FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9385, 324 aa
  1>>>pF1KB9385 324 - 324 aa - 324 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6650+/-0.00102; mu= 8.4715+/- 0.060
 mean_var=108.6810+/-23.993, 0's: 0 Z-trim(105.9): 88  B-trim: 154 in 1/50
 Lambda= 0.123026
 statistics sampled from 8573 (8666) to 8573 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.639), E-opt: 0.2 (0.266), width:  16
 Scan time:  2.360

The best scores are:                                      opt bits E(32554)
CCDS31306.1 BUB3 gene_id:9184|Hs108|chr10          ( 326) 2227 406.3 1.6e-113
CCDS7635.1 BUB3 gene_id:9184|Hs108|chr10           ( 328) 2227 406.4 1.6e-113
CCDS13458.1 RAE1 gene_id:8480|Hs108|chr20          ( 368)  663 128.8 6.6e-30


>>CCDS31306.1 BUB3 gene_id:9184|Hs108|chr10               (326 aa)
 initn: 2227 init1: 2227 opt: 2227  Z-score: 2151.4  bits: 406.3 E(32554): 1.6e-113
Smith-Waterman score: 2227; 100.0% identity (100.0% similar) in 324 aa overlap (1-324:1-324)

               10        20        30        40        50        60
pF1KB9 MTGSNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MTGSNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 DCAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DCAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 KLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 QTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 SFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYE
              250       260       270       280       290       300

              310       320      
pF1KB9 MDDTEHPEDGIFIRQVTDAETKPK  
       ::::::::::::::::::::::::  
CCDS31 MDDTEHPEDGIFIRQVTDAETKPKST
              310       320      

>>CCDS7635.1 BUB3 gene_id:9184|Hs108|chr10                (328 aa)
 initn: 2227 init1: 2227 opt: 2227  Z-score: 2151.4  bits: 406.4 E(32554): 1.6e-113
Smith-Waterman score: 2227; 100.0% identity (100.0% similar) in 324 aa overlap (1-324:1-324)

               10        20        30        40        50        60
pF1KB9 MTGSNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MTGSNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 DCAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 DCAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 KLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 KLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 QTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 QTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 SFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 SFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYE
              250       260       270       280       290       300

              310       320        
pF1KB9 MDDTEHPEDGIFIRQVTDAETKPK    
       ::::::::::::::::::::::::    
CCDS76 MDDTEHPEDGIFIRQVTDAETKPKSPCT
              310       320        

>>CCDS13458.1 RAE1 gene_id:8480|Hs108|chr20               (368 aa)
 initn: 594 init1: 211 opt: 663  Z-score: 650.4  bits: 128.8 E(32554): 6.6e-30
Smith-Waterman score: 674; 35.3% identity (68.5% similar) in 337 aa overlap (6-324:31-365)

                                        10        20          30   
pF1KB9                          MTGSNEFKLNQPPEDGISSVKFSPNT--SQFLLVS
                                     ...... :.:.:. ..::: :  ..::...
CCDS13 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG
               10        20        30        40        50        60

            40        50           60         70        80         
pF1KB9 SWDTSVRLYDVPANSMRL-KYQ--HTGAVLD-CAFYDPTHAWSGGLDHQLKMHDLNTDQE
       :: ..:: ..:  ... . : :  ::: ::: :   : ....... :.  :: ::...: 
CCDS13 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA
               70        80        90       100       110       120

      90       100         110       120       130       140       
pF1KB9 NLVGTHDAPIRCVEY--CPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEKVYTLSVSG
         .. ::::.. ...   :. . ..:::::.:.:.:: :.     ... ::. :  .:  
CCDS13 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY
              130       140       150       160       170       180

       150       160       170       180       190           200   
pF1KB9 DRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQ----GYVLSSIEGRV
          .:.:: : ..:..:.:.    .: :: ::.: ::.  : .::    :..:.::::::
CCDS13 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
              190       200       210       220       230       240

           210       220       230          240       250       260
pF1KB9 AVEYLDPSPEVQKKKYAFKCHRLKENNI---EQIYPVNAISFHNIHNTFATGGSDGFVNI
       :..:..: :.  : ...::::: . .:    ..:: ::.:.:: .:.:.:: ::::  ..
CCDS13 AIHYINP-PNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF
               250       260       270       280       290         

              270       280       290        300         310       
pF1KB9 WDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMY-EMDDTEHPE--DGIFIRQVT
       ::   . .:   ..    :..  :...:. .: :::: . .  .  .:.  . ::.:...
CCDS13 WDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAA
     300       310       320       330       340       350         

       320       
pF1KB9 DAETKPK   
       . : ::.   
CCDS13 E-ELKPRNKK
     360         




324 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:01:52 2016 done: Fri Nov  4 17:01:53 2016
 Total Scan time:  2.360 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]