FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9273, 376 aa
  1>>>pF1KB9273 376 - 376 aa - 376 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3998+/-0.000823; mu= 15.5856+/- 0.049
 mean_var=60.5803+/-12.184, 0's: 0 Z-trim(106.4): 10  B-trim: 458 in 1/51
 Lambda= 0.164782
 statistics sampled from 8954 (8958) to 8954 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.667), E-opt: 0.2 (0.275), width:  16
 Scan time:  2.690

The best scores are:                                      opt bits E(32554)
CCDS63510.1 TRMU gene_id:55687|Hs108|chr22         ( 376) 2619 631.1 4.8e-181
CCDS14075.1 TRMU gene_id:55687|Hs108|chr22         ( 421) 2360 569.5 1.8e-162


>>CCDS63510.1 TRMU gene_id:55687|Hs108|chr22              (376 aa)
 initn: 2619 init1: 2619 opt: 2619  Z-score: 3363.8  bits: 631.1 E(32554): 4.8e-181
Smith-Waterman score: 2619; 100.0% identity (100.0% similar) in 376 aa overlap (1-376:1-376)

               10        20        30        40        50        60
pF1KB9 MQALRHVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEHGVCTADKDCEDAYRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MQALRHVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEHGVCTADKDCEDAYRV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 CQILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 CQILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 DAIATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 DAIATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 SQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 SQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 PGHFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPWYVVEKDSVKGDVFVAPRTDHPAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 PGHFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPWYVVEKDSVKGDVFVAPRTDHPAL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 YRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVCCVLQGGRVPGQREDPAAGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 YRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVCCVLQGGRVPGQREDPAAGA
              310       320       330       340       350       360

              370      
pF1KB9 VCLHAPEGPAQSWDGH
       ::::::::::::::::
CCDS63 VCLHAPEGPAQSWDGH
              370      

>>CCDS14075.1 TRMU gene_id:55687|Hs108|chr22              (421 aa)
 initn: 2358 init1: 2358 opt: 2360  Z-score: 3030.2  bits: 569.5 E(32554): 1.8e-162
Smith-Waterman score: 2360; 98.3% identity (98.3% similar) in 352 aa overlap (1-349:1-352)

               10        20        30        40        50        60
pF1KB9 MQALRHVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEHGVCTADKDCEDAYRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MQALRHVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEHGVCTADKDCEDAYRV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 CQILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 CQILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 DAIATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DAIATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 SQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 PGHFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPWYVVEKDSVKGDVFVAPRTDHPAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PGHFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPWYVVEKDSVKGDVFVAPRTDHPAL
              250       260       270       280       290       300

              310       320       330       340          350       
pF1KB9 YRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVCCVL---QGGRVPGQREDPA
       :::::::::::::::::::::::::::::::::::::::: :::   : : :        
CCDS14 YRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVTAVQAV
              310       320       330       340       350       360

       360       370                                               
pF1KB9 AGAVCLHAPEGPAQSWDGH                                         
                                                                   
CCDS14 RALATGQFAVFYKGDECLGSGKILRLGPSAYTLQKGQRRAGMATESPSDSPEDGPGLSPL
              370       380       390       400       410       420




376 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:01:14 2016 done: Fri Nov  4 17:01:14 2016
 Total Scan time:  2.690 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]