Result of FASTA (omim) for
pF1KB9390
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9390, 245 aa
1>>>pF1KB9390 245 - 245 aa - 245 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.2825+/-0.000583; mu= -17.4105+/- 0.036
mean_var=492.7061+/-103.478, 0's: 0 Z-trim(117.2): 58 B-trim: 412 in 1/54
Lambda= 0.057780
statistics sampled from 28990 (29048) to 28990 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.655), E-opt: 0.2 (0.341), width: 16
Scan time: 7.100
The best scores are: opt bits E(85289)
NP_001018008 (OMIM: 115196,191010,611878) tropomyo ( 245) 1471 136.7 3.6e-32
NP_001317280 (OMIM: 115196,191010,611878) tropomyo ( 245) 1375 128.7 9.3e-30
NP_001317275 (OMIM: 115196,191010,611878) tropomyo ( 248) 1374 128.6 9.9e-30
NP_001288218 (OMIM: 115196,191010,611878) tropomyo ( 248) 1339 125.7 7.5e-29
XP_005254704 (OMIM: 115196,191010,611878) PREDICTE ( 251) 1331 125.0 1.2e-28
XP_016878029 (OMIM: 115196,191010,611878) PREDICTE ( 275) 1323 124.4 2e-28
XP_005254707 (OMIM: 115196,191010,611878) PREDICTE ( 248) 1278 120.6 2.5e-27
XP_005254708 (OMIM: 115196,191010,611878) PREDICTE ( 248) 1278 120.6 2.5e-27
NP_001317273 (OMIM: 115196,191010,611878) tropomyo ( 248) 1243 117.7 1.9e-26
NP_001036818 (OMIM: 191030,255310,609284) tropomyo ( 247) 1235 117.0 3e-26
XP_005254702 (OMIM: 115196,191010,611878) PREDICTE ( 365) 1236 117.3 3.8e-26
XP_005254703 (OMIM: 115196,191010,611878) PREDICTE ( 275) 1227 116.4 5.2e-26
XP_005260099 (OMIM: 600317) PREDICTED: tropomyosin ( 248) 1177 112.2 8.7e-25
NP_001036816 (OMIM: 191030,255310,609284) tropomyo ( 248) 1175 112.0 9.8e-25
NP_001036817 (OMIM: 191030,255310,609284) tropomyo ( 247) 1168 111.4 1.5e-24
NP_003281 (OMIM: 600317) tropomyosin alpha-4 chain ( 248) 1164 111.1 1.8e-24
NP_001018005 (OMIM: 115196,191010,611878) tropomyo ( 284) 1139 109.1 8.6e-24
XP_016878028 (OMIM: 115196,191010,611878) PREDICTE ( 365) 1140 109.3 9.7e-24
NP_001265118 (OMIM: 191030,255310,609284) tropomyo ( 248) 1132 108.4 1.2e-23
NP_001288173 (OMIM: 115196,191010,611878) tropomyo ( 284) 1111 106.8 4.3e-23
NP_705935 (OMIM: 191030,255310,609284) tropomyosin ( 248) 1108 106.4 4.7e-23
NP_001018004 (OMIM: 115196,191010,611878) tropomyo ( 284) 1104 106.2 6.5e-23
XP_005254694 (OMIM: 115196,191010,611878) PREDICTE ( 326) 1104 106.2 7.2e-23
XP_005254695 (OMIM: 115196,191010,611878) PREDICTE ( 371) 1096 105.6 1.2e-22
XP_016878023 (OMIM: 115196,191010,611878) PREDICTE ( 395) 1088 105.0 2.1e-22
NP_001018007 (OMIM: 115196,191010,611878) tropomyo ( 284) 1076 103.8 3.3e-22
NP_689476 (OMIM: 191030,255310,609284) tropomyosin ( 285) 1070 103.3 4.7e-22
XP_016878024 (OMIM: 115196,191010,611878) PREDICTE ( 311) 1060 102.5 8.8e-22
NP_000357 (OMIM: 115196,191010,611878) tropomyosin ( 284) 1043 101.1 2.2e-21
XP_016878027 (OMIM: 115196,191010,611878) PREDICTE ( 368) 1043 101.2 2.7e-21
XP_006720730 (OMIM: 115196,191010,611878) PREDICTE ( 368) 1043 101.2 2.7e-21
XP_016870580 (OMIM: 108120,190990,255310,601680,60 ( 284) 1032 100.2 4.2e-21
NP_003280 (OMIM: 108120,190990,255310,601680,60928 ( 284) 1032 100.2 4.2e-21
XP_006722928 (OMIM: 600317) PREDICTED: tropomyosin ( 284) 1029 99.9 5e-21
XP_016882677 (OMIM: 600317) PREDICTED: tropomyosin ( 268) 1016 98.8 1e-20
NP_001138632 (OMIM: 600317) tropomyosin alpha-4 ch ( 284) 1016 98.8 1.1e-20
NP_001018006 (OMIM: 115196,191010,611878) tropomyo ( 284) 1008 98.2 1.7e-20
NP_001288155 (OMIM: 108120,190990,255310,601680,60 ( 284) 1002 97.7 2.4e-20
XP_005254696 (OMIM: 115196,191010,611878) PREDICTE ( 371) 1000 97.6 3.2e-20
XP_016878025 (OMIM: 115196,191010,611878) PREDICTE ( 395) 992 97.0 5.3e-20
XP_016882678 (OMIM: 600317) PREDICTED: tropomyosin ( 245) 984 96.1 6e-20
XP_011526533 (OMIM: 600317) PREDICTED: tropomyosin ( 245) 984 96.1 6e-20
NP_001018020 (OMIM: 115196,191010,611878) tropomyo ( 284) 980 95.8 8.4e-20
XP_016870579 (OMIM: 108120,190990,255310,601680,60 ( 284) 969 94.9 1.6e-19
NP_001288156 (OMIM: 108120,190990,255310,601680,60 ( 284) 969 94.9 1.6e-19
XP_016878026 (OMIM: 115196,191010,611878) PREDICTE ( 311) 964 94.5 2.3e-19
NP_998839 (OMIM: 108120,190990,255310,601680,60928 ( 284) 939 92.4 9e-19
NP_001265119 (OMIM: 191030,255310,609284) tropomyo ( 227) 847 84.7 1.6e-16
NP_001265120 (OMIM: 191030,255310,609284) tropomyo ( 158) 750 76.4 3.3e-14
XP_011526534 (OMIM: 600317) PREDICTED: tropomyosin ( 158) 730 74.7 1e-13
>>NP_001018008 (OMIM: 115196,191010,611878) tropomyosin (245 aa)
initn: 1471 init1: 1471 opt: 1471 Z-score: 698.5 bits: 136.7 E(85289): 3.6e-32
Smith-Waterman score: 1471; 99.6% identity (99.6% similar) in 245 aa overlap (1-245:1-245)
10 20 30 40 50 60
pF1KB9 MAGSSSLEAVRRKIRSLQEQADAAEERAGTLQRELDHERKLRETAEADVASLNRRIQLVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGSSSLEAVRRKIRSLQEQADAAEERAGTLQRELDHERKLRETAEADVASLNRRIQLVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 EELDRAQERLATALQKLEEAEKAADGSERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE
::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
NP_001 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 KEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDQLYQQLEQNRRLTNELKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDQLYQQLEQNRRLTNELKL
190 200 210 220 230 240
pF1KB9 ALNED
:::::
NP_001 ALNED
>>NP_001317280 (OMIM: 115196,191010,611878) tropomyosin (245 aa)
initn: 1375 init1: 1375 opt: 1375 Z-score: 655.3 bits: 128.7 E(85289): 9.3e-30
Smith-Waterman score: 1375; 93.1% identity (96.7% similar) in 245 aa overlap (1-245:1-245)
10 20 30 40 50 60
pF1KB9 MAGSSSLEAVRRKIRSLQEQADAAEERAGTLQRELDHERKLRETAEADVASLNRRIQLVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGSSSLEAVRRKIRSLQEQADAAEERAGTLQRELDHERKLRETAEADVASLNRRIQLVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 EELDRAQERLATALQKLEEAEKAADGSERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE
::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
NP_001 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ
::::::::::::::::::::::::::::::::. .:::.:. . ..::.: : .::::
NP_001 DADRKYEEVARKLVIIESDLERAEERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 KEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDQLYQQLEQNRRLTNELKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDQLYQQLEQNRRLTNELKL
190 200 210 220 230 240
pF1KB9 ALNED
:::::
NP_001 ALNED
>>NP_001317275 (OMIM: 115196,191010,611878) tropomyosin (248 aa)
initn: 1530 init1: 1374 opt: 1374 Z-score: 654.7 bits: 128.6 E(85289): 9.9e-30
Smith-Waterman score: 1374; 93.9% identity (96.7% similar) in 244 aa overlap (1-244:1-244)
10 20 30 40 50 60
pF1KB9 MAGSSSLEAVRRKIRSLQEQADAAEERAGTLQRELDHERKLRETAEADVASLNRRIQLVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGSSSLEAVRRKIRSLQEQADAAEERAGTLQRELDHERKLRETAEADVASLNRRIQLVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 EELDRAQERLATALQKLEEAEKAADGSERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE
::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
NP_001 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 KEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDQLYQQLEQNRRLTNELKL
::::::::::::::::::::::::::::::::::::::::::.:: : . . ...::
NP_001 KEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDH
190 200 210 220 230 240
pF1KB9 ALNED
:::.
NP_001 ALNDMTSI
>>NP_001288218 (OMIM: 115196,191010,611878) tropomyosin (248 aa)
initn: 1481 init1: 1325 opt: 1339 Z-score: 639.0 bits: 125.7 E(85289): 7.5e-29
Smith-Waterman score: 1339; 92.2% identity (95.5% similar) in 244 aa overlap (1-244:1-244)
10 20 30 40 50 60
pF1KB9 MAGSSSLEAVRRKIRSLQEQADAAEERAGTLQRELDHERKLRETAEADVASLNRRIQLVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGSSSLEAVRRKIRSLQEQADAAEERAGTLQRELDHERKLRETAEADVASLNRRIQLVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 EELDRAQERLATALQKLEEAEKAADGSERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE
::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
NP_001 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 KEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDQLYQQLEQNRRLTNELKL
:::::::::::::::::::::::::::::::::::::::::... . :.: . . :
NP_001 KEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQ
190 200 210 220 230 240
pF1KB9 ALNED
.: :
NP_001 TLLELNNM
>>XP_005254704 (OMIM: 115196,191010,611878) PREDICTED: t (251 aa)
initn: 1487 init1: 1331 opt: 1331 Z-score: 635.3 bits: 125.0 E(85289): 1.2e-28
Smith-Waterman score: 1331; 98.7% identity (99.6% similar) in 224 aa overlap (1-224:1-224)
10 20 30 40 50 60
pF1KB9 MAGSSSLEAVRRKIRSLQEQADAAEERAGTLQRELDHERKLRETAEADVASLNRRIQLVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MAGSSSLEAVRRKIRSLQEQADAAEERAGTLQRELDHERKLRETAEADVASLNRRIQLVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 EELDRAQERLATALQKLEEAEKAADGSERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE
::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
XP_005 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 KEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDQLYQQLEQNRRLTNELKL
::::::::::::::::::::::::::::::::::::::::::..
XP_005 KEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDKFLCFTSPKTPSSSWMSH
190 200 210 220 230 240
pF1KB9 ALNED
XP_005 LSELCICLFSS
250
>>XP_016878029 (OMIM: 115196,191010,611878) PREDICTED: t (275 aa)
initn: 1479 init1: 1323 opt: 1323 Z-score: 631.2 bits: 124.4 E(85289): 2e-28
Smith-Waterman score: 1323; 98.2% identity (99.1% similar) in 224 aa overlap (1-224:1-224)
10 20 30 40 50 60
pF1KB9 MAGSSSLEAVRRKIRSLQEQADAAEERAGTLQRELDHERKLRETAEADVASLNRRIQLVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAGSSSLEAVRRKIRSLQEQADAAEERAGTLQRELDHERKLRETAEADVASLNRRIQLVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 EELDRAQERLATALQKLEEAEKAADGSERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE
::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
XP_016 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 KEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDQLYQQLEQNRRLTNELKL
::::::::::::::::::::::::::::::::::::::::: ..
XP_016 KEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEGKILSSVFSLILMVEYQPG
190 200 210 220 230 240
pF1KB9 ALNED
XP_016 KTIFQFKGIHIDTLLCTCTFFLCVLWGFSLWLLNS
250 260 270
>>XP_005254707 (OMIM: 115196,191010,611878) PREDICTED: t (248 aa)
initn: 1436 init1: 1278 opt: 1278 Z-score: 611.5 bits: 120.6 E(85289): 2.5e-27
Smith-Waterman score: 1278; 87.3% identity (93.9% similar) in 244 aa overlap (1-244:1-244)
10 20 30 40 50 60
pF1KB9 MAGSSSLEAVRRKIRSLQEQADAAEERAGTLQRELDHERKLRETAEADVASLNRRIQLVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MAGSSSLEAVRRKIRSLQEQADAAEERAGTLQRELDHERKLRETAEADVASLNRRIQLVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 EELDRAQERLATALQKLEEAEKAADGSERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE
::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
XP_005 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ
::::::::::::::::::::::::::::::::. .:::.:. . ..::.: : .::::
XP_005 DADRKYEEVARKLVIIESDLERAEERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 KEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDQLYQQLEQNRRLTNELKL
::::::::::::::::::::::::::::::::::::::::::.:: : . . ...::
XP_005 KEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDH
190 200 210 220 230 240
pF1KB9 ALNED
:::.
XP_005 ALNDMTSI
>>XP_005254708 (OMIM: 115196,191010,611878) PREDICTED: t (248 aa)
initn: 1436 init1: 1278 opt: 1278 Z-score: 611.5 bits: 120.6 E(85289): 2.5e-27
Smith-Waterman score: 1278; 87.3% identity (93.9% similar) in 244 aa overlap (1-244:1-244)
10 20 30 40 50 60
pF1KB9 MAGSSSLEAVRRKIRSLQEQADAAEERAGTLQRELDHERKLRETAEADVASLNRRIQLVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MAGSSSLEAVRRKIRSLQEQADAAEERAGTLQRELDHERKLRETAEADVASLNRRIQLVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 EELDRAQERLATALQKLEEAEKAADGSERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE
::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
XP_005 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ
::::::::::::::::::::::::::::::::. .:::.:. . ..::.: : .::::
XP_005 DADRKYEEVARKLVIIESDLERAEERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 KEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDQLYQQLEQNRRLTNELKL
::::::::::::::::::::::::::::::::::::::::::.:: : . . ...::
XP_005 KEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDH
190 200 210 220 230 240
pF1KB9 ALNED
:::.
XP_005 ALNDMTSM
>>NP_001317273 (OMIM: 115196,191010,611878) tropomyosin (248 aa)
initn: 1387 init1: 1229 opt: 1243 Z-score: 595.7 bits: 117.7 E(85289): 1.9e-26
Smith-Waterman score: 1243; 85.7% identity (92.6% similar) in 244 aa overlap (1-244:1-244)
10 20 30 40 50 60
pF1KB9 MAGSSSLEAVRRKIRSLQEQADAAEERAGTLQRELDHERKLRETAEADVASLNRRIQLVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGSSSLEAVRRKIRSLQEQADAAEERAGTLQRELDHERKLRETAEADVASLNRRIQLVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 EELDRAQERLATALQKLEEAEKAADGSERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE
::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
NP_001 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ
::::::::::::::::::::::::::::::::. .:::.:. . ..::.: : .::::
NP_001 DADRKYEEVARKLVIIESDLERAEERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 KEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDQLYQQLEQNRRLTNELKL
:::::::::::::::::::::::::::::::::::::::::... . :.: . . :
NP_001 KEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQ
190 200 210 220 230 240
pF1KB9 ALNED
.: :
NP_001 TLLELNNM
>>NP_001036818 (OMIM: 191030,255310,609284) tropomyosin (247 aa)
initn: 1446 init1: 1235 opt: 1235 Z-score: 592.1 bits: 117.0 E(85289): 3e-26
Smith-Waterman score: 1235; 82.4% identity (95.5% similar) in 244 aa overlap (1-244:1-244)
10 20 30 40 50 60
pF1KB9 MAGSSSLEAVRRKIRSLQEQADAAEERAGTLQRELDHERKLRETAEADVASLNRRIQLVE
::: ...:::.:::. ::.::: ::::: ::::.. ::. :: :::.::::::::::::
NP_001 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 EELDRAQERLATALQKLEEAEKAADGSERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE
::::::::::::::::::::::::: :::::::::.:: :::::::.:::::::::::::
NP_001 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ
.::::::::::::::::.::::.::::::.:.::.:::::::.:::::::::::::::::
NP_001 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 KEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDQLYQQLEQNRRLTNELKL
:::.::::::.:.:::::::::::::::::.::::.:::::..::.:::.:: :.:::::
NP_001 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEERLYSQLERNRLLSNELKL
190 200 210 220 230 240
pF1KB9 ALNED
.:..
NP_001 TLHDLCD
245 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 18:23:31 2016 done: Thu Nov 3 18:23:32 2016
Total Scan time: 7.100 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]