Result of FASTA (ccds) for
pF1KB9261
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9261, 204 aa
1>>>pF1KB9261 204 - 204 aa - 204 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.4541+/-0.000637; mu= 6.1316+/- 0.039
mean_var=140.2423+/-28.373, 0's: 0 Z-trim(116.6): 5 B-trim: 0 in 0/52
Lambda= 0.108302
statistics sampled from 17180 (17185) to 17180 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.825), E-opt: 0.2 (0.528), width: 16
Scan time: 2.430
The best scores are: opt bits E(32554)
CCDS13299.1 VSTM2L gene_id:128434|Hs108|chr20 ( 204) 1405 229.5 1.1e-60
CCDS46034.1 VSTM2B gene_id:342865|Hs108|chr19 ( 285) 410 74.1 9.3e-14
CCDS5512.2 VSTM2A gene_id:222008|Hs108|chr7 ( 236) 393 71.4 5.1e-13
CCDS75604.1 VSTM2A gene_id:222008|Hs108|chr7 ( 240) 393 71.4 5.1e-13
CCDS83185.1 VSTM2A gene_id:222008|Hs108|chr7 ( 244) 393 71.4 5.2e-13
>>CCDS13299.1 VSTM2L gene_id:128434|Hs108|chr20 (204 aa)
initn: 1405 init1: 1405 opt: 1405 Z-score: 1202.7 bits: 229.5 E(32554): 1.1e-60
Smith-Waterman score: 1405; 100.0% identity (100.0% similar) in 204 aa overlap (1-204:1-204)
10 20 30 40 50 60
pF1KB9 MGAPLAVALGALHYLALFLQLGGATRPAGHAPWDNHVSGHALFTETPHDMTARTGEDVEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MGAPLAVALGALHYLALFLQLGGATRPAGHAPWDNHVSGHALFTETPHDMTARTGEDVEM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 ACSFRGSGSPSYSLEIQWWYVRSHRDWTDKQAWASNQLKASQQEDAGKEATKISVVKVVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ACSFRGSGSPSYSLEIQWWYVRSHRDWTDKQAWASNQLKASQQEDAGKEATKISVVKVVG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 SNISHKLRLSRVKPTDEGTYECRVIDFSDGKARHHKVKAYLRVQPGENSVLHLPEAPPAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SNISHKLRLSRVKPTDEGTYECRVIDFSDGKARHHKVKAYLRVQPGENSVLHLPEAPPAA
130 140 150 160 170 180
190 200
pF1KB9 PAPPPPKPGKELRKRSVDQEACSL
::::::::::::::::::::::::
CCDS13 PAPPPPKPGKELRKRSVDQEACSL
190 200
>>CCDS46034.1 VSTM2B gene_id:342865|Hs108|chr19 (285 aa)
initn: 486 init1: 223 opt: 410 Z-score: 360.4 bits: 74.1 E(32554): 9.3e-14
Smith-Waterman score: 410; 50.8% identity (80.6% similar) in 124 aa overlap (41-163:28-148)
20 30 40 50 60 70
pF1KB9 ALHYLALFLQLGGATRPAGHAPWDNHVSGHALFTETPHDMTARTGEDVEMACSFRGSGSP
: :::.:.:.:.: :.:.:: :.::.::.
CCDS46 MEQRNRLGALGYLPPLLLHALLLFVADAAFTEVPKDVTVREGDDIEMPCAFRASGAT
10 20 30 40 50
80 90 100 110 120
pF1KB9 SYSLEIQWWYVRSH-RDWTDKQAWASNQLKASQQEDAGKEATKISVVKVVGSNISHKLRL
::::::::::.. :. . : . . ..... ..:.:::::.:.: :..:::.:::
CCDS46 SYSLEIQWWYLKEPPRELLHELALS---VPGARSKVTNKDATKISTVRVQGNDISHRLRL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB9 SRVKPTDEGTYECRVIDFSDGKARHHKVKAYLRVQPGENSVLHLPEAPPAAPAPPPPKPG
: :. :::.::::: :.:: ...::..:.:::
CCDS46 SAVRLQDEGVYECRVSDYSDDDTQEHKAQAMLRVLSRFAPPNMQAAEAVSHIQSSGPRRH
120 130 140 150 160 170
190 200
pF1KB9 KELRKRSVDQEACSL
CCDS46 GPASAANANNAGAASRTTSEPGRGDKSPPPGSPPAAIDPAVPEAAAASAAHTPTTTVAAA
180 190 200 210 220 230
>>CCDS5512.2 VSTM2A gene_id:222008|Hs108|chr7 (236 aa)
initn: 385 init1: 301 opt: 393 Z-score: 347.3 bits: 71.4 E(32554): 5.1e-13
Smith-Waterman score: 393; 44.1% identity (74.1% similar) in 143 aa overlap (37-178:23-164)
10 20 30 40 50 60
pF1KB9 VALGALHYLALFLQLGGATRPAGHAPWDNHVSGHALFTETPHDMTARTGEDVEMACSFRG
.:..: ::: :...:: :..:::.:.:.
CCDS55 MMGIFLVYVGFVFFSVLYVQQGLSSQAKFTEFPRNVTATEGQNVEMSCAFQ-
10 20 30 40 50
70 80 90 100 110 120
pF1KB9 SGSPSYSLEIQWWYVRSHRDWTDKQAWASNQLKASQQEDAGKEATKISVVKVVGSNISHK
::: : ::::::..:. .: :. :.. ..: ...::::.::: :..::::
CCDS55 SGSASVYLEIQWWFLRGPEDLDPGAEGAGAQVELLPDRDPDSDGTKISTVKVQGNDISHK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB9 LRLSRVKPTDEGTYECRVIDFSDGKARHHKVKAYLRVQPGENSV-LHLPEAPPAAPAPPP
:..:.:. ::: ::::: : . :. ..::..:::.:. . .. .. :: :
CCDS55 LQISKVRKKDEGLYECRVTDANYGELQEHKAQAYLKVNANSHARRMQAFEASPMWLQDMK
120 130 140 150 160 170
190 200
pF1KB9 PKPGKELRKRSVDQEACSL
CCDS55 PRKNVSAAIPSSIHGSANQRTHSTSSPQVVAKIPKQSPQSGARIATSHGLSVLLLVCGFV
180 190 200 210 220 230
>>CCDS75604.1 VSTM2A gene_id:222008|Hs108|chr7 (240 aa)
initn: 385 init1: 301 opt: 393 Z-score: 347.2 bits: 71.4 E(32554): 5.1e-13
Smith-Waterman score: 393; 44.1% identity (74.1% similar) in 143 aa overlap (37-178:23-164)
10 20 30 40 50 60
pF1KB9 VALGALHYLALFLQLGGATRPAGHAPWDNHVSGHALFTETPHDMTARTGEDVEMACSFRG
.:..: ::: :...:: :..:::.:.:.
CCDS75 MMGIFLVYVGFVFFSVLYVQQGLSSQAKFTEFPRNVTATEGQNVEMSCAFQ-
10 20 30 40 50
70 80 90 100 110 120
pF1KB9 SGSPSYSLEIQWWYVRSHRDWTDKQAWASNQLKASQQEDAGKEATKISVVKVVGSNISHK
::: : ::::::..:. .: :. :.. ..: ...::::.::: :..::::
CCDS75 SGSASVYLEIQWWFLRGPEDLDPGAEGAGAQVELLPDRDPDSDGTKISTVKVQGNDISHK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB9 LRLSRVKPTDEGTYECRVIDFSDGKARHHKVKAYLRVQPGENSV-LHLPEAPPAAPAPPP
:..:.:. ::: ::::: : . :. ..::..:::.:. . .. .. :: :
CCDS75 LQISKVRKKDEGLYECRVTDANYGELQEHKAQAYLKVNANSHARRMQAFEASPMWLQDMK
120 130 140 150 160 170
190 200
pF1KB9 PKPGKELRKRSVDQEACSL
CCDS75 PRKNVSAAIPSSIHGSANQRTHSTSSPQVVAKIPKQSPQSAKSKSPVKSTERTAKLTLNS
180 190 200 210 220 230
>>CCDS83185.1 VSTM2A gene_id:222008|Hs108|chr7 (244 aa)
initn: 385 init1: 301 opt: 393 Z-score: 347.1 bits: 71.4 E(32554): 5.2e-13
Smith-Waterman score: 393; 44.1% identity (74.1% similar) in 143 aa overlap (37-178:23-164)
10 20 30 40 50 60
pF1KB9 VALGALHYLALFLQLGGATRPAGHAPWDNHVSGHALFTETPHDMTARTGEDVEMACSFRG
.:..: ::: :...:: :..:::.:.:.
CCDS83 MMGIFLVYVGFVFFSVLYVQQGLSSQAKFTEFPRNVTATEGQNVEMSCAFQ-
10 20 30 40 50
70 80 90 100 110 120
pF1KB9 SGSPSYSLEIQWWYVRSHRDWTDKQAWASNQLKASQQEDAGKEATKISVVKVVGSNISHK
::: : ::::::..:. .: :. :.. ..: ...::::.::: :..::::
CCDS83 SGSASVYLEIQWWFLRGPEDLDPGAEGAGAQVELLPDRDPDSDGTKISTVKVQGNDISHK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB9 LRLSRVKPTDEGTYECRVIDFSDGKARHHKVKAYLRVQPGENSV-LHLPEAPPAAPAPPP
:..:.:. ::: ::::: : . :. ..::..:::.:. . .. .. :: :
CCDS83 LQISKVRKKDEGLYECRVTDANYGELQEHKAQAYLKVNANSHARRMQAFEASPMWLQDMK
120 130 140 150 160 170
190 200
pF1KB9 PKPGKELRKRSVDQEACSL
CCDS83 PRKNVSAAIPSSIHGSANQRTHSTSSPQVVAKIPKQSPQSGMETHFEPFILPLTNAPQKG
180 190 200 210 220 230
204 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 13:14:54 2016 done: Sat Nov 5 13:14:55 2016
Total Scan time: 2.430 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]