FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9284, 195 aa
  1>>>pF1KB9284 195 - 195 aa - 195 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.5989+/-0.000387; mu= -9.2903+/- 0.024
 mean_var=355.0660+/-74.735, 0's: 0 Z-trim(123.0): 20  B-trim: 0 in 0/58
 Lambda= 0.068064
 statistics sampled from 41987 (42010) to 41987 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.791), E-opt: 0.2 (0.493), width:  16
 Scan time:  6.320

The best scores are:                                      opt bits E(85289)
XP_016872904 (OMIM: 616316) PREDICTED: protein FAM ( 193)  923 103.1 2.9e-22
NP_055974 (OMIM: 616316) protein FAM168A isoform 2 ( 235)  731 84.3 1.6e-16
NP_001272979 (OMIM: 616316) protein FAM168A isofor ( 244)  724 83.7 2.6e-16


>>XP_016872904 (OMIM: 616316) PREDICTED: protein FAM168A  (193 aa)
 initn: 1017 init1: 510 opt: 923  Z-score: 520.7  bits: 103.1 E(85289): 2.9e-22
Smith-Waterman score: 923; 66.2% identity (85.6% similar) in 195 aa overlap (1-195:1-193)

               10        20        30        40        50        60
pF1KB9 MNPVYSPGSSGVPYANAKGIGYPAGFPMGYAAAAPAYSPNMYPGANPTFQTGYTPGTPYK
       ::::::: . :.::.: :...: .:.: .: ::::::.:..::  .:..  ::: :::::
XP_016 MNPVYSPVQPGAPYGNPKNMAY-TGYPTAYPAAAPAYNPSLYPTNSPSYAPGYTAGTPYK
               10        20         30        40        50         

               70        80        90       100       110       120
pF1KB9 VSCSPTSGAVPPYSSSPNPYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAAPPHVIHHTT
       :  . .. : :::: ::::::::.::.:::::::. ::: :.:::::.::: ::::::::
XP_016 VPPTQSNTAPPPYSPSPNPYQTAMYPIRSAYPQQNLYAQ-GAYYTQPVYAAQPHVIHHTT
      60        70        80        90        100       110        

              130       140       150       160       170       180
pF1KB9 VVQPNGMPATVYPAPIPPPRGNGVTMGMVAGTTMAMSAGTLLTAHSPTPVAPHPVTVPTY
       :::::..:...::::.  :: :::.::::::::::::::::::. . : .. :::..:::
XP_016 VVQPNSIPSAIYPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTY
      120       130       140       150       160       170        

              190     
pF1KB9 RAPGTPTYSYVPPQW
       :: :::.::::::.:
XP_016 RAQGTPAYSYVPPHW
      180       190   

>>NP_055974 (OMIM: 616316) protein FAM168A isoform 2 [Ho  (235 aa)
 initn: 955 init1: 510 opt: 731  Z-score: 417.7  bits: 84.3 E(85289): 1.6e-16
Smith-Waterman score: 779; 54.2% identity (70.9% similar) in 227 aa overlap (11-195:11-235)

               10        20        30        40                    
pF1KB9 MNPVYSPGSSGVPYANAKGIGYPAGFPMGYAAAAPAYSPNMYPGANPTF-----------
                 :.::.: :...: .:.: .: ::::::.:..::  .:..           
NP_055 MNPVYSPVQPGAPYGNPKNMAY-TGYPTAYPAAAPAYNPSLYPTNSPSYAPATLLMKQAW
               10        20         30        40        50         

                       50                      60        70        
pF1KB9 -----------------QTG--------------YTPGTPYKVSCSPTSGAVPPYSSSPN
                        .::              :: ::::::  . .. : :::: :::
NP_055 PQNSSSCGTEGTFHLPVDTGTENRTYQASSAAFRYTAGTPYKVPPTQSNTAPPPYSPSPN
      60        70        80        90       100       110         

       80        90       100       110       120       130        
pF1KB9 PYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAAPPHVIHHTTVVQPNGMPATVYPAPIPP
       :::::.::.:::::::. ::: :.:::::.::: :::::::::::::..:...::::.  
NP_055 PYQTAMYPIRSAYPQQNLYAQ-GAYYTQPVYAAQPHVIHHTTVVQPNSIPSAIYPAPVAA
     120       130       140        150       160       170        

      140       150       160       170       180       190     
pF1KB9 PRGNGVTMGMVAGTTMAMSAGTLLTAHSPTPVAPHPVTVPTYRAPGTPTYSYVPPQW
       :: :::.::::::::::::::::::. . : .. :::..::::: :::.::::::.:
NP_055 PRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTYRAQGTPAYSYVPPHW
      180       190       200       210       220       230     

>>NP_001272979 (OMIM: 616316) protein FAM168A isoform 1   (244 aa)
 initn: 955 init1: 510 opt: 724  Z-score: 413.8  bits: 83.7 E(85289): 2.6e-16
Smith-Waterman score: 730; 52.8% identity (67.7% similar) in 229 aa overlap (18-195:18-244)

               10        20        30        40            50      
pF1KB9 MNPVYSPGSSGVPYANAKGIGYPAGFPMGYAAAAPAYSPNMYPGANPT----FQ------
                        :...: .:.: .: ::::::.:..::  .:.    ::      
NP_001 MNPVYSPVQPGAPYGNPKNMAY-TGYPTAYPAAAPAYNPSLYPTNSPSYAPEFQFLHSAY
               10        20         30        40        50         

                                                        60         
pF1KB9 ---------------------------TG--------------YTPGTPYKVSCSPTSGA
                                  ::              :: ::::::  . .. :
NP_001 ATLLMKQAWPQNSSSCGTEGTFHLPVDTGTENRTYQASSAAFRYTAGTPYKVPPTQSNTA
      60        70        80        90       100       110         

      70        80        90       100       110       120         
pF1KB9 VPPYSSSPNPYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAAPPHVIHHTTVVQPNGMPA
        :::: ::::::::.::.:::::::. ::: :.:::::.::: :::::::::::::..:.
NP_001 PPPYSPSPNPYQTAMYPIRSAYPQQNLYAQ-GAYYTQPVYAAQPHVIHHTTVVQPNSIPS
     120       130       140        150       160       170        

     130       140       150       160       170       180         
pF1KB9 TVYPAPIPPPRGNGVTMGMVAGTTMAMSAGTLLTAHSPTPVAPHPVTVPTYRAPGTPTYS
       ..::::.  :: :::.::::::::::::::::::. . : .. :::..::::: :::.::
NP_001 AIYPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTYRAQGTPAYS
      180       190       200       210       220       230        

     190     
pF1KB9 YVPPQW
       ::::.:
NP_001 YVPPHW
      240    




195 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:16:01 2016 done: Sat Nov  5 13:16:02 2016
 Total Scan time:  6.320 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]