Result of FASTA (omim) for
pF1KB9273
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9273, 376 aa
1>>>pF1KB9273 376 - 376 aa - 376 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2973+/-0.000367; mu= 16.2834+/- 0.023
mean_var=62.5979+/-12.387, 0's: 0 Z-trim(113.1): 23 B-trim: 299 in 1/53
Lambda= 0.162104
statistics sampled from 22255 (22273) to 22255 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.644), E-opt: 0.2 (0.261), width: 16
Scan time: 7.650
The best scores are: opt bits E(85289)
NP_001269714 (OMIM: 580000,580000,610230,613070) m ( 376) 2619 621.2 1.2e-177
NP_060476 (OMIM: 580000,580000,610230,613070) mito ( 421) 2360 560.7 2.2e-159
XP_011528573 (OMIM: 580000,580000,610230,613070) P ( 386) 2137 508.5 1e-143
XP_011528574 (OMIM: 580000,580000,610230,613070) P ( 370) 1968 469.0 7.9e-132
XP_011528575 (OMIM: 580000,580000,610230,613070) P ( 355) 1760 420.3 3.4e-117
NP_001269711 (OMIM: 580000,580000,610230,613070) m ( 307) 1525 365.3 1e-100
XP_011528576 (OMIM: 580000,580000,610230,613070) P ( 307) 1525 365.3 1e-100
NP_001269713 (OMIM: 580000,580000,610230,613070) m ( 236) 1402 336.5 3.8e-92
XP_005261738 (OMIM: 580000,580000,610230,613070) P ( 244) 1402 336.5 3.9e-92
NP_001269712 (OMIM: 580000,580000,610230,613070) m ( 281) 1143 276.0 7.5e-74
XP_011528577 (OMIM: 580000,580000,610230,613070) P ( 289) 1143 276.0 7.7e-74
XP_005261735 (OMIM: 580000,580000,610230,613070) P ( 289) 1143 276.0 7.7e-74
>>NP_001269714 (OMIM: 580000,580000,610230,613070) mitoc (376 aa)
initn: 2619 init1: 2619 opt: 2619 Z-score: 3310.4 bits: 621.2 E(85289): 1.2e-177
Smith-Waterman score: 2619; 100.0% identity (100.0% similar) in 376 aa overlap (1-376:1-376)
10 20 30 40 50 60
pF1KB9 MQALRHVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEHGVCTADKDCEDAYRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQALRHVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEHGVCTADKDCEDAYRV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 CQILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CQILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DAIATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DAIATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 SQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 PGHFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPWYVVEKDSVKGDVFVAPRTDHPAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGHFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPWYVVEKDSVKGDVFVAPRTDHPAL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 YRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVCCVLQGGRVPGQREDPAAGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVCCVLQGGRVPGQREDPAAGA
310 320 330 340 350 360
370
pF1KB9 VCLHAPEGPAQSWDGH
::::::::::::::::
NP_001 VCLHAPEGPAQSWDGH
370
>>NP_060476 (OMIM: 580000,580000,610230,613070) mitochon (421 aa)
initn: 2358 init1: 2358 opt: 2360 Z-score: 2982.3 bits: 560.7 E(85289): 2.2e-159
Smith-Waterman score: 2360; 98.3% identity (98.3% similar) in 352 aa overlap (1-349:1-352)
10 20 30 40 50 60
pF1KB9 MQALRHVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEHGVCTADKDCEDAYRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MQALRHVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEHGVCTADKDCEDAYRV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 CQILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 CQILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DAIATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 DAIATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 SQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 PGHFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPWYVVEKDSVKGDVFVAPRTDHPAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 PGHFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPWYVVEKDSVKGDVFVAPRTDHPAL
250 260 270 280 290 300
310 320 330 340 350
pF1KB9 YRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVCCVL---QGGRVPGQREDPA
:::::::::::::::::::::::::::::::::::::::: ::: : : :
NP_060 YRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVTAVQAV
310 320 330 340 350 360
360 370
pF1KB9 AGAVCLHAPEGPAQSWDGH
NP_060 RALATGQFAVFYKGDECLGSGKILRLGPSAYTLQKGQRRAGMATESPSDSPEDGPGLSPL
370 380 390 400 410 420
>>XP_011528573 (OMIM: 580000,580000,610230,613070) PREDI (386 aa)
initn: 2135 init1: 2135 opt: 2137 Z-score: 2701.0 bits: 508.5 E(85289): 1e-143
Smith-Waterman score: 2137; 98.1% identity (98.1% similar) in 317 aa overlap (36-349:1-317)
10 20 30 40 50 60
pF1KB9 HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEHGVCTADKDCEDAYRVCQILD
::::::::::::::::::::::::::::::
XP_011 MKNWDSLDEHGVCTADKDCEDAYRVCQILD
10 20 30
70 80 90 100 110 120
pF1KB9 IPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADAIAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADAIAT
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB9 GHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQDAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQDAL
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB9 RRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPGHFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPGHFI
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB9 SIEDNKVLGTHKGWFLYTLGQRANIGGLREPWYVVEKDSVKGDVFVAPRTDHPALYRDLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SIEDNKVLGTHKGWFLYTLGQRANIGGLREPWYVVEKDSVKGDVFVAPRTDHPALYRDLL
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB9 RTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVCCVL---QGGRVPGQREDPAAGAVC
::::::::::::::::::::::::::::::::::: ::: : : :
XP_011 RTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVTAVQAVRALAT
280 290 300 310 320 330
370
pF1KB9 LHAPEGPAQSWDGH
XP_011 GQFAVFYKGDECLGSGKILRLGPSAYTLQKGQRRAGMATESPSDSPEDGPGLSPLL
340 350 360 370 380
>>XP_011528574 (OMIM: 580000,580000,610230,613070) PREDI (370 aa)
initn: 2031 init1: 1760 opt: 1968 Z-score: 2487.7 bits: 469.0 E(85289): 7.9e-132
Smith-Waterman score: 1981; 80.6% identity (83.4% similar) in 386 aa overlap (1-376:1-370)
10 20 30 40 50 60
pF1KB9 MQALRHVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEHGVCTADKDCEDAYRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MQALRHVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEHGVCTADKDCEDAYRV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 CQILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CQILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DAIATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DAIATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 SQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPR
190 200 210 220 230 240
250 260 270 280 290
pF1KB9 PGHFISIEDNKVLGTHKGWFLY----TLGQ-----RA-NIGGLREPWYVVEKDSVKGDVF
:::::::::::::::::: . : :: . :: . . :.: .
XP_011 PGHFISIEDNKVLGTHKGPPDRPPSPVQGPAEDQPRALDCGGASRSTGPGQDDGV--PLP
250 260 270 280 290
300 310 320 330 340 350
pF1KB9 VAPRTDHPALYRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVCCVLQGGRVP
. : :: : :: : ... . :: :::::::::::
XP_011 IPPPDGTSALCAD--PQSRWHRVGDSCAGCAC-----PCH-------RTVCCVLQGGRVP
300 310 320 330 340
360 370
pF1KB9 GQREDPAAGAVCLHAPEGPAQSWDGH
::::::::::::::::::::::::::
XP_011 GQREDPAAGAVCLHAPEGPAQSWDGH
350 360 370
>>XP_011528575 (OMIM: 580000,580000,610230,613070) PREDI (355 aa)
initn: 1760 init1: 1760 opt: 1760 Z-score: 2225.1 bits: 420.3 E(85289): 3.4e-117
Smith-Waterman score: 1760; 100.0% identity (100.0% similar) in 258 aa overlap (1-258:1-258)
10 20 30 40 50 60
pF1KB9 MQALRHVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEHGVCTADKDCEDAYRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MQALRHVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEHGVCTADKDCEDAYRV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 CQILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CQILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 DAIATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DAIATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 SQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 PGHFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPWYVVEKDSVKGDVFVAPRTDHPAL
::::::::::::::::::
XP_011 PGHFISIEDNKVLGTHKGPPDRPPSPVQGPAEDQPRALDCGGASRSTGPGQDDGVPLPIP
250 260 270 280 290 300
>>NP_001269711 (OMIM: 580000,580000,610230,613070) mitoc (307 aa)
initn: 1523 init1: 1523 opt: 1525 Z-score: 1929.0 bits: 365.3 E(85289): 1e-100
Smith-Waterman score: 1525; 97.4% identity (97.4% similar) in 234 aa overlap (119-349:5-238)
90 100 110 120 130 140
pF1KB9 YEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADAIATGHYARTSLEDEEVFEQKHVKKPE
::::::::::::::::::::::::::::::
NP_001 MMCSGADAIATGHYARTSLEDEEVFEQKHVKKPE
10 20 30
150 160 170 180 190 200
pF1KB9 GLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQDALRRTIFPLGGLTKEFVKKIAAENR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQDALRRTIFPLGGLTKEFVKKIAAENR
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB9 LHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPGHFISIEDNKVLGTHKGWFLYTLGQRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPGHFISIEDNKVLGTHKGWFLYTLGQRA
100 110 120 130 140 150
270 280 290 300 310 320
pF1KB9 NIGGLREPWYVVEKDSVKGDVFVAPRTDHPALYRDLLRTSRVHWIAEEPPAALVRDKMME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NIGGLREPWYVVEKDSVKGDVFVAPRTDHPALYRDLLRTSRVHWIAEEPPAALVRDKMME
160 170 180 190 200 210
330 340 350 360 370
pF1KB9 CHFRFRHQMALVCCVL---QGGRVPGQREDPAAGAVCLHAPEGPAQSWDGH
:::::::::::: ::: : : :
NP_001 CHFRFRHQMALVPCVLTLNQDGTVWVTAVQAVRALATGQFAVFYKGDECLGSGKILRLGP
220 230 240 250 260 270
>>XP_011528576 (OMIM: 580000,580000,610230,613070) PREDI (307 aa)
initn: 1523 init1: 1523 opt: 1525 Z-score: 1929.0 bits: 365.3 E(85289): 1e-100
Smith-Waterman score: 1525; 97.4% identity (97.4% similar) in 234 aa overlap (119-349:5-238)
90 100 110 120 130 140
pF1KB9 YEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADAIATGHYARTSLEDEEVFEQKHVKKPE
::::::::::::::::::::::::::::::
XP_011 MMCSGADAIATGHYARTSLEDEEVFEQKHVKKPE
10 20 30
150 160 170 180 190 200
pF1KB9 GLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQDALRRTIFPLGGLTKEFVKKIAAENR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQDALRRTIFPLGGLTKEFVKKIAAENR
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB9 LHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPGHFISIEDNKVLGTHKGWFLYTLGQRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPGHFISIEDNKVLGTHKGWFLYTLGQRA
100 110 120 130 140 150
270 280 290 300 310 320
pF1KB9 NIGGLREPWYVVEKDSVKGDVFVAPRTDHPALYRDLLRTSRVHWIAEEPPAALVRDKMME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NIGGLREPWYVVEKDSVKGDVFVAPRTDHPALYRDLLRTSRVHWIAEEPPAALVRDKMME
160 170 180 190 200 210
330 340 350 360 370
pF1KB9 CHFRFRHQMALVCCVL---QGGRVPGQREDPAAGAVCLHAPEGPAQSWDGH
:::::::::::: ::: : : :
XP_011 CHFRFRHQMALVPCVLTLNQDGTVWVTAVQAVRALATGQFAVFYKGDECLGSGKILRLGP
220 230 240 250 260 270
>>NP_001269713 (OMIM: 580000,580000,610230,613070) mitoc (236 aa)
initn: 1395 init1: 1395 opt: 1402 Z-score: 1775.3 bits: 336.5 E(85289): 3.8e-92
Smith-Waterman score: 1402; 93.9% identity (97.2% similar) in 213 aa overlap (164-376:24-236)
140 150 160 170 180 190
pF1KB9 EDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQDALRRTIFPLG
:.. .:.. . : .::::::::::::::
NP_001 MPLPQVTMQELPWKMKKSLSRSTLRSPKGFSEIGLKLEMVSQDALRRTIFPLG
10 20 30 40 50
200 210 220 230 240 250
pF1KB9 GLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPGHFISIEDNKVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPGHFISIEDNKVL
60 70 80 90 100 110
260 270 280 290 300 310
pF1KB9 GTHKGWFLYTLGQRANIGGLREPWYVVEKDSVKGDVFVAPRTDHPALYRDLLRTSRVHWI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTHKGWFLYTLGQRANIGGLREPWYVVEKDSVKGDVFVAPRTDHPALYRDLLRTSRVHWI
120 130 140 150 160 170
320 330 340 350 360 370
pF1KB9 AEEPPAALVRDKMMECHFRFRHQMALVCCVLQGGRVPGQREDPAAGAVCLHAPEGPAQSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AEEPPAALVRDKMMECHFRFRHQMALVCCVLQGGRVPGQREDPAAGAVCLHAPEGPAQSW
180 190 200 210 220 230
pF1KB9 DGH
:::
NP_001 DGH
>>XP_005261738 (OMIM: 580000,580000,610230,613070) PREDI (244 aa)
initn: 1395 init1: 1395 opt: 1402 Z-score: 1775.1 bits: 336.5 E(85289): 3.9e-92
Smith-Waterman score: 1402; 93.9% identity (97.2% similar) in 213 aa overlap (164-376:32-244)
140 150 160 170 180 190
pF1KB9 EDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQDALRRTIFPLG
:.. .:.. . : .::::::::::::::
XP_005 LWIILGQMPLPQVTMQELPWKMKKSLSRSTLRSPKGFSEIGLKLEMVSQDALRRTIFPLG
10 20 30 40 50 60
200 210 220 230 240 250
pF1KB9 GLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPGHFISIEDNKVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPGHFISIEDNKVL
70 80 90 100 110 120
260 270 280 290 300 310
pF1KB9 GTHKGWFLYTLGQRANIGGLREPWYVVEKDSVKGDVFVAPRTDHPALYRDLLRTSRVHWI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GTHKGWFLYTLGQRANIGGLREPWYVVEKDSVKGDVFVAPRTDHPALYRDLLRTSRVHWI
130 140 150 160 170 180
320 330 340 350 360 370
pF1KB9 AEEPPAALVRDKMMECHFRFRHQMALVCCVLQGGRVPGQREDPAAGAVCLHAPEGPAQSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AEEPPAALVRDKMMECHFRFRHQMALVCCVLQGGRVPGQREDPAAGAVCLHAPEGPAQSW
190 200 210 220 230 240
pF1KB9 DGH
:::
XP_005 DGH
>>NP_001269712 (OMIM: 580000,580000,610230,613070) mitoc (281 aa)
initn: 1134 init1: 1134 opt: 1143 Z-score: 1446.8 bits: 276.0 E(85289): 7.5e-74
Smith-Waterman score: 1143; 89.9% identity (93.7% similar) in 189 aa overlap (164-349:24-212)
140 150 160 170 180 190
pF1KB9 EDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQDALRRTIFPLG
:.. .:.. . : .::::::::::::::
NP_001 MPLPQVTMQELPWKMKKSLSRSTLRSPKGFSEIGLKLEMVSQDALRRTIFPLG
10 20 30 40 50
200 210 220 230 240 250
pF1KB9 GLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPGHFISIEDNKVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPGHFISIEDNKVL
60 70 80 90 100 110
260 270 280 290 300 310
pF1KB9 GTHKGWFLYTLGQRANIGGLREPWYVVEKDSVKGDVFVAPRTDHPALYRDLLRTSRVHWI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTHKGWFLYTLGQRANIGGLREPWYVVEKDSVKGDVFVAPRTDHPALYRDLLRTSRVHWI
120 130 140 150 160 170
320 330 340 350 360 370
pF1KB9 AEEPPAALVRDKMMECHFRFRHQMALVCCVL---QGGRVPGQREDPAAGAVCLHAPEGPA
::::::::::::::::::::::::::: ::: : : :
NP_001 AEEPPAALVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVTAVQAVRALATGQFAVFYK
180 190 200 210 220 230
pF1KB9 QSWDGH
NP_001 GDECLGSGKILRLGPSAYTLQKGQRRAGMATESPSDSPEDGPGLSPLL
240 250 260 270 280
376 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 17:01:14 2016 done: Fri Nov 4 17:01:16 2016
Total Scan time: 7.650 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]