Result of FASTA (ccds) for
pF1KB9134
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9134, 1312 aa
1>>>pF1KB9134 1312 - 1312 aa - 1312 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 13.1603+/-0.00172; mu= -12.5335+/- 0.100
mean_var=545.3212+/-117.336, 0's: 0 Z-trim(106.0): 185 B-trim: 0 in 0/53
Lambda= 0.054922
statistics sampled from 8634 (8760) to 8634 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.575), E-opt: 0.2 (0.269), width: 16
Scan time: 5.120
The best scores are: opt bits E(32554)
CCDS34233.1 RAD50 gene_id:10111|Hs108|chr5 (1312) 8364 679.7 1.4e-194
>>CCDS34233.1 RAD50 gene_id:10111|Hs108|chr5 (1312 aa)
initn: 8364 init1: 8364 opt: 8364 Z-score: 3606.8 bits: 679.7 E(32554): 1.4e-194
Smith-Waterman score: 8364; 100.0% identity (100.0% similar) in 1312 aa overlap (1-1312:1-1312)
10 20 30 40 50 60
pF1KB9 MSRIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MSRIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 TKGNTFVHDPKVAQETDVRAQIRLQFRDVNGELIAVQRSMVCTQKSKKTEFKTLEGVITR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TKGNTFVHDPKVAQETDVRAQIRLQFRDVNGELIAVQRSMVCTQKSKKTEFKTLEGVITR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 TKHGEKVSLSSKCAEIDREMISSLGVSKAVLNNVIFCHQEDSNWPLSEGKALKQKFDEIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TKHGEKVSLSSKCAEIDREMISSLGVSKAVLNNVIFCHQEDSNWPLSEGKALKQKFDEIF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 SATRYIKALETLRQVRQTQGQKVKEYQMELKYLKQYKEKACEIRDQITSKEAQLTSSKEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SATRYIKALETLRQVRQTQGQKVKEYQMELKYLKQYKEKACEIRDQITSKEAQLTSSKEI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 VKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALDSRKKQMEKDNSELEEKMEKVFQGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALDSRKKQMEKDNSELEEKMEKVFQGT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 DEQLNDLYHNHQRTVREKERKLVDCHRELEKLNKESRLLNQEKSELLVEQGRLQLQADRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DEQLNDLYHNHQRTVREKERKLVDCHRELEKLNKESRLLNQEKSELLVEQGRLQLQADRH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 QEHIRARDSLIQSLATQLELDGFERGPFSERQIKNFHKLVRERQEGEAKTANQLMNDFAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QEHIRARDSLIQSLATQLELDGFERGPFSERQIKNFHKLVRERQEGEAKTANQLMNDFAE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 KETLKQKQIDEIRDKKTGLGRIIELKSEILSKKQNELKNVKYELQQLEGSSDRILELDQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KETLKQKQIDEIRDKKTGLGRIIELKSEILSKKQNELKNVKYELQQLEGSSDRILELDQE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 LIKAERELSKAEKNSNVETLKMEVISLQNEKADLDRTLRKLDQEMEQLNHHTTTRTQMEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LIKAERELSKAEKNSNVETLKMEVISLQNEKADLDRTLRKLDQEMEQLNHHTTTRTQMEM
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 LTKDKADKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LTKDKADKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 LASSEQNKNHINNELKRKEEQLSSYEDKLFDVCGSQDFESDLDRLKEEIEKSSKQRAMLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LASSEQNKNHINNELKRKEEQLSSYEDKLFDVCGSQDFESDLDRLKEEIEKSSKQRAMLA
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB9 GATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEVISDLQSKLRLAPDKLKSTESELK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEVISDLQSKLRLAPDKLKSTESELK
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB9 KKEKRRDEMLGLVPMRQSIIDLKEKEIPELRNKLQNVNRDIQRLKNDIEEQETLLGTIMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KKEKRRDEMLGLVPMRQSIIDLKEKEIPELRNKLQNVNRDIQRLKNDIEEQETLLGTIMP
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB9 EEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGIDLDRTVQQVNQEKQEKQHKLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGIDLDRTVQQVNQEKQEKQHKLD
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB9 TVSSKIELNRKLIQDQQEQIQHLKSTTNELKSEKLQISTNLQRRQQLEEQTVELSTEVQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TVSSKIELNRKLIQDQQEQIQHLKSTTNELKSEKLQISTNLQRRQQLEEQTVELSTEVQS
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB9 LYREIKDAKEQVSPLETTLEKFQQEKEELINKKNTSNKIAQDKLNDIKEKVKNIHGYMKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LYREIKDAKEQVSPLETTLEKFQQEKEELINKKNTSNKIAQDKLNDIKEKVKNIHGYMKD
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KB9 IENYIQDGKDDYKKQKETELNKVIAQLSECEKHKEKINEDMRLMRQDIDTQKIQERWLQD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 IENYIQDGKDDYKKQKETELNKVIAQLSECEKHKEKINEDMRLMRQDIDTQKIQERWLQD
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KB9 NLTLRKRNEELKEVEEERKQHLKEMGQMQVLQMKSEHQKLEENIDNIKRNHNLALGRQKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 NLTLRKRNEELKEVEEERKQHLKEMGQMQVLQMKSEHQKLEENIDNIKRNHNLALGRQKG
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KB9 YEEEIIHFKKELREPQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 YEEEIIHFKKELREPQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKM
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KB9 EEINKIIRDLWRSTYRGQDIEYIEIRSDADENVSASDKRRNYNYRVVMLKGDTALDMRGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EEINKIIRDLWRSTYRGQDIEYIEIRSDADENVSASDKRRNYNYRVVMLKGDTALDMRGR
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KB9 CSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 CSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQR
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310
pF1KB9 NFQLLVITHDEDFVELLGRSEYVEKFYRIKKNIDQCSEIVKCSVSSLGFNVH
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 NFQLLVITHDEDFVELLGRSEYVEKFYRIKKNIDQCSEIVKCSVSSLGFNVH
1270 1280 1290 1300 1310
1312 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 16:32:01 2016 done: Tue Nov 8 16:32:02 2016
Total Scan time: 5.120 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]