FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9290, 297 aa
  1>>>pF1KB9290 297 - 297 aa - 297 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9005+/-0.000704; mu= 10.4769+/- 0.043
 mean_var=138.6476+/-28.058, 0's: 0 Z-trim(115.5): 3  B-trim: 784 in 2/49
 Lambda= 0.108923
 statistics sampled from 16087 (16090) to 16087 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.814), E-opt: 0.2 (0.494), width:  16
 Scan time:  2.990

The best scores are:                                      opt bits E(32554)
CCDS841.1 FAM212B gene_id:55924|Hs108|chr1         ( 297) 2095 339.7 1.6e-93
CCDS44195.1 FAM212B gene_id:55924|Hs108|chr1       ( 282) 1976 321.0 6.6e-88


>>CCDS841.1 FAM212B gene_id:55924|Hs108|chr1              (297 aa)
 initn: 2095 init1: 2095 opt: 2095  Z-score: 1792.4  bits: 339.7 E(32554): 1.6e-93
Smith-Waterman score: 2095; 100.0% identity (100.0% similar) in 297 aa overlap (1-297:1-297)

               10        20        30        40        50        60
pF1KB9 MTMESREMDCYLRRLKQELMSMKEVGDGLQDQMNCMMGALQELKLLQVQTALEQLEISGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 MTMESREMDCYLRRLKQELMSMKEVGDGLQDQMNCMMGALQELKLLQVQTALEQLEISGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 GPVPGSPEGPRTQCEHPCWEGGRGPARPTVCSPSSQPSLGSSTKFPSHRSVCGRDLAPLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 GPVPGSPEGPRTQCEHPCWEGGRGPARPTVCSPSSQPSLGSSTKFPSHRSVCGRDLAPLP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 RTQPHQSCAQQGPERVEPDDWTSTLMSRGRNRQPLVLGDNVFADLVGNWLDLPELEKGGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 RTQPHQSCAQQGPERVEPDDWTSTLMSRGRNRQPLVLGDNVFADLVGNWLDLPELEKGGE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 KGETGGAREPKGEKGQPQELGRRFALTANIFKKFLRSVRPDRDRLLKEKPGWVTPMVPES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 KGETGGAREPKGEKGQPQELGRRFALTANIFKKFLRSVRPDRDRLLKEKPGWVTPMVPES
              190       200       210       220       230       240

              250       260       270       280       290       
pF1KB9 RTGRSQKVKKRSLSKGSGHFPFPGTGEHRRGENPPTSCPKALEHSPSGFDINTAVWV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 RTGRSQKVKKRSLSKGSGHFPFPGTGEHRRGENPPTSCPKALEHSPSGFDINTAVWV
              250       260       270       280       290       

>>CCDS44195.1 FAM212B gene_id:55924|Hs108|chr1            (282 aa)
 initn: 1976 init1: 1976 opt: 1976  Z-score: 1691.7  bits: 321.0 E(32554): 6.6e-88
Smith-Waterman score: 1976; 99.3% identity (100.0% similar) in 281 aa overlap (17-297:2-282)

               10        20        30        40        50        60
pF1KB9 MTMESREMDCYLRRLKQELMSMKEVGDGLQDQMNCMMGALQELKLLQVQTALEQLEISGG
                       ..::::::::::::::::::::::::::::::::::::::::::
CCDS44                MRQLMSMKEVGDGLQDQMNCMMGALQELKLLQVQTALEQLEISGG
                              10        20        30        40     

               70        80        90       100       110       120
pF1KB9 GPVPGSPEGPRTQCEHPCWEGGRGPARPTVCSPSSQPSLGSSTKFPSHRSVCGRDLAPLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GPVPGSPEGPRTQCEHPCWEGGRGPARPTVCSPSSQPSLGSSTKFPSHRSVCGRDLAPLP
          50        60        70        80        90       100     

              130       140       150       160       170       180
pF1KB9 RTQPHQSCAQQGPERVEPDDWTSTLMSRGRNRQPLVLGDNVFADLVGNWLDLPELEKGGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RTQPHQSCAQQGPERVEPDDWTSTLMSRGRNRQPLVLGDNVFADLVGNWLDLPELEKGGE
         110       120       130       140       150       160     

              190       200       210       220       230       240
pF1KB9 KGETGGAREPKGEKGQPQELGRRFALTANIFKKFLRSVRPDRDRLLKEKPGWVTPMVPES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KGETGGAREPKGEKGQPQELGRRFALTANIFKKFLRSVRPDRDRLLKEKPGWVTPMVPES
         170       180       190       200       210       220     

              250       260       270       280       290       
pF1KB9 RTGRSQKVKKRSLSKGSGHFPFPGTGEHRRGENPPTSCPKALEHSPSGFDINTAVWV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RTGRSQKVKKRSLSKGSGHFPFPGTGEHRRGENPPTSCPKALEHSPSGFDINTAVWV
         230       240       250       260       270       280  




297 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:16:37 2016 done: Sat Nov  5 13:16:37 2016
 Total Scan time:  2.990 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]