Result of FASTA (ccds) for
pF1KB9376
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9376, 411 aa
1>>>pF1KB9376 411 - 411 aa - 411 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1621+/-0.00105; mu= 12.2953+/- 0.063
mean_var=69.4505+/-13.633, 0's: 0 Z-trim(103.7): 19 B-trim: 0 in 0/51
Lambda= 0.153899
statistics sampled from 7527 (7537) to 7527 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.596), E-opt: 0.2 (0.232), width: 16
Scan time: 2.520
The best scores are: opt bits E(32554)
CCDS48159.1 LAMP2 gene_id:3920|Hs108|chrX ( 411) 2689 606.4 1.6e-173
CCDS14600.1 LAMP2 gene_id:3920|Hs108|chrX ( 410) 2564 578.6 3.6e-165
CCDS14599.1 LAMP2 gene_id:3920|Hs108|chrX ( 410) 2547 574.9 4.9e-164
CCDS41909.1 LAMP1 gene_id:3916|Hs108|chr13 ( 417) 877 204.1 2.1e-52
CCDS3242.1 LAMP3 gene_id:27074|Hs108|chr3 ( 416) 361 89.5 6.4e-18
>>CCDS48159.1 LAMP2 gene_id:3920|Hs108|chrX (411 aa)
initn: 2689 init1: 2689 opt: 2689 Z-score: 3228.8 bits: 606.4 E(32554): 1.6e-173
Smith-Waterman score: 2689; 100.0% identity (100.0% similar) in 411 aa overlap (1-411:1-411)
10 20 30 40 50 60
pF1KB9 MVCFRLFPVPGSGLVLVCLVLGAVRSYALELNLTDSENATCLYAKWQMNFTVRYETTNKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MVCFRLFPVPGSGLVLVCLVLGAVRSYALELNLTDSENATCLYAKWQMNFTVRYETTNKT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 YKTVTISDHGTVTYNGSICGDDQNGPKIAVQFGPGFSWIANFTKAASTYSIDSVSFSYNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 YKTVTISDHGTVTYNGSICGDDQNGPKIAVQFGPGFSWIANFTKAASTYSIDSVSFSYNT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 GDNTTFPDAEDKGILTVDELLAIRIPLNDLFRCNSLSTLEKNDVVQHYWDVLVQAFVQNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 GDNTTFPDAEDKGILTVDELLAIRIPLNDLFRCNSLSTLEKNDVVQHYWDVLVQAFVQNG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 TVSTNEFLCDKDKTSTVAPTIHTTVPSPTTTPTPKEKPEAGTYSVNNGNDTCLLATMGLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 TVSTNEFLCDKDKTSTVAPTIHTTVPSPTTTPTPKEKPEAGTYSVNNGNDTCLLATMGLQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 LNITQDKVASVININPNTTHSTGSCRSHTALLRLNSSTIKYLDFVFAVKNENRFYLKEVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 LNITQDKVASVININPNTTHSTGSCRSHTALLRLNSSTIKYLDFVFAVKNENRFYLKEVN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 ISMYLVNGSVFSIANNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFDLRVQPFNVTQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 ISMYLVNGSVFSIANNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFDLRVQPFNVTQG
310 320 330 340 350 360
370 380 390 400 410
pF1KB9 KYSTAEECSADSDLNFLIPVAVGVALGFLIIVVFISYMIGRRKSRTGYQSV
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 KYSTAEECSADSDLNFLIPVAVGVALGFLIIVVFISYMIGRRKSRTGYQSV
370 380 390 400 410
>>CCDS14600.1 LAMP2 gene_id:3920|Hs108|chrX (410 aa)
initn: 2585 init1: 2438 opt: 2564 Z-score: 3078.8 bits: 578.6 E(32554): 3.6e-165
Smith-Waterman score: 2564; 95.1% identity (98.5% similar) in 411 aa overlap (1-411:1-410)
10 20 30 40 50 60
pF1KB9 MVCFRLFPVPGSGLVLVCLVLGAVRSYALELNLTDSENATCLYAKWQMNFTVRYETTNKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MVCFRLFPVPGSGLVLVCLVLGAVRSYALELNLTDSENATCLYAKWQMNFTVRYETTNKT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 YKTVTISDHGTVTYNGSICGDDQNGPKIAVQFGPGFSWIANFTKAASTYSIDSVSFSYNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 YKTVTISDHGTVTYNGSICGDDQNGPKIAVQFGPGFSWIANFTKAASTYSIDSVSFSYNT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 GDNTTFPDAEDKGILTVDELLAIRIPLNDLFRCNSLSTLEKNDVVQHYWDVLVQAFVQNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GDNTTFPDAEDKGILTVDELLAIRIPLNDLFRCNSLSTLEKNDVVQHYWDVLVQAFVQNG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 TVSTNEFLCDKDKTSTVAPTIHTTVPSPTTTPTPKEKPEAGTYSVNNGNDTCLLATMGLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 TVSTNEFLCDKDKTSTVAPTIHTTVPSPTTTPTPKEKPEAGTYSVNNGNDTCLLATMGLQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 LNITQDKVASVININPNTTHSTGSCRSHTALLRLNSSTIKYLDFVFAVKNENRFYLKEVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LNITQDKVASVININPNTTHSTGSCRSHTALLRLNSSTIKYLDFVFAVKNENRFYLKEVN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 ISMYLVNGSVFSIANNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFDLRVQPFNVTQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ISMYLVNGSVFSIANNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFDLRVQPFNVTQG
310 320 330 340 350 360
370 380 390 400 410
pF1KB9 KYSTAEECSADSDLNFLIPVAVGVALGFLIIVVFISYMIGRRKSRTGYQSV
:::::.::: :.: ..:::. ::..:. ::::. :.:.:::::: .:::..
CCDS14 KYSTAQECSLDDD-TILIPIIVGAGLSGLIIVIVIAYVIGRRKSYAGYQTL
370 380 390 400 410
>>CCDS14599.1 LAMP2 gene_id:3920|Hs108|chrX (410 aa)
initn: 2545 init1: 2441 opt: 2547 Z-score: 3058.4 bits: 574.9 E(32554): 4.9e-164
Smith-Waterman score: 2547; 94.4% identity (99.0% similar) in 409 aa overlap (1-409:1-408)
10 20 30 40 50 60
pF1KB9 MVCFRLFPVPGSGLVLVCLVLGAVRSYALELNLTDSENATCLYAKWQMNFTVRYETTNKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MVCFRLFPVPGSGLVLVCLVLGAVRSYALELNLTDSENATCLYAKWQMNFTVRYETTNKT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 YKTVTISDHGTVTYNGSICGDDQNGPKIAVQFGPGFSWIANFTKAASTYSIDSVSFSYNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 YKTVTISDHGTVTYNGSICGDDQNGPKIAVQFGPGFSWIANFTKAASTYSIDSVSFSYNT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 GDNTTFPDAEDKGILTVDELLAIRIPLNDLFRCNSLSTLEKNDVVQHYWDVLVQAFVQNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GDNTTFPDAEDKGILTVDELLAIRIPLNDLFRCNSLSTLEKNDVVQHYWDVLVQAFVQNG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 TVSTNEFLCDKDKTSTVAPTIHTTVPSPTTTPTPKEKPEAGTYSVNNGNDTCLLATMGLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 TVSTNEFLCDKDKTSTVAPTIHTTVPSPTTTPTPKEKPEAGTYSVNNGNDTCLLATMGLQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 LNITQDKVASVININPNTTHSTGSCRSHTALLRLNSSTIKYLDFVFAVKNENRFYLKEVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LNITQDKVASVININPNTTHSTGSCRSHTALLRLNSSTIKYLDFVFAVKNENRFYLKEVN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 ISMYLVNGSVFSIANNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFDLRVQPFNVTQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ISMYLVNGSVFSIANNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFDLRVQPFNVTQG
310 320 330 340 350 360
370 380 390 400 410
pF1KB9 KYSTAEECSADSDLNFLIPVAVGVALGFLIIVVFISYMIGRRKSRTGYQSV
:::::..::::.: :::.:.:::.::. ..:.:...:.:: .. ..::.
CCDS14 KYSTAQDCSADDD-NFLVPIAVGAALAGVLILVLLAYFIGLKHHHAGYEQF
370 380 390 400 410
>>CCDS41909.1 LAMP1 gene_id:3916|Hs108|chr13 (417 aa)
initn: 776 init1: 289 opt: 877 Z-score: 1054.4 bits: 204.1 E(32554): 2.1e-52
Smith-Waterman score: 877; 36.0% identity (68.3% similar) in 419 aa overlap (10-411:4-417)
10 20 30 40 50
pF1KB9 MVCFRLFPVPGSG-----LVLVCLVLGAVRSYALELNLTDSENAT-CLYAKWQMNFTVRY
:::. :.:. :.:: .. . . .. . :.: :..:... :.: :
CCDS41 MAAPGSARRPLLLLLLLLLLGLMHCASAAMFMVKNGNGTACIMANFSAAFSVNY
10 20 30 40 50
60 70 80 90 100 110
pF1KB9 ET-TNKTYKTVTISDHGTVTYNGSICG-DDQNGPKIAVQFGPGFSWIANFTKAASTYSID
.: .. : . . .::. : : :: .. . :.... :: : . :::. :. ::..
CCDS41 DTKSGPKNMTFDLPSDATVVLNRSSCGKENTSDPSLVIAFGRGHTLTLNFTRNATRYSVQ
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB9 SVSFSYNTGDNTTFPDAEDKGILTVDELLAIRIPLNDLFRCNSLSTLEKNDVVQHYWDVL
.:: :: .:. ::.: .: : ::. . :: .. .:: : . .. :.:. :.
CCDS41 LMSFVYNLSDTHLFPNASSKEIKTVESITDIRADIDKKYRCVSGTQVHMNNVTVTLHDAT
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB9 VQAFVQNGTVSTNEFLCDKDKTS-TVAPTIHTTVPSPTTTPTPKEKPEAGTYSVNNGNDT
.::...:.. : .: :..:. : :.:: . :::. .:.:: .: . :.:.. : :
CCDS41 IQAYLSNSSFSRGETRCEQDRPSPTTAPP---APPSPSPSPVPK-SPSVDKYNVSGTNGT
180 190 200 210 220 230
240 250 260 270 280
pF1KB9 CLLATMGLQLNITQDK-----VASVININPNTTHSTGSCRSHTALLRLNSSTIKYLDFVF
::::.::::::.: .. :. ..::::: : ..::: .: . :.:.: : : :
CCDS41 CLLASMGLQLNLTYERKDNTTVTRLLNINPNKTSASGSCGAHLVTLELHSEGTTVLLFQF
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB9 AVK-NENRFYLKEVNISMYLVNGS--VFSIANNNLSYWDAPLGSSYMCNKEQTVSVSGAF
... . .::.:. .... : .. .:. ::..: .: .:.:: :: :. : :. ::
CCDS41 GMNASSSRFFLQGIQLNTILPDARDPAFKAANGSLRALQATVGNSYKCNAEEHVRVTKAF
300 310 320 330 340 350
350 360 370 380 390 400
pF1KB9 QINTFDLRVQPFNVTQGKYSTAEECSADSDLNFLIPVAVGVALGFLIIVVFISYMIGRRK
..: : . :: :.: :.....::: : . ..:::.::: ::. :...:.:.:..::..
CCDS41 SVNIFKVWVQAFKVEGGQFGSVEECLLDEN-SMLIPIAVGGALAGLVLIVLIAYLVGRKR
360 370 380 390 400
410
pF1KB9 SRTGYQSV
:..:::..
CCDS41 SHAGYQTI
410
>>CCDS3242.1 LAMP3 gene_id:27074|Hs108|chr3 (416 aa)
initn: 199 init1: 76 opt: 361 Z-score: 435.2 bits: 89.5 E(32554): 6.4e-18
Smith-Waterman score: 374; 28.0% identity (60.4% similar) in 379 aa overlap (46-411:75-416)
20 30 40 50 60 70
pF1KB9 LVCLVLGAVRSYALELNLTDSENATCLYAKWQMNFTVRYETTNK--TYKTVTISD--HGT
.: ::. ::. : .:.: : .
CCDS32 VQDIKKPVQQPAKQAPHQTLAARFMDGHITFQTAATVKIPTTTPATTKNTATTSPITYTL
50 60 70 80 90 100
80 90 100 110 120
pF1KB9 VTYNGSICGDDQNGPKIAVQFGPG---FSWIANFTKAASTYSIDSVSFSYNTGDNTTFPD
:: ... .. : : ::. .: ..: : : . .: . :..:: ::: :.
CCDS32 VTTQATPNNSHTAPPVTEVTVGPSLAPYSLPPTITPPAHTTGTSSSTVSHTTG-NTTQPS
110 120 130 140 150 160
130 140 150 160 170 180
pF1KB9 AEDKGILTVDELLAIRIPLNDLFRCNSLSTLEKNDVVQHYWDVLVQAFVQNGTVSTNEFL
. :. :.: .:.:. . :. :: ::... .
CCDS32 NQT----TLPATLSI--------------ALHKSTTGQKP----VQPTHAPGTTAAAH--
170 180 190
190 200 210 220 230 240
pF1KB9 CDKDKTSTVAPTIHTTVPSPTTTPTPKEKPEAGTYSVNNGNDTCLLATMGLQLNITQDK-
. : :.::. .:::.:: .: :. . ..: :.: ::. :. : ::.:: :.:::
CCDS32 ---NTTRTAAPA--STVPGPTLAPQPS-SVKTGIYQVLNGSRLCIKAEMGIQL-IVQDKE
200 210 220 230 240 250
250 260 270 280 290 300
pF1KB9 -VAS---VININPNTTHSTGSCRSHTALLRLNSSTIKYLDFVFAVKNENRFYLKEVNISM
: : .::.::.:...:.: .. . : :: . .....:. :.:. .:..::. .
CCDS32 SVFSPRRYFNIDPNATQASGNCGTRKSNLLLNFQG-GFVNLTFT-KDEESYYISEVGAYL
260 270 280 290 300 310
310 320 330 340 350 360
pF1KB9 YLVNG-SVFSIANNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINTFDLRVQPFNVTQGKY
. . .... .. . .... .: :. : .::....:. .:..: :...: :. . ..
CCDS32 TVSDPETIYQGIKHAVVMFQTAVGHSFKCVSEQSLQLSAHLQVKTTDVQLQAFDFEDDHF
320 330 340 350 360 370
370 380 390 400 410
pF1KB9 STAEECSADSDLNFLIPVAVGVALGFLIIVVFISYMIGRRKSRTGYQSV
....::: :: ....:: ....:. .. . . : : : . .::: .
CCDS32 GNVDECS--SDYTIVLPVIGAIVVGLCLMGMGV-YKIRLRCQSSGYQRI
380 390 400 410
411 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 13:17:44 2016 done: Sat Nov 5 13:17:44 2016
Total Scan time: 2.520 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]