Result of FASTA (omim) for
pF1KB9295
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9295, 203 aa
1>>>pF1KB9295 203 - 203 aa - 203 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.7368+/-0.000345; mu= 2.7257+/- 0.022
mean_var=164.1464+/-32.584, 0's: 0 Z-trim(121.0): 32 B-trim: 1229 in 1/54
Lambda= 0.100106
statistics sampled from 36856 (36891) to 36856 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.433), width: 16
Scan time: 5.990
The best scores are: opt bits E(85289)
NP_057157 (OMIM: 616643) hepatoma-derived growth f ( 203) 1376 209.8 2.5e-54
XP_006720617 (OMIM: 616643) PREDICTED: hepatoma-de ( 212) 1371 209.1 4.3e-54
NP_004485 (OMIM: 600339) hepatoma-derived growth f ( 240) 624 101.2 1.4e-21
NP_001304827 (OMIM: 603620) PC4 and SFRS1-interact ( 329) 613 99.7 5.4e-21
NP_066967 (OMIM: 603620) PC4 and SFRS1-interacting ( 333) 613 99.7 5.5e-21
NP_001304829 (OMIM: 603620) PC4 and SFRS1-interact ( 324) 612 99.6 5.9e-21
NP_150091 (OMIM: 603620) PC4 and SFRS1-interacting ( 530) 613 99.9 7.8e-21
NP_001121689 (OMIM: 603620) PC4 and SFRS1-interact ( 530) 613 99.9 7.8e-21
NP_001119522 (OMIM: 600339) hepatoma-derived growt ( 256) 470 79.0 7.4e-15
NP_001119523 (OMIM: 600339) hepatoma-derived growt ( 233) 465 78.2 1.1e-14
NP_001306115 (OMIM: 600339) hepatoma-derived growt ( 263) 453 76.5 4.1e-14
XP_011507755 (OMIM: 600339) PREDICTED: hepatoma-de ( 208) 444 75.2 8.5e-14
XP_011507756 (OMIM: 600339) PREDICTED: hepatoma-de ( 208) 444 75.2 8.5e-14
XP_011507757 (OMIM: 600339) PREDICTED: hepatoma-de ( 208) 444 75.2 8.5e-14
NP_001306117 (OMIM: 600339) hepatoma-derived growt ( 208) 444 75.2 8.5e-14
NP_001306116 (OMIM: 600339) hepatoma-derived growt ( 208) 444 75.2 8.5e-14
NP_001295025 (OMIM: 610660) putative oxidoreductas ( 547) 228 44.3 0.00044
XP_016879276 (OMIM: 610660) PREDICTED: putative ox ( 552) 228 44.3 0.00044
NP_115958 (OMIM: 610660) putative oxidoreductase G ( 553) 228 44.3 0.00044
NP_001311027 (OMIM: 610660) putative oxidoreductas ( 558) 228 44.3 0.00045
XP_016879275 (OMIM: 610660) PREDICTED: putative ox ( 574) 228 44.3 0.00046
XP_011521018 (OMIM: 610660) PREDICTED: putative ox ( 548) 199 40.1 0.008
>>NP_057157 (OMIM: 616643) hepatoma-derived growth facto (203 aa)
initn: 1376 init1: 1376 opt: 1376 Z-score: 1096.3 bits: 209.8 E(85289): 2.5e-54
Smith-Waterman score: 1376; 100.0% identity (100.0% similar) in 203 aa overlap (1-203:1-203)
10 20 30 40 50 60
pF1KB9 MARPRPREYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MARPRPREYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 DLFPYKEYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSETEGEGGNTADA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 DLFPYKEYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSETEGEGGNTADA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 SSEEEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEENKSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 SSEEEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEENKSSS
130 140 150 160 170 180
190 200
pF1KB9 EGGDAGNDTRNTTSDLQKTSEGT
:::::::::::::::::::::::
NP_057 EGGDAGNDTRNTTSDLQKTSEGT
190 200
>>XP_006720617 (OMIM: 616643) PREDICTED: hepatoma-derive (212 aa)
initn: 1371 init1: 1371 opt: 1371 Z-score: 1092.2 bits: 209.1 E(85289): 4.3e-54
Smith-Waterman score: 1371; 100.0% identity (100.0% similar) in 202 aa overlap (1-202:1-202)
10 20 30 40 50 60
pF1KB9 MARPRPREYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MARPRPREYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 DLFPYKEYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSETEGEGGNTADA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DLFPYKEYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSETEGEGGNTADA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 SSEEEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEENKSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SSEEEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEENKSSS
130 140 150 160 170 180
190 200
pF1KB9 EGGDAGNDTRNTTSDLQKTSEGT
::::::::::::::::::::::
XP_006 EGGDAGNDTRNTTSDLQKTSEGKMLWTIIEID
190 200 210
>>NP_004485 (OMIM: 600339) hepatoma-derived growth facto (240 aa)
initn: 636 init1: 576 opt: 624 Z-score: 508.4 bits: 101.2 E(85289): 1.4e-21
Smith-Waterman score: 661; 51.5% identity (69.6% similar) in 227 aa overlap (1-203:1-225)
10 20 30 40 50
pF1KB9 MARP-RPREYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGP
:.: : .::: ::::::::::::::::::::.::.::: :::: .:::::::::::::
NP_004 MSRSNRQKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 KDLFPYKEYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSE--------TE
::::::.: :.:::: ::::::.:::::::::: :: .:::. :..: : .:
NP_004 KDLFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAE
70 80 90 100 110 120
120 130 140 150 160
pF1KB9 GEG---GNTADASSEEEGDRVEEDGKGKRKNEKAGSKRKKS---YTSKKSSKQSRKSPGD
:.: :: :..::.::: : : .:.::::.. ::. . : : :.... :.
NP_004 GDGDKKGN-AEGSSDEEGKLVI-DEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGE
130 140 150 160 170
170 180 190 200
pF1KB9 EDDKDCKE---------EENKSSSEGGDAGNDTRNTTSDLQKTSEGT
: . : :.:.. :: :.. . .. . .. :.:
NP_004 EKEAATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIRDHE
180 190 200 210 220 230
NP_004 SL
240
>>NP_001304827 (OMIM: 603620) PC4 and SFRS1-interacting (329 aa)
initn: 604 init1: 572 opt: 613 Z-score: 497.9 bits: 99.7 E(85289): 5.4e-21
Smith-Waterman score: 613; 55.6% identity (78.8% similar) in 160 aa overlap (7-166:3-155)
10 20 30 40 50 60
pF1KB9 MARPRPREYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPK
:..: :::.:::::::::::::.::.:.::::::.:: ::::::::::::::::
NP_001 MTRDFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPK
10 20 30 40 50
70 80 90 100 110 120
pF1KB9 DLFPYKEYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSETEGEGGNTADA
:.:::.: :.:.:: :::::::::::::.::: :::.. :: .::.. .. : . .
NP_001 DIFPYSENKEKYGKPNKRKGFNEGLWEIDNNPKVKFSSQQAATKQSNASSDVEVEEKETS
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB9 SSEEEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEENKSSS
:.:. :. : : .:: . . . :. :.....:: ...
NP_001 VSKEDTDHEE-----KASNEDV--TKAVDITTPKAARRGRKRKAEKQVETEEAGVVTTAT
120 130 140 150 160
190 200
pF1KB9 EGGDAGNDTRNTTSDLQKTSEGT
NP_001 ASVNLKVSPKRGRPAATEVKIPKPRGRPKMVKQPCPSESDIITEEDKSKKKGQEEKQPKK
170 180 190 200 210 220
>>NP_066967 (OMIM: 603620) PC4 and SFRS1-interacting pro (333 aa)
initn: 604 init1: 572 opt: 613 Z-score: 497.8 bits: 99.7 E(85289): 5.5e-21
Smith-Waterman score: 613; 55.6% identity (78.8% similar) in 160 aa overlap (7-166:3-155)
10 20 30 40 50 60
pF1KB9 MARPRPREYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPK
:..: :::.:::::::::::::.::.:.::::::.:: ::::::::::::::::
NP_066 MTRDFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPK
10 20 30 40 50
70 80 90 100 110 120
pF1KB9 DLFPYKEYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSETEGEGGNTADA
:.:::.: :.:.:: :::::::::::::.::: :::.. :: .::.. .. : . .
NP_066 DIFPYSENKEKYGKPNKRKGFNEGLWEIDNNPKVKFSSQQAATKQSNASSDVEVEEKETS
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB9 SSEEEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEENKSSS
:.:. :. : : .:: . . . :. :.....:: ...
NP_066 VSKEDTDHEE-----KASNEDV--TKAVDITTPKAARRGRKRKAEKQVETEEAGVVTTAT
120 130 140 150 160
190 200
pF1KB9 EGGDAGNDTRNTTSDLQKTSEGT
NP_066 ASVNLKVSPKRGRPAATEVKIPKPRGRPKMVKQPCPSESDIITEEDKSKKKGQEEKQPKK
170 180 190 200 210 220
>>NP_001304829 (OMIM: 603620) PC4 and SFRS1-interacting (324 aa)
initn: 604 init1: 572 opt: 612 Z-score: 497.2 bits: 99.6 E(85289): 5.9e-21
Smith-Waterman score: 612; 57.4% identity (79.4% similar) in 155 aa overlap (7-161:3-150)
10 20 30 40 50 60
pF1KB9 MARPRPREYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPK
:..: :::.:::::::::::::.::.:.::::::.:: ::::::::::::::::
NP_001 MTRDFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPK
10 20 30 40 50
70 80 90 100 110 120
pF1KB9 DLFPYKEYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSETEGEGGNTADA
:.:::.: :.:.:: :::::::::::::.::: :::.. :: .::.. .. : . .
NP_001 DIFPYSENKEKYGKPNKRKGFNEGLWEIDNNPKVKFSSQQAATKQSNASSDVEVEEKETS
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB9 SSEEEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEENKSSS
:.:. :. : : .:: . . . :. :.....::
NP_001 VSKEDTDHEE-----KASNEDV--TKAVDITTPKAARRGRKRKAGVVTTATASVNLKVSP
120 130 140 150 160
190 200
pF1KB9 EGGDAGNDTRNTTSDLQKTSEGT
NP_001 KRGRPAATEVKIPKPRGRPKMVKQPCPSESDIITEEDKSKKKGQEEKQPKKQPKKDEEGQ
170 180 190 200 210 220
>>NP_150091 (OMIM: 603620) PC4 and SFRS1-interacting pro (530 aa)
initn: 626 init1: 572 opt: 613 Z-score: 495.0 bits: 99.9 E(85289): 7.8e-21
Smith-Waterman score: 613; 55.6% identity (78.8% similar) in 160 aa overlap (7-166:3-155)
10 20 30 40 50 60
pF1KB9 MARPRPREYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPK
:..: :::.:::::::::::::.::.:.::::::.:: ::::::::::::::::
NP_150 MTRDFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPK
10 20 30 40 50
70 80 90 100 110 120
pF1KB9 DLFPYKEYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSETEGEGGNTADA
:.:::.: :.:.:: :::::::::::::.::: :::.. :: .::.. .. : . .
NP_150 DIFPYSENKEKYGKPNKRKGFNEGLWEIDNNPKVKFSSQQAATKQSNASSDVEVEEKETS
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB9 SSEEEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEENKSSS
:.:. :. : : .:: . . . :. :.....:: ...
NP_150 VSKEDTDHEE-----KASNEDV--TKAVDITTPKAARRGRKRKAEKQVETEEAGVVTTAT
120 130 140 150 160
190 200
pF1KB9 EGGDAGNDTRNTTSDLQKTSEGT
NP_150 ASVNLKVSPKRGRPAATEVKIPKPRGRPKMVKQPCPSESDIITEEDKSKKKGQEEKQPKK
170 180 190 200 210 220
>>NP_001121689 (OMIM: 603620) PC4 and SFRS1-interacting (530 aa)
initn: 626 init1: 572 opt: 613 Z-score: 495.0 bits: 99.9 E(85289): 7.8e-21
Smith-Waterman score: 613; 55.6% identity (78.8% similar) in 160 aa overlap (7-166:3-155)
10 20 30 40 50 60
pF1KB9 MARPRPREYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPK
:..: :::.:::::::::::::.::.:.::::::.:: ::::::::::::::::
NP_001 MTRDFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPK
10 20 30 40 50
70 80 90 100 110 120
pF1KB9 DLFPYKEYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSETEGEGGNTADA
:.:::.: :.:.:: :::::::::::::.::: :::.. :: .::.. .. : . .
NP_001 DIFPYSENKEKYGKPNKRKGFNEGLWEIDNNPKVKFSSQQAATKQSNASSDVEVEEKETS
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB9 SSEEEGDRVEEDGKGKRKNEKAGSKRKKSYTSKKSSKQSRKSPGDEDDKDCKEEENKSSS
:.:. :. : : .:: . . . :. :.....:: ...
NP_001 VSKEDTDHEE-----KASNEDV--TKAVDITTPKAARRGRKRKAEKQVETEEAGVVTTAT
120 130 140 150 160
190 200
pF1KB9 EGGDAGNDTRNTTSDLQKTSEGT
NP_001 ASVNLKVSPKRGRPAATEVKIPKPRGRPKMVKQPCPSESDIITEEDKSKKKGQEEKQPKK
170 180 190 200 210 220
>>NP_001119522 (OMIM: 600339) hepatoma-derived growth fa (256 aa)
initn: 486 init1: 426 opt: 470 Z-score: 387.8 bits: 79.0 E(85289): 7.4e-15
Smith-Waterman score: 507; 47.3% identity (66.7% similar) in 201 aa overlap (26-203:43-241)
10 20 30 40 50
pF1KB9 MARPRPREYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETA
: :::.::.::: :::: .:::::::::
NP_001 LGHLLATKLKRFLLSKGGRRAQIPDVSRATPHTIDEMPEAAVKSTANKYQVFFFGTHETA
20 30 40 50 60 70
60 70 80 90 100
pF1KB9 FLGPKDLFPYKEYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSE------
::::::::::.: :.:::: ::::::.:::::::::: :: .:::. :..: :
NP_001 FLGPKDLFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEP
80 90 100 110 120 130
110 120 130 140 150 160
pF1KB9 --TEGEG---GNTADASSEEEGDRVEEDGKGKRKNEKAGSKRKKS---YTSKKSSKQSRK
.::.: :: :..::.::: : : .:.::::.. ::. . : : :....
NP_001 EAAEGDGDKKGN-AEGSSDEEGKLVI-DEPAKEKNEKGALKRRAGDLLEDSPKRPKEAEN
140 150 160 170 180 190
170 180 190 200
pF1KB9 SPGDEDDKDCKE---------EENKSSSEGGDAGNDTRNTTSDLQKTSEGT
:.: . : :.:.. :: :.. . .. . .. :.:
NP_001 PEGEEKEAATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGI
200 210 220 230 240 250
NP_001 RDHESL
>>NP_001119523 (OMIM: 600339) hepatoma-derived growth fa (233 aa)
initn: 488 init1: 428 opt: 465 Z-score: 384.4 bits: 78.2 E(85289): 1.1e-14
Smith-Waterman score: 502; 47.5% identity (67.0% similar) in 200 aa overlap (27-203:21-218)
10 20 30 40 50 60
pF1KB9 MARPRPREYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPK
: :::.::.::: :::: .::::::::::::::
NP_001 MEQRAGGNRVQTSTLNCAGAAVIDEMPEAAVKSTANKYQVFFFGTHETAFLGPK
10 20 30 40 50
70 80 90 100 110
pF1KB9 DLFPYKEYKDKFGKSNKRKGFNEGLWEIENNPGVKFTGYQAIQQQSSSE--------TEG
:::::.: :.:::: ::::::.:::::::::: :: .:::. :..: : .::
NP_001 DLFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSCVEEPEPEPEAAEG
60 70 80 90 100 110
120 130 140 150 160
pF1KB9 EG---GNTADASSEEEGDRVEEDGKGKRKNEKAGSKRKKS---YTSKKSSKQSRKSPGDE
.: :: :..::.::: : : .:.::::.. ::. . : : :.... :.:
NP_001 DGDKKGN-AEGSSDEEGKLVI-DEPAKEKNEKGALKRRAGDLLEDSPKRPKEAENPEGEE
120 130 140 150 160 170
170 180 190 200
pF1KB9 DDKDCKE---------EENKSSSEGGDAGNDTRNTTSDLQKTSEGT
. : :.:.. :: :.. . .. . .. :.:
NP_001 KEAATLEVERPLPMEVEKNSTPSEPGSGRGPPQEEEEEEDEEEEATKEDAEAPGIRDHES
180 190 200 210 220 230
NP_001 L
203 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 13:17:14 2016 done: Sat Nov 5 13:17:15 2016
Total Scan time: 5.990 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]