FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9261, 204 aa
  1>>>pF1KB9261 204 - 204 aa - 204 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6057+/-0.000253; mu= 4.9780+/- 0.016
 mean_var=140.1457+/-28.249, 0's: 0 Z-trim(124.4): 2  B-trim: 0 in 0/57
 Lambda= 0.108339
 statistics sampled from 46135 (46137) to 46135 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.826), E-opt: 0.2 (0.541), width:  16
 Scan time:  6.670

The best scores are:                                      opt bits E(85289)
NP_542174 (OMIM: 616537) V-set and transmembrane d ( 204) 1405 229.6 2.8e-60
XP_011526832 (OMIM: 616537) PREDICTED: V-set and t ( 187)  692 118.1 9.1e-27


>>NP_542174 (OMIM: 616537) V-set and transmembrane domai  (204 aa)
 initn: 1405 init1: 1405 opt: 1405  Z-score: 1203.2  bits: 229.6 E(85289): 2.8e-60
Smith-Waterman score: 1405; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)

               10        20        30        40        50        60
pF1KB9 MGAPLAVALGALHYLALFLQLGGATRPAGHAPWDNHVSGHALFTETPHDMTARTGEDVEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 MGAPLAVALGALHYLALFLQLGGATRPAGHAPWDNHVSGHALFTETPHDMTARTGEDVEM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 ACSFRGSGSPSYSLEIQWWYVRSHRDWTDKQAWASNQLKASQQEDAGKEATKISVVKVVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 ACSFRGSGSPSYSLEIQWWYVRSHRDWTDKQAWASNQLKASQQEDAGKEATKISVVKVVG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 SNISHKLRLSRVKPTDEGTYECRVIDFSDGKARHHKVKAYLRVQPGENSVLHLPEAPPAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 SNISHKLRLSRVKPTDEGTYECRVIDFSDGKARHHKVKAYLRVQPGENSVLHLPEAPPAA
              130       140       150       160       170       180

              190       200    
pF1KB9 PAPPPPKPGKELRKRSVDQEACSL
       ::::::::::::::::::::::::
NP_542 PAPPPPKPGKELRKRSVDQEACSL
              190       200    

>>XP_011526832 (OMIM: 616537) PREDICTED: V-set and trans  (187 aa)
 initn: 748 init1: 692 opt: 692  Z-score: 601.5  bits: 118.1 E(85289): 9.1e-27
Smith-Waterman score: 1261; 91.7% identity (91.7% similar) in 204 aa overlap (1-204:1-187)

               10        20        30        40        50        60
pF1KB9 MGAPLAVALGALHYLALFLQLGGATRPAGHAPWDNHVSGHALFTETPHDMTARTGEDVEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MGAPLAVALGALHYLALFLQLGGATRPAGHAPWDNHVSGHALFTETPHDMTARTGEDVEM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 ACSFRGSGSPSYSLEIQWWYVRSHRDWTDKQAWASNQLKASQQEDAGKEATKISVVKVVG
       :::::::::::::::::::::::::::::::::::::                 ::::::
XP_011 ACSFRGSGSPSYSLEIQWWYVRSHRDWTDKQAWASNQ-----------------VVKVVG
               70        80        90                        100   

              130       140       150       160       170       180
pF1KB9 SNISHKLRLSRVKPTDEGTYECRVIDFSDGKARHHKVKAYLRVQPGENSVLHLPEAPPAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SNISHKLRLSRVKPTDEGTYECRVIDFSDGKARHHKVKAYLRVQPGENSVLHLPEAPPAA
           110       120       130       140       150       160   

              190       200    
pF1KB9 PAPPPPKPGKELRKRSVDQEACSL
       ::::::::::::::::::::::::
XP_011 PAPPPPKPGKELRKRSVDQEACSL
           170       180       




204 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:14:55 2016 done: Sat Nov  5 13:14:56 2016
 Total Scan time:  6.670 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]