Result of FASTA (omim) for
pF1KB9385
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9385, 324 aa
1>>>pF1KB9385 324 - 324 aa - 324 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3378+/-0.000449; mu= 10.8731+/- 0.027
mean_var=145.0559+/-32.474, 0's: 0 Z-trim(112.8): 130 B-trim: 129 in 1/51
Lambda= 0.106489
statistics sampled from 21649 (21819) to 21649 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.625), E-opt: 0.2 (0.256), width: 16
Scan time: 7.340
The best scores are: opt bits E(85289)
NP_001007794 (OMIM: 603719) mitotic checkpoint pro ( 326) 2227 354.3 2e-97
NP_004716 (OMIM: 603719) mitotic checkpoint protei ( 328) 2227 354.3 2e-97
XP_011527390 (OMIM: 603343) PREDICTED: mRNA export ( 368) 663 114.1 4.6e-25
NP_003601 (OMIM: 603343) mRNA export factor [Homo ( 368) 663 114.1 4.6e-25
NP_001015885 (OMIM: 603343) mRNA export factor [Ho ( 368) 663 114.1 4.6e-25
XP_005260639 (OMIM: 603343) PREDICTED: mRNA export ( 368) 663 114.1 4.6e-25
XP_011527391 (OMIM: 603343) PREDICTED: mRNA export ( 368) 663 114.1 4.6e-25
XP_005260640 (OMIM: 603343) PREDICTED: mRNA export ( 406) 663 114.1 4.9e-25
XP_011527389 (OMIM: 603343) PREDICTED: mRNA export ( 357) 659 113.5 6.9e-25
XP_016883597 (OMIM: 603343) PREDICTED: mRNA export ( 357) 659 113.5 6.9e-25
NP_004805 (OMIM: 607797) U5 small nuclear ribonucl ( 357) 253 51.1 4.1e-06
NP_001271359 (OMIM: 616194) U3 small nucleolar RNA ( 499) 218 45.9 0.00021
NP_115551 (OMIM: 616194) U3 small nucleolar RNA-as ( 518) 218 45.9 0.00022
XP_011541982 (OMIM: 616194) PREDICTED: U3 small nu ( 518) 218 45.9 0.00022
XP_011530390 (OMIM: 606278) PREDICTED: F-box/WD re ( 540) 203 43.6 0.0011
NP_001013433 (OMIM: 606278) F-box/WD repeat-contai ( 589) 203 43.6 0.0012
NP_060785 (OMIM: 606278) F-box/WD repeat-containin ( 627) 203 43.7 0.0012
XP_011530388 (OMIM: 606278) PREDICTED: F-box/WD re ( 679) 203 43.7 0.0013
XP_011530389 (OMIM: 606278) PREDICTED: F-box/WD re ( 679) 203 43.7 0.0013
XP_011530387 (OMIM: 606278) PREDICTED: F-box/WD re ( 707) 203 43.7 0.0013
XP_011530386 (OMIM: 606278) PREDICTED: F-box/WD re ( 707) 203 43.7 0.0013
NP_361014 (OMIM: 606278) F-box/WD repeat-containin ( 707) 203 43.7 0.0013
XP_016863851 (OMIM: 606278) PREDICTED: F-box/WD re ( 707) 203 43.7 0.0013
XP_011530385 (OMIM: 606278) PREDICTED: F-box/WD re ( 707) 203 43.7 0.0013
NP_001186706 (OMIM: 614784,615973) POC1 centriolar ( 436) 192 41.8 0.0031
NP_758440 (OMIM: 614784,615973) POC1 centriolar pr ( 478) 192 41.9 0.0033
XP_016863185 (OMIM: 609005) PREDICTED: WD repeat-c (1228) 194 42.6 0.0051
XP_016863184 (OMIM: 609005) PREDICTED: WD repeat-c (1235) 194 42.6 0.0051
XP_016863182 (OMIM: 609005) PREDICTED: WD repeat-c (1252) 194 42.6 0.0051
XP_016863183 (OMIM: 609005) PREDICTED: WD repeat-c (1252) 194 42.6 0.0051
XP_016863181 (OMIM: 609005) PREDICTED: WD repeat-c (1259) 194 42.6 0.0051
XP_016863180 (OMIM: 609005) PREDICTED: WD repeat-c (1259) 194 42.6 0.0051
XP_016863186 (OMIM: 609005) PREDICTED: WD repeat-c ( 982) 190 41.9 0.0067
XP_005262782 (OMIM: 609005) PREDICTED: WD repeat-c (1216) 190 42.0 0.0077
NP_851782 (OMIM: 609005) WD repeat-containing prot (1283) 190 42.0 0.008
XP_011529884 (OMIM: 609005) PREDICTED: WD repeat-c (1290) 190 42.0 0.008
NP_079498 (OMIM: 611059) WD repeat-containing prot ( 313) 181 40.0 0.008
XP_016863178 (OMIM: 609005) PREDICTED: WD repeat-c (1307) 190 42.0 0.0081
XP_016863179 (OMIM: 609005) PREDICTED: WD repeat-c (1307) 190 42.0 0.0081
XP_016863175 (OMIM: 609005) PREDICTED: WD repeat-c (1314) 190 42.0 0.0081
XP_016863176 (OMIM: 609005) PREDICTED: WD repeat-c (1314) 190 42.0 0.0081
XP_016863177 (OMIM: 609005) PREDICTED: WD repeat-c (1314) 190 42.0 0.0081
NP_733828 (OMIM: 609005) WD repeat-containing prot (1322) 190 42.0 0.0081
NP_004757 (OMIM: 606990) coatomer subunit beta' [H ( 906) 187 41.4 0.0087
NP_115708 (OMIM: 616850) WD repeat domain-containi ( 315) 179 39.7 0.01
NP_001093207 (OMIM: 616850) WD repeat domain-conta ( 315) 179 39.7 0.01
>>NP_001007794 (OMIM: 603719) mitotic checkpoint protein (326 aa)
initn: 2227 init1: 2227 opt: 2227 Z-score: 1870.2 bits: 354.3 E(85289): 2e-97
Smith-Waterman score: 2227; 100.0% identity (100.0% similar) in 324 aa overlap (1-324:1-324)
10 20 30 40 50 60
pF1KB9 MTGSNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTGSNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 DCAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DCAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 KLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 QTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 SFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYE
250 260 270 280 290 300
310 320
pF1KB9 MDDTEHPEDGIFIRQVTDAETKPK
::::::::::::::::::::::::
NP_001 MDDTEHPEDGIFIRQVTDAETKPKST
310 320
>>NP_004716 (OMIM: 603719) mitotic checkpoint protein BU (328 aa)
initn: 2227 init1: 2227 opt: 2227 Z-score: 1870.2 bits: 354.3 E(85289): 2e-97
Smith-Waterman score: 2227; 100.0% identity (100.0% similar) in 324 aa overlap (1-324:1-324)
10 20 30 40 50 60
pF1KB9 MTGSNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MTGSNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 DCAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DCAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 KLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 QTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 QTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 SFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYE
250 260 270 280 290 300
310 320
pF1KB9 MDDTEHPEDGIFIRQVTDAETKPK
::::::::::::::::::::::::
NP_004 MDDTEHPEDGIFIRQVTDAETKPKSPCT
310 320
>>XP_011527390 (OMIM: 603343) PREDICTED: mRNA export fac (368 aa)
initn: 594 init1: 211 opt: 663 Z-score: 571.0 bits: 114.1 E(85289): 4.6e-25
Smith-Waterman score: 674; 35.3% identity (68.5% similar) in 337 aa overlap (6-324:31-365)
10 20 30
pF1KB9 MTGSNEFKLNQPPEDGISSVKFSPNT--SQFLLVS
...... :.:.:. ..::: : ..::...
XP_011 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
10 20 30 40 50 60
40 50 60 70 80
pF1KB9 SWDTSVRLYDVPANSMRL-KYQ--HTGAVLD-CAFYDPTHAWSGGLDHQLKMHDLNTDQE
:: ..:: ..: ... . : : ::: ::: : : ....... :. :: ::...:
XP_011 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
70 80 90 100 110 120
90 100 110 120 130 140
pF1KB9 NLVGTHDAPIRCVEY--CPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEKVYTLSVSG
.. ::::.. ... :. . ..:::::.:.:.:: :. ... ::. : .:
XP_011 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
130 140 150 160 170 180
150 160 170 180 190 200
pF1KB9 DRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQ----GYVLSSIEGRV
.:.:: : ..:..:.:. .: :: ::.: ::. : .:: :..:.::::::
XP_011 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
190 200 210 220 230 240
210 220 230 240 250 260
pF1KB9 AVEYLDPSPEVQKKKYAFKCHRLKENNI---EQIYPVNAISFHNIHNTFATGGSDGFVNI
:..:..: :. : ...::::: . .: ..:: ::.:.:: .:.:.:: :::: ..
XP_011 AIHYINP-PNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF
250 260 270 280 290
270 280 290 300 310
pF1KB9 WDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMY-EMDDTEHPE--DGIFIRQVT
:: . .: .. :.. :...:. .: :::: . . . .:. . ::.:...
XP_011 WDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAA
300 310 320 330 340 350
320
pF1KB9 DAETKPK
. : ::.
XP_011 E-ELKPRNKK
360
>>NP_003601 (OMIM: 603343) mRNA export factor [Homo sapi (368 aa)
initn: 594 init1: 211 opt: 663 Z-score: 571.0 bits: 114.1 E(85289): 4.6e-25
Smith-Waterman score: 674; 35.3% identity (68.5% similar) in 337 aa overlap (6-324:31-365)
10 20 30
pF1KB9 MTGSNEFKLNQPPEDGISSVKFSPNT--SQFLLVS
...... :.:.:. ..::: : ..::...
NP_003 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
10 20 30 40 50 60
40 50 60 70 80
pF1KB9 SWDTSVRLYDVPANSMRL-KYQ--HTGAVLD-CAFYDPTHAWSGGLDHQLKMHDLNTDQE
:: ..:: ..: ... . : : ::: ::: : : ....... :. :: ::...:
NP_003 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
70 80 90 100 110 120
90 100 110 120 130 140
pF1KB9 NLVGTHDAPIRCVEY--CPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEKVYTLSVSG
.. ::::.. ... :. . ..:::::.:.:.:: :. ... ::. : .:
NP_003 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
130 140 150 160 170 180
150 160 170 180 190 200
pF1KB9 DRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQ----GYVLSSIEGRV
.:.:: : ..:..:.:. .: :: ::.: ::. : .:: :..:.::::::
NP_003 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
190 200 210 220 230 240
210 220 230 240 250 260
pF1KB9 AVEYLDPSPEVQKKKYAFKCHRLKENNI---EQIYPVNAISFHNIHNTFATGGSDGFVNI
:..:..: :. : ...::::: . .: ..:: ::.:.:: .:.:.:: :::: ..
NP_003 AIHYINP-PNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF
250 260 270 280 290
270 280 290 300 310
pF1KB9 WDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMY-EMDDTEHPE--DGIFIRQVT
:: . .: .. :.. :...:. .: :::: . . . .:. . ::.:...
NP_003 WDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAA
300 310 320 330 340 350
320
pF1KB9 DAETKPK
. : ::.
NP_003 E-ELKPRNKK
360
>>NP_001015885 (OMIM: 603343) mRNA export factor [Homo s (368 aa)
initn: 594 init1: 211 opt: 663 Z-score: 571.0 bits: 114.1 E(85289): 4.6e-25
Smith-Waterman score: 674; 35.3% identity (68.5% similar) in 337 aa overlap (6-324:31-365)
10 20 30
pF1KB9 MTGSNEFKLNQPPEDGISSVKFSPNT--SQFLLVS
...... :.:.:. ..::: : ..::...
NP_001 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
10 20 30 40 50 60
40 50 60 70 80
pF1KB9 SWDTSVRLYDVPANSMRL-KYQ--HTGAVLD-CAFYDPTHAWSGGLDHQLKMHDLNTDQE
:: ..:: ..: ... . : : ::: ::: : : ....... :. :: ::...:
NP_001 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
70 80 90 100 110 120
90 100 110 120 130 140
pF1KB9 NLVGTHDAPIRCVEY--CPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEKVYTLSVSG
.. ::::.. ... :. . ..:::::.:.:.:: :. ... ::. : .:
NP_001 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
130 140 150 160 170 180
150 160 170 180 190 200
pF1KB9 DRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQ----GYVLSSIEGRV
.:.:: : ..:..:.:. .: :: ::.: ::. : .:: :..:.::::::
NP_001 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
190 200 210 220 230 240
210 220 230 240 250 260
pF1KB9 AVEYLDPSPEVQKKKYAFKCHRLKENNI---EQIYPVNAISFHNIHNTFATGGSDGFVNI
:..:..: :. : ...::::: . .: ..:: ::.:.:: .:.:.:: :::: ..
NP_001 AIHYINP-PNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF
250 260 270 280 290
270 280 290 300 310
pF1KB9 WDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMY-EMDDTEHPE--DGIFIRQVT
:: . .: .. :.. :...:. .: :::: . . . .:. . ::.:...
NP_001 WDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAA
300 310 320 330 340 350
320
pF1KB9 DAETKPK
. : ::.
NP_001 E-ELKPRNKK
360
>>XP_005260639 (OMIM: 603343) PREDICTED: mRNA export fac (368 aa)
initn: 594 init1: 211 opt: 663 Z-score: 571.0 bits: 114.1 E(85289): 4.6e-25
Smith-Waterman score: 674; 35.3% identity (68.5% similar) in 337 aa overlap (6-324:31-365)
10 20 30
pF1KB9 MTGSNEFKLNQPPEDGISSVKFSPNT--SQFLLVS
...... :.:.:. ..::: : ..::...
XP_005 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
10 20 30 40 50 60
40 50 60 70 80
pF1KB9 SWDTSVRLYDVPANSMRL-KYQ--HTGAVLD-CAFYDPTHAWSGGLDHQLKMHDLNTDQE
:: ..:: ..: ... . : : ::: ::: : : ....... :. :: ::...:
XP_005 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
70 80 90 100 110 120
90 100 110 120 130 140
pF1KB9 NLVGTHDAPIRCVEY--CPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEKVYTLSVSG
.. ::::.. ... :. . ..:::::.:.:.:: :. ... ::. : .:
XP_005 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
130 140 150 160 170 180
150 160 170 180 190 200
pF1KB9 DRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQ----GYVLSSIEGRV
.:.:: : ..:..:.:. .: :: ::.: ::. : .:: :..:.::::::
XP_005 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
190 200 210 220 230 240
210 220 230 240 250 260
pF1KB9 AVEYLDPSPEVQKKKYAFKCHRLKENNI---EQIYPVNAISFHNIHNTFATGGSDGFVNI
:..:..: :. : ...::::: . .: ..:: ::.:.:: .:.:.:: :::: ..
XP_005 AIHYINP-PNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF
250 260 270 280 290
270 280 290 300 310
pF1KB9 WDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMY-EMDDTEHPE--DGIFIRQVT
:: . .: .. :.. :...:. .: :::: . . . .:. . ::.:...
XP_005 WDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAA
300 310 320 330 340 350
320
pF1KB9 DAETKPK
. : ::.
XP_005 E-ELKPRNKK
360
>>XP_011527391 (OMIM: 603343) PREDICTED: mRNA export fac (368 aa)
initn: 594 init1: 211 opt: 663 Z-score: 571.0 bits: 114.1 E(85289): 4.6e-25
Smith-Waterman score: 674; 35.3% identity (68.5% similar) in 337 aa overlap (6-324:31-365)
10 20 30
pF1KB9 MTGSNEFKLNQPPEDGISSVKFSPNT--SQFLLVS
...... :.:.:. ..::: : ..::...
XP_011 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
10 20 30 40 50 60
40 50 60 70 80
pF1KB9 SWDTSVRLYDVPANSMRL-KYQ--HTGAVLD-CAFYDPTHAWSGGLDHQLKMHDLNTDQE
:: ..:: ..: ... . : : ::: ::: : : ....... :. :: ::...:
XP_011 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
70 80 90 100 110 120
90 100 110 120 130 140
pF1KB9 NLVGTHDAPIRCVEY--CPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEKVYTLSVSG
.. ::::.. ... :. . ..:::::.:.:.:: :. ... ::. : .:
XP_011 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
130 140 150 160 170 180
150 160 170 180 190 200
pF1KB9 DRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQ----GYVLSSIEGRV
.:.:: : ..:..:.:. .: :: ::.: ::. : .:: :..:.::::::
XP_011 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
190 200 210 220 230 240
210 220 230 240 250 260
pF1KB9 AVEYLDPSPEVQKKKYAFKCHRLKENNI---EQIYPVNAISFHNIHNTFATGGSDGFVNI
:..:..: :. : ...::::: . .: ..:: ::.:.:: .:.:.:: :::: ..
XP_011 AIHYINP-PNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF
250 260 270 280 290
270 280 290 300 310
pF1KB9 WDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMY-EMDDTEHPE--DGIFIRQVT
:: . .: .. :.. :...:. .: :::: . . . .:. . ::.:...
XP_011 WDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAA
300 310 320 330 340 350
320
pF1KB9 DAETKPK
. : ::.
XP_011 E-ELKPRNKK
360
>>XP_005260640 (OMIM: 603343) PREDICTED: mRNA export fac (406 aa)
initn: 594 init1: 211 opt: 663 Z-score: 570.5 bits: 114.1 E(85289): 4.9e-25
Smith-Waterman score: 674; 35.3% identity (68.5% similar) in 337 aa overlap (6-324:69-403)
10 20 30
pF1KB9 MTGSNEFKLNQPPEDGISSVKFSPNT--SQFLLVS
...... :.:.:. ..::: : ..::...
XP_005 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
40 50 60 70 80 90
40 50 60 70 80
pF1KB9 SWDTSVRLYDVPANSMRL-KYQ--HTGAVLD-CAFYDPTHAWSGGLDHQLKMHDLNTDQE
:: ..:: ..: ... . : : ::: ::: : : ....... :. :: ::...:
XP_005 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
100 110 120 130 140 150
90 100 110 120 130 140
pF1KB9 NLVGTHDAPIRCVEY--CPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEKVYTLSVSG
.. ::::.. ... :. . ..:::::.:.:.:: :. ... ::. : .:
XP_005 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
160 170 180 190 200 210
150 160 170 180 190 200
pF1KB9 DRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQ----GYVLSSIEGRV
.:.:: : ..:..:.:. .: :: ::.: ::. : .:: :..:.::::::
XP_005 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
220 230 240 250 260 270
210 220 230 240 250 260
pF1KB9 AVEYLDPSPEVQKKKYAFKCHRLKENNI---EQIYPVNAISFHNIHNTFATGGSDGFVNI
:..:..: :. : ...::::: . .: ..:: ::.:.:: .:.:.:: :::: ..
XP_005 AIHYINP-PNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF
280 290 300 310 320 330
270 280 290 300 310
pF1KB9 WDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMY-EMDDTEHPE--DGIFIRQVT
:: . .: .. :.. :...:. .: :::: . . . .:. . ::.:...
XP_005 WDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAA
340 350 360 370 380 390
320
pF1KB9 DAETKPK
. : ::.
XP_005 E-ELKPRNKK
400
>>XP_011527389 (OMIM: 603343) PREDICTED: mRNA export fac (357 aa)
initn: 594 init1: 211 opt: 659 Z-score: 567.8 bits: 113.5 E(85289): 6.9e-25
Smith-Waterman score: 659; 36.5% identity (69.1% similar) in 307 aa overlap (6-297:31-336)
10 20 30
pF1KB9 MTGSNEFKLNQPPEDGISSVKFSPNT--SQFLLVS
...... :.:.:. ..::: : ..::...
XP_011 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
10 20 30 40 50 60
40 50 60 70 80
pF1KB9 SWDTSVRLYDVPANSMRL-KYQ--HTGAVLD-CAFYDPTHAWSGGLDHQLKMHDLNTDQE
:: ..:: ..: ... . : : ::: ::: : : ....... :. :: ::...:
XP_011 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
70 80 90 100 110 120
90 100 110 120 130 140
pF1KB9 NLVGTHDAPIRCVEY--CPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEKVYTLSVSG
.. ::::.. ... :. . ..:::::.:.:.:: :. ... ::. : .:
XP_011 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
130 140 150 160 170 180
150 160 170 180 190 200
pF1KB9 DRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQ----GYVLSSIEGRV
.:.:: : ..:..:.:. .: :: ::.: ::. : .:: :..:.::::::
XP_011 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
190 200 210 220 230 240
210 220 230 240 250 260
pF1KB9 AVEYLDPSPEVQKKKYAFKCHRLKENNI---EQIYPVNAISFHNIHNTFATGGSDGFVNI
:..:..: :. : ...::::: . .: ..:: ::.:.:: .:.:.:: :::: ..
XP_011 AIHYINP-PNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF
250 260 270 280 290
270 280 290 300 310 320
pF1KB9 WDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMDDTEHPEDGIFIRQVTDAE
:: . .: .. :.. :...:. .: ::::
XP_011 WDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKACCCFCVSLFEGLLCEP
300 310 320 330 340 350
pF1KB9 TKPK
>>XP_016883597 (OMIM: 603343) PREDICTED: mRNA export fac (357 aa)
initn: 594 init1: 211 opt: 659 Z-score: 567.8 bits: 113.5 E(85289): 6.9e-25
Smith-Waterman score: 659; 36.5% identity (69.1% similar) in 307 aa overlap (6-297:31-336)
10 20 30
pF1KB9 MTGSNEFKLNQPPEDGISSVKFSPNT--SQFLLVS
...... :.:.:. ..::: : ..::...
XP_016 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
10 20 30 40 50 60
40 50 60 70 80
pF1KB9 SWDTSVRLYDVPANSMRL-KYQ--HTGAVLD-CAFYDPTHAWSGGLDHQLKMHDLNTDQE
:: ..:: ..: ... . : : ::: ::: : : ....... :. :: ::...:
XP_016 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
70 80 90 100 110 120
90 100 110 120 130 140
pF1KB9 NLVGTHDAPIRCVEY--CPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEKVYTLSVSG
.. ::::.. ... :. . ..:::::.:.:.:: :. ... ::. : .:
XP_016 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
130 140 150 160 170 180
150 160 170 180 190 200
pF1KB9 DRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQ----GYVLSSIEGRV
.:.:: : ..:..:.:. .: :: ::.: ::. : .:: :..:.::::::
XP_016 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
190 200 210 220 230 240
210 220 230 240 250 260
pF1KB9 AVEYLDPSPEVQKKKYAFKCHRLKENNI---EQIYPVNAISFHNIHNTFATGGSDGFVNI
:..:..: :. : ...::::: . .: ..:: ::.:.:: .:.:.:: :::: ..
XP_016 AIHYINP-PNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF
250 260 270 280 290
270 280 290 300 310 320
pF1KB9 WDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMDDTEHPEDGIFIRQVTDAE
:: . .: .. :.. :...:. .: ::::
XP_016 WDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKACCCFCVSLFEGLLCEP
300 310 320 330 340 350
pF1KB9 TKPK
324 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 17:01:53 2016 done: Fri Nov 4 17:01:54 2016
Total Scan time: 7.340 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]