) 1928 454.2 1.4e-127
NP_444284 (OMIM: 168461,193300,254500) G1/S-specif ( 295) 1190 283.6 3e-76
NP_001751 (OMIM: 123834) G1/S-specific cyclin-D3 i ( 292) 1174 279.9 3.9e-75
NP_001274356 (OMIM: 123834) G1/S-specific cyclin-D ( 242) 923 221.9 9.6e-58
XP_011513273 (OMIM: 123834) PREDICTED: G1/S-specif ( 276) 862 207.8 1.9e-53
NP_001129489 (OMIM: 123834) G1/S-specific cyclin-D ( 211) 819 197.8 1.5e-50
NP_001129597 (OMIM: 123834) G1/S-specific cyclin-D ( 220) 548 135.2 1.1e-31
XP_011513274 (OMIM: 123834) PREDICTED: G1/S-specif ( 195) 507 125.7 7e-29
XP_011533597 (OMIM: 604036) PREDICTED: cyclin-A1 i ( 421) 303 78.7 2.1e-14
XP_011533596 (OMIM: 604036) PREDICTED: cyclin-A1 i ( 421) 303 78.7 2.1e-14
NP_001104516 (OMIM: 604036) cyclin-A1 isoform c [H ( 421) 303 78.7 2.1e-14
XP_011533598 (OMIM: 604036) PREDICTED: cyclin-A1 i ( 421) 303 78.7 2.1e-14
NP_001104517 (OMIM: 604036) cyclin-A1 isoform c [H ( 421) 303 78.7 2.1e-14
NP_001104515 (OMIM: 604036) cyclin-A1 isoform b [H ( 464) 303 78.8 2.2e-14
NP_003905 (OMIM: 604036) cyclin-A1 isoform a [Homo ( 465) 303 78.8 2.2e-14
XP_011515668 (OMIM: 603775) PREDICTED: G1/S-specif ( 288) 294 76.6 6.4e-14
NP_001274363 (OMIM: 123834) G1/S-specific cyclin-D ( 96) 288 74.9 6.7e-14
NP_001129598 (OMIM: 123834) G1/S-specific cyclin-D ( 96) 288 74.9 6.7e-14
XP_016869448 (OMIM: 603775) PREDICTED: G1/S-specif ( 404) 295 76.9 7.2e-14
NP_477097 (OMIM: 603775) G1/S-specific cyclin-E2 [ ( 404) 295 76.9 7.2e-14
XP_016869447 (OMIM: 603775) PREDICTED: G1/S-specif ( 404) 295 76.9 7.2e-14
XP_016869446 (OMIM: 603775) PREDICTED: G1/S-specif ( 404) 295 76.9 7.2e-14
NP_001228 (OMIM: 123835) cyclin-A2 [Homo sapiens] ( 432) 293 76.4 1e-13
NP_001309191 (OMIM: 123837) G1/S-specific cyclin-E ( 395) 271 71.3 3.3e-12
XP_011525742 (OMIM: 123837) PREDICTED: G1/S-specif ( 407) 271 71.3 3.4e-12
NP_001229 (OMIM: 123837) G1/S-specific cyclin-E1 i ( 410) 271 71.3 3.4e-12
NP_114172 (OMIM: 123836) G2/mitotic-specific cycli ( 433) 244 65.1 2.7e-10
NP_001309188 (OMIM: 123837) G1/S-specific cyclin-E ( 365) 231 62.1 1.9e-09
NP_004692 (OMIM: 602755) G2/mitotic-specific cycli ( 398) 231 62.1 2e-09
NP_001752 (OMIM: 600227) cyclin-F isoform 1 [Homo ( 786) 212 57.9 7.4e-08
XP_016879311 (OMIM: 600227) PREDICTED: cyclin-F is ( 867) 212 57.9 8e-08
NP_066970 (OMIM: 607752,615872) cyclin-O [Homo sap ( 350) 202 55.3 1.9e-07
NP_001310467 (OMIM: 600227) cyclin-F isoform 2 [Ho ( 478) 196 54.0 6.4e-07
NP_954854 (OMIM: 601578) cyclin-G1 [Homo sapiens] ( 295) 190 52.5 1.1e-06
NP_004051 (OMIM: 601578) cyclin-G1 [Homo sapiens] ( 295) 190 52.5 1.1e-06
NP_004345 (OMIM: 603203) cyclin-G2 [Homo sapiens] ( 344) 163 46.3 9.6e-05
XP_011530700 (OMIM: 603203) PREDICTED: cyclin-G2 i ( 344) 163 46.3 9.6e-05
XP_011530701 (OMIM: 603203) PREDICTED: cyclin-G2 i ( 344) 163 46.3 9.6e-05
NP_149020 (OMIM: 300456) G2/mitotic-specific cycli (1395) 169 48.1 0.00012
XP_016885407 (OMIM: 300456) PREDICTED: G2/mitotic- (1395) 169 48.1 0.00012
XP_016885406 (OMIM: 300456) PREDICTED: G2/mitotic- (1396) 169 48.1 0.00012
XP_016885405 (OMIM: 300456) PREDICTED: G2/mitotic- (1403) 169 48.1 0.00012
XP_016885402 (OMIM: 300456) PREDICTED: G2/mitotic- (1404) 169 48.1 0.00012
XP_016885403 (OMIM: 300456) PREDICTED: G2/mitotic- (1404) 169 48.1 0.00012
XP_016885404 (OMIM: 300456) PREDICTED: G2/mitotic- (1404) 169 48.1 0.00012
NP_001186118 (OMIM: 601953) cyclin-H isoform 2 [Ho ( 270) 133 39.3 0.0096
XP_016865503 (OMIM: 601953) PREDICTED: cyclin-H is ( 272) 133 39.3 0.0096
XP_005248686 (OMIM: 601953) PREDICTED: cyclin-H is ( 276) 133 39.3 0.0097
>>NP_001750 (OMIM: 123833,615938) G1/S-specific cyclin-D (289 aa)
initn: 1928 init1: 1928 opt: 1928 Z-score: 2411.7 bits: 454.2 E(85289): 1.4e-127
Smith-Waterman score: 1928; 100.0% identity (100.0% similar) in 289 aa overlap (1-289:1-289)
10 20 30 40 50 60
pF1KB9 MELLCHEVDPVRRAVRDRNLLRDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MELLCHEVDPVRRAVRDRNLLRDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMVA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 TWMLEVCEEQKCEEEVFPLAMNYLDRFLAGVPTPKSHLQLLGAVCMFLASKLKETSPLTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TWMLEVCEEQKCEEEVFPLAMNYLDRFLAGVPTPKSHLQLLGAVCMFLASKLKETSPLTA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 EKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQQREKLSLIRKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQQREKLSLIRKH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 AQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQQDEEVSSLTCDALTELLAKITNTDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQQDEEVSSLTCDALTELLAKITNTDV
190 200 210 220 230 240
250 260 270 280
pF1KB9 DCLKACQEQIEAVLLNSLQQYRQDQRDGSKSEDELDQASTPTDVRDIDL
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DCLKACQEQIEAVLLNSLQQYRQDQRDGSKSEDELDQASTPTDVRDIDL
250 260 270 280
>>NP_444284 (OMIM: 168461,193300,254500) G1/S-specific c (295 aa)
initn: 1176 init1: 1059 opt: 1190 Z-score: 1489.9 bits: 283.6 E(85289): 3e-76
Smith-Waterman score: 1190; 61.8% identity (81.9% similar) in 293 aa overlap (2-289:4-295)
10 20 30 40 50
pF1KB9 MELLCHEVDPVRRAVRDRNLLRDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRM
.::: ::. .::: : ::: .::::. .: :: :. ::::::::.. : ::..
NP_444 MEHQLLCCEVETIRRAYPDANLL-NDRVLRAMLKAEETCAPSVSYFKCVQKEVLPSMRKI
10 20 30 40 50
60 70 80 90 100 110
pF1KB9 VATWMLEVCEEQKCEEEVFPLAMNYLDRFLAGVPTPKSHLQLLGAVCMFLASKLKETSPL
::::::::::::::::::::::::::::::. :. ::.::::::.:::.:::.::: ::
NP_444 VATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPL
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB9 TAEKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQQREKLSLIR
:::::::::::::.:.:::. ::....::::::::.::::::::.: :.:. .:. ..::
NP_444 TAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIR
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB9 KHAQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQQDEEVSSLTCDALTELLAKITNT
::::::.:::::: :: ::::.:.::: ::. ::. . :. ::..:... .
NP_444 KHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKC
180 190 200 210 220 230
240 250 260 270 280
pF1KB9 DVDCLKACQEQIEAVLLNSLQQYRQDQ-----RDGSKSEDELDQASTPTDVRDIDL
: :::.::::::::.: .::.: .:.. .. . :.:.: : :::::::.:.
NP_444 DPDCLRACQEQIEALLESSLRQAQQNMDPKAAEEEEEEEEEVDLACTPTDVRDVDI
240 250 260 270 280 290
>>NP_001751 (OMIM: 123834) G1/S-specific cyclin-D3 isofo (292 aa)
initn: 1171 init1: 977 opt: 1174 Z-score: 1469.9 bits: 279.9 E(85289): 3.9e-75
Smith-Waterman score: 1174; 61.6% identity (81.8% similar) in 297 aa overlap (1-289:1-292)
10 20 30 40 50
pF1KB9 MELLCHE-VDPVRRAVRDRNLLRDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMV
::::: : . . :: : :: :.::::.:: .::::.:. :::.:::..:.:.::.:.
NP_001 MELLCCEGTRHAPRAGPDPRLLGDQRVLQSLLRLEERYVPRASYFQCVQREIKPHMRKML
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 ATWMLEVCEEQKCEEEVFPLAMNYLDRFLAGVPTPKSHLQLLGAVCMFLASKLKETSPLT
: :::::::::.:::::::::::::::.:. ::: :..:::::::::.:::::.::.:::
NP_001 AYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLT
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 AEKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQQREKLSLIRK
::::::::....:..: .::..:::::::.:::: :::. ::..: :.. .:..:
NP_001 IEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKK
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB9 HAQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQQDEEVSSLTCDALTELLAKITNTD
:::::.::::::. :::::::::::::.:::. :: . :.. : :::::: ::.:.
NP_001 HAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLG----ACSMSGDELTELLAGITGTE
190 200 210 220 230
240 250 260 270 280
pF1KB9 VDCLKACQEQIEAVLLNSLQQYRQDQRD-------GSKSEDELDQASTPTDVRDIDL
::::.::::::::.: .::.. : . . ::.:. .:.:::::: : :
NP_001 VDCLRACQEQIEAALRESLREASQTSSSPAPKAPRGSSSQGP-SQTSTPTDVTAIHL
240 250 260 270 280 290
>>NP_001274356 (OMIM: 123834) G1/S-specific cyclin-D3 is (242 aa)
initn: 915 init1: 746 opt: 923 Z-score: 1157.7 bits: 221.9 E(85289): 9.6e-58
Smith-Waterman score: 923; 62.3% identity (82.3% similar) in 231 aa overlap (66-289:17-242)
40 50 60 70 80 90
pF1KB9 RYLPQCSYFKCVQKDIQPYMRRMVATWMLEVCEEQKCEEEVFPLAMNYLDRFLAGVPTPK
:::::.:::::::::::::::.:. ::: :
NP_001 MKSAGGSGRSLLPSPRVCEEQRCEEEVFPLAMNYLDRYLSCVPTRK
10 20 30 40
100 110 120 130 140 150
pF1KB9 SHLQLLGAVCMFLASKLKETSPLTAEKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVT
..:::::::::.:::::.::.::: ::::::::....:..: .::..:::::::.::::
NP_001 AQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVI
50 60 70 80 90 100
160 170 180 190 200 210
pF1KB9 PHDFIEHILRKLPQQREKLSLIRKHAQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQ
:::. ::..: :.. .:..::::::.::::::. :::::::::::::.:::. ::
NP_001 AHDFLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLG
110 120 130 140 150 160
220 230 240 250 260
pF1KB9 QDEEVSSLTCDALTELLAKITNTDVDCLKACQEQIEAVLLNSLQQYRQDQRD-------G
. :.. : :::::: ::.:.::::.::::::::.: .::.. : . . :
NP_001 ----ACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLREASQTSSSPAPKAPRG
170 180 190 200 210 220
270 280
pF1KB9 SKSEDELDQASTPTDVRDIDL
:.:. .:.:::::: : :
NP_001 SSSQGP-SQTSTPTDVTAIHL
230 240
>>XP_011513273 (OMIM: 123834) PREDICTED: G1/S-specific c (276 aa)
initn: 867 init1: 842 opt: 862 Z-score: 1080.6 bits: 207.8 E(85289): 1.9e-53
Smith-Waterman score: 862; 65.4% identity (86.9% similar) in 191 aa overlap (1-190:1-191)
10 20 30 40 50
pF1KB9 MELLCHE-VDPVRRAVRDRNLLRDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMV
::::: : . . :: : :: :.::::.:: .::::.:. :::.:::..:.:.::.:.
XP_011 MELLCCEGTRHAPRAGPDPRLLGDQRVLQSLLRLEERYVPRASYFQCVQREIKPHMRKML
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 ATWMLEVCEEQKCEEEVFPLAMNYLDRFLAGVPTPKSHLQLLGAVCMFLASKLKETSPLT
: :::::::::.:::::::::::::::.:. ::: :..:::::::::.:::::.::.:::
XP_011 AYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLT
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 AEKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQQREKLSLIRK
::::::::....:..: .::..:::::::.:::: :::. ::..: :.. .:..:
XP_011 IEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKK
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB9 HAQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQQDEEVSSLTCDALTELLAKITNTD
:::::.:::::
XP_011 HAQTFLALCATGLPAGLSGADRSCTQGEPQGSLSDQLQPSAQSPPGLQQPRAQPDQHSYR
190 200 210 220 230 240
>>NP_001129489 (OMIM: 123834) G1/S-specific cyclin-D3 is (211 aa)
initn: 811 init1: 642 opt: 819 Z-score: 1028.6 bits: 197.8 E(85289): 1.5e-50
Smith-Waterman score: 819; 60.2% identity (81.0% similar) in 216 aa overlap (81-289:1-211)
60 70 80 90 100 110
pF1KB9 IQPYMRRMVATWMLEVCEEQKCEEEVFPLAMNYLDRFLAGVPTPKSHLQLLGAVCMFLAS
::::::.:. ::: :..:::::::::.:::
NP_001 MNYLDRYLSCVPTRKAQLQLLGAVCMLLAS
10 20 30
120 130 140 150 160 170
pF1KB9 KLKETSPLTAEKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQQ
::.::.::: ::::::::....:..: .::..:::::::.:::: :::. ::..:
NP_001 KLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLP
40 50 60 70 80 90
180 190 200 210 220 230
pF1KB9 REKLSLIRKHAQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQQDEEVSSLTCDALTE
:.. .:..::::::.::::::. :::::::::::::.:::. :: . :.. : :::
NP_001 RDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLG----ACSMSGDELTE
100 110 120 130 140
240 250 260 270 280
pF1KB9 LLAKITNTDVDCLKACQEQIEAVLLNSLQQYRQDQRD-------GSKSEDELDQASTPTD
::: ::.:.::::.::::::::.: .::.. : . . ::.:. .:.:::::
NP_001 LLAGITGTEVDCLRACQEQIEAALRESLREASQTSSSPAPKAPRGSSSQGP-SQTSTPTD
150 160 170 180 190 200
pF1KB9 VRDIDL
: : :
NP_001 VTAIHL
210
>>NP_001129597 (OMIM: 123834) G1/S-specific cyclin-D3 is (220 aa)
initn: 565 init1: 371 opt: 548 Z-score: 689.9 bits: 135.2 E(85289): 1.1e-31
Smith-Waterman score: 643; 43.4% identity (58.9% similar) in 297 aa overlap (1-289:1-220)
10 20 30 40 50
pF1KB9 MELLCHE-VDPVRRAVRDRNLLRDDRVLQNLLTIEERYLPQCSYFKCVQKDIQPYMRRMV
::::: : . . :: : :: :.::::.:: .::::.:. :::.:::..:.:.::.:.
NP_001 MELLCCEGTRHAPRAGPDPRLLGDQRVLQSLLRLEERYVPRASYFQCVQREIKPHMRKML
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 ATWMLEVCEEQKCEEEVFPLAMNYLDRFLAGVPTPKSHLQLLGAVCMFLASKLKETSPLT
: ::::
NP_001 AYWMLE------------------------------------------------------
120 130 140 150 160 170
pF1KB9 AEKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQQREKLSLIRK
.::..:::::::.:::: :::. ::..: :.. .:..:
NP_001 ------------------DWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKK
70 80 90 100
180 190 200 210 220 230
pF1KB9 HAQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQQDEEVSSLTCDALTELLAKITNTD
:::::.::::::. :::::::::::::.:::. :: . :.. : :::::: ::.:.
NP_001 HAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLG----ACSMSGDELTELLAGITGTE
110 120 130 140 150 160
240 250 260 270 280
pF1KB9 VDCLKACQEQIEAVLLNSLQQYRQDQRD-------GSKSEDELDQASTPTDVRDIDL
::::.::::::::.: .::.. : . . ::.:. .:.:::::: : :
NP_001 VDCLRACQEQIEAALRESLREASQTSSSPAPKAPRGSSSQGP-SQTSTPTDVTAIHL
170 180 190 200 210 220
>>XP_011513274 (OMIM: 123834) PREDICTED: G1/S-specific c (195 aa)
initn: 507 init1: 507 opt: 507 Z-score: 639.5 bits: 125.7 E(85289): 7e-29
Smith-Waterman score: 507; 65.5% identity (89.1% similar) in 110 aa overlap (81-190:1-110)
60 70 80 90 100 110
pF1KB9 IQPYMRRMVATWMLEVCEEQKCEEEVFPLAMNYLDRFLAGVPTPKSHLQLLGAVCMFLAS
::::::.:. ::: :..:::::::::.:::
XP_011 MNYLDRYLSCVPTRKAQLQLLGAVCMLLAS
10 20 30
120 130 140 150 160 170
pF1KB9 KLKETSPLTAEKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQQ
::.::.::: ::::::::....:..: .::..:::::::.:::: :::. ::..:
XP_011 KLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLP
40 50 60 70 80 90
180 190 200 210 220 230
pF1KB9 REKLSLIRKHAQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQQDEEVSSLTCDALTE
:.. .:..::::::.:::::
XP_011 RDRQALVKKHAQTFLALCATGLPAGLSGADRSCTQGEPQGSLSDQLQPSAQSPPGLQQPR
100 110 120 130 140 150
>>XP_011533597 (OMIM: 604036) PREDICTED: cyclin-A1 isofo (421 aa)
initn: 251 init1: 251 opt: 303 Z-score: 379.7 bits: 78.7 E(85289): 2.1e-14
Smith-Waterman score: 309; 29.1% identity (59.4% similar) in 254 aa overlap (24-275:169-407)
10 20 30 40 50
pF1KB9 MELLCHEVDPVRRAVRDRNLLRDDRVLQNLLTIEERYLPQCSYFKCVQKDIQP
... : : : :. :. :.: : ::
XP_011 SPMLVDSSLLSQSEDISSLGTDVINVTEYAEEIYQYLREAEIRHRPKAHYMKK-QPDITE
140 150 160 170 180 190
60 70 80 90 100 110
pF1KB9 YMRRMVATWMLEVCEEQKCEEEVFPLAMNYLDRFLAGVPTPKSHLQLLGAVCMFLASKLK
:: ... :..:: :: : . :.. ::.:.:::::. . . ...:::.:.. :.:::: .
XP_011 GMRTILVDWLVEVGEEYKLRAETLYLAVNFLDRFLSCMSVLRGKLQLVGTAAMLLASKYE
200 210 220 230 240 250
120 130 140 150 160 170
pF1KB9 ETSPLTAEKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQQREK
: : .... ::.. ..::. : ..: : ..:.. : ..:. . ::. .
XP_011 EIYPPEVDEFVYITDDTYTKRQLLKMEHLLLKVLAFDLTVPTTNQFLLQYLRRQGVCVRT
260 270 280 290 300 310
180 190 200 210 220 230
pF1KB9 LSLIRKHAQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQQDEEVSSLTCDA--LTEL
.: . :. ..: .: : : ::.::. ::.: ... : . :
XP_011 ENLAKYVAE--LSLLEAD-PFLKYLPSLIAA----AAFC-------LANYTVNKHFWPET
320 330 340 350 360
240 250 260 270 280
pF1KB9 LAKITNTDVDCLKACQEQIEAVLLNSLQQYRQDQRDGSKSEDELDQASTPTDVRDIDL
:: .:. ... . : ... . :. .. .: :. :. :
XP_011 LAAFTGYSLSEIVPCLSELHKAYLDIPHRPQQAIREKYKASKYLCVSLMEPPAVLLLQ
370 380 390 400 410 420
>>XP_011533596 (OMIM: 604036) PREDICTED: cyclin-A1 isofo (421 aa)
initn: 251 init1: 251 opt: 303 Z-score: 379.7 bits: 78.7 E(85289): 2.1e-14
Smith-Waterman score: 309; 29.1% identity (59.4% similar) in 254 aa overlap (24-275:169-407)
10 20 30 40 50
pF1KB9 MELLCHEVDPVRRAVRDRNLLRDDRVLQNLLTIEERYLPQCSYFKCVQKDIQP
... : : : :. :. :.: : ::
XP_011 SPMLVDSSLLSQSEDISSLGTDVINVTEYAEEIYQYLREAEIRHRPKAHYMKK-QPDITE
140 150 160 170 180 190
60 70 80 90 100 110
pF1KB9 YMRRMVATWMLEVCEEQKCEEEVFPLAMNYLDRFLAGVPTPKSHLQLLGAVCMFLASKLK
:: ... :..:: :: : . :.. ::.:.:::::. . . ...:::.:.. :.:::: .
XP_011 GMRTILVDWLVEVGEEYKLRAETLYLAVNFLDRFLSCMSVLRGKLQLVGTAAMLLASKYE
200 210 220 230 240 250
120 130 140 150 160 170
pF1KB9 ETSPLTAEKLCIYTDNSIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQQREK
: : .... ::.. ..::. : ..: : ..:.. : ..:. . ::. .
XP_011 EIYPPEVDEFVYITDDTYTKRQLLKMEHLLLKVLAFDLTVPTTNQFLLQYLRRQGVCVRT
260 270 280 290 300 310
180 190 200 210 220 230
pF1KB9 LSLIRKHAQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQQDEEVSSLTCDA--LTEL
.: . :. ..: .: : : ::.::. ::.: ... : . :
XP_011 ENLAKYVAE--LSLLEAD-PFLKYLPSLIAA----AAFC-------LANYTVNKHFWPET
320 330 340 350 360
240 250 260 270 280
pF1KB9 LAKITNTDVDCLKACQEQIEAVLLNSLQQYRQDQRDGSKSEDELDQASTPTDVRDIDL
:: .:. ... . : ... . :. .. .: :. :. :
XP_011 LAAFTGYSLSEIVPCLSELHKAYLDIPHRPQQAIREKYKASKYLCVSLMEPPAVLLLQ
370 380 390 400 410 420
289 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 18:25:11 2016 done: Thu Nov 3 18:25:12 2016
Total Scan time: 7.460 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]