FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9284, 195 aa
  1>>>pF1KB9284 195 - 195 aa - 195 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.1256+/-0.000967; mu= -7.1581+/- 0.058
 mean_var=295.1495+/-61.714, 0's: 0 Z-trim(115.2): 17  B-trim: 152 in 1/51
 Lambda= 0.074654
 statistics sampled from 15696 (15707) to 15696 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.482), width:  16
 Scan time:  2.210

The best scores are:                                      opt bits E(32554)
CCDS42755.1 FAM168B gene_id:130074|Hs108|chr2      ( 195) 1384 161.2 3.7e-40
CCDS41689.1 FAM168A gene_id:23201|Hs108|chr11      ( 235)  731 90.9 6.4e-19
CCDS73346.1 FAM168A gene_id:23201|Hs108|chr11      ( 244)  724 90.2 1.1e-18


>>CCDS42755.1 FAM168B gene_id:130074|Hs108|chr2           (195 aa)
 initn: 1384 init1: 1384 opt: 1384  Z-score: 834.4  bits: 161.2 E(32554): 3.7e-40
Smith-Waterman score: 1384; 100.0% identity (100.0% similar) in 195 aa overlap (1-195:1-195)

               10        20        30        40        50        60
pF1KB9 MNPVYSPGSSGVPYANAKGIGYPAGFPMGYAAAAPAYSPNMYPGANPTFQTGYTPGTPYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MNPVYSPGSSGVPYANAKGIGYPAGFPMGYAAAAPAYSPNMYPGANPTFQTGYTPGTPYK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 VSCSPTSGAVPPYSSSPNPYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAAPPHVIHHTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VSCSPTSGAVPPYSSSPNPYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAAPPHVIHHTT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 VVQPNGMPATVYPAPIPPPRGNGVTMGMVAGTTMAMSAGTLLTAHSPTPVAPHPVTVPTY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VVQPNGMPATVYPAPIPPPRGNGVTMGMVAGTTMAMSAGTLLTAHSPTPVAPHPVTVPTY
              130       140       150       160       170       180

              190     
pF1KB9 RAPGTPTYSYVPPQW
       :::::::::::::::
CCDS42 RAPGTPTYSYVPPQW
              190     

>>CCDS41689.1 FAM168A gene_id:23201|Hs108|chr11           (235 aa)
 initn: 955 init1: 510 opt: 731  Z-score: 453.2  bits: 90.9 E(32554): 6.4e-19
Smith-Waterman score: 779; 54.2% identity (70.9% similar) in 227 aa overlap (11-195:11-235)

               10        20        30        40                    
pF1KB9 MNPVYSPGSSGVPYANAKGIGYPAGFPMGYAAAAPAYSPNMYPGANPTF-----------
                 :.::.: :...: .:.: .: ::::::.:..::  .:..           
CCDS41 MNPVYSPVQPGAPYGNPKNMAY-TGYPTAYPAAAPAYNPSLYPTNSPSYAPATLLMKQAW
               10        20         30        40        50         

                       50                      60        70        
pF1KB9 -----------------QTG--------------YTPGTPYKVSCSPTSGAVPPYSSSPN
                        .::              :: ::::::  . .. : :::: :::
CCDS41 PQNSSSCGTEGTFHLPVDTGTENRTYQASSAAFRYTAGTPYKVPPTQSNTAPPPYSPSPN
      60        70        80        90       100       110         

       80        90       100       110       120       130        
pF1KB9 PYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAAPPHVIHHTTVVQPNGMPATVYPAPIPP
       :::::.::.:::::::. ::: :.:::::.::: :::::::::::::..:...::::.  
CCDS41 PYQTAMYPIRSAYPQQNLYAQ-GAYYTQPVYAAQPHVIHHTTVVQPNSIPSAIYPAPVAA
     120       130       140        150       160       170        

      140       150       160       170       180       190     
pF1KB9 PRGNGVTMGMVAGTTMAMSAGTLLTAHSPTPVAPHPVTVPTYRAPGTPTYSYVPPQW
       :: :::.::::::::::::::::::. . : .. :::..::::: :::.::::::.:
CCDS41 PRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTYRAQGTPAYSYVPPHW
      180       190       200       210       220       230     

>>CCDS73346.1 FAM168A gene_id:23201|Hs108|chr11           (244 aa)
 initn: 955 init1: 510 opt: 724  Z-score: 448.9  bits: 90.2 E(32554): 1.1e-18
Smith-Waterman score: 730; 52.8% identity (67.7% similar) in 229 aa overlap (18-195:18-244)

               10        20        30        40            50      
pF1KB9 MNPVYSPGSSGVPYANAKGIGYPAGFPMGYAAAAPAYSPNMYPGANPT----FQ------
                        :...: .:.: .: ::::::.:..::  .:.    ::      
CCDS73 MNPVYSPVQPGAPYGNPKNMAY-TGYPTAYPAAAPAYNPSLYPTNSPSYAPEFQFLHSAY
               10        20         30        40        50         

                                                        60         
pF1KB9 ---------------------------TG--------------YTPGTPYKVSCSPTSGA
                                  ::              :: ::::::  . .. :
CCDS73 ATLLMKQAWPQNSSSCGTEGTFHLPVDTGTENRTYQASSAAFRYTAGTPYKVPPTQSNTA
      60        70        80        90       100       110         

      70        80        90       100       110       120         
pF1KB9 VPPYSSSPNPYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAAPPHVIHHTTVVQPNGMPA
        :::: ::::::::.::.:::::::. ::: :.:::::.::: :::::::::::::..:.
CCDS73 PPPYSPSPNPYQTAMYPIRSAYPQQNLYAQ-GAYYTQPVYAAQPHVIHHTTVVQPNSIPS
     120       130       140        150       160       170        

     130       140       150       160       170       180         
pF1KB9 TVYPAPIPPPRGNGVTMGMVAGTTMAMSAGTLLTAHSPTPVAPHPVTVPTYRAPGTPTYS
       ..::::.  :: :::.::::::::::::::::::. . : .. :::..::::: :::.::
CCDS73 AIYPAPVAAPRTNGVAMGMVAGTTMAMSAGTLLTTPQHTAIGAHPVSMPTYRAQGTPAYS
      180       190       200       210       220       230        

     190     
pF1KB9 YVPPQW
       ::::.:
CCDS73 YVPPHW
      240    




195 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:16:01 2016 done: Sat Nov  5 13:16:01 2016
 Total Scan time:  2.210 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]