FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9101, 1158 aa
  1>>>pF1KB9101 1158 - 1158 aa - 1158 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9751+/-0.00111; mu= 9.0532+/- 0.067
 mean_var=114.1594+/-22.592, 0's: 0 Z-trim(106.1): 25  B-trim: 10 in 1/49
 Lambda= 0.120038
 statistics sampled from 8775 (8789) to 8775 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.626), E-opt: 0.2 (0.27), width:  16
 Scan time:  5.200

The best scores are:                                      opt bits E(32554)
CCDS13568.1 NRIP1 gene_id:8204|Hs108|chr21         (1158) 7528 1315.5       0


>>CCDS13568.1 NRIP1 gene_id:8204|Hs108|chr21              (1158 aa)
 initn: 7528 init1: 7528 opt: 7528  Z-score: 7044.8  bits: 1315.5 E(32554):    0
Smith-Waterman score: 7528; 99.9% identity (99.9% similar) in 1158 aa overlap (1-1158:1-1158)

               10        20        30        40        50        60
pF1KB9 MTHGEELGSDVHQDSIVLTYLEGLLMHQAAGGSGTAVDKKSAGHNEEDQNFNISGSAFPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MTHGEELGSDVHQDSIVLTYLEGLLMHQAAGGSGTAVDKKSAGHNEEDQNFNISGSAFPT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 CQSNGPVLNTHTYQGSGMLHLKKARLLQSSEDWNAAKRKRLSDSIMNLNVKKEALLAGMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CQSNGPVLNTHTYQGSGMLHLKKARLLQSSEDWNAAKRKRLSDSIMNLNVKKEALLAGMV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 DSVPKGKQDSTLLASLLQSFSSRLQTVALSQQIRQSLKEQGYALSHDSLKVEKDLRCYGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DSVPKGKQDSTLLASLLQSFSSRLQTVALSQQIRQSLKEQGYALSHDSLKVEKDLRCYGV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 ASSHLKTLLKKSKVKDQKPDTNLPDVTKNLIRDRFAESPHHVGQSGTKVMSEPLSCAARL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ASSHLKTLLKKSKVKDQKPDTNLPDVTKNLIRDRFAESPHHVGQSGTKVMSEPLSCAARL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 QAVASMVEKRASPATSPKPSVACSQLALLLSSEAHLQQYSREHALKTQNANQAASERLAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QAVASMVEKRASPATSPKPSVACSQLALLLSSEAHLQQYSREHALKTQNANQAASERLAA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 MARLQENGQKDVGSYQLPKGMSSHLNGQARTSSSKLMASKSSATVFQNPMGIIPSSPKNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MARLQENGQKDVGSYQLPKGMSSHLNGQARTSSSKLMASKSSATVFQNPMGIIPSSPKNA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 GYKNSLERNNIKQAANNSLLLHLLKSQTIPKPMNGHSHSERGSIFEESSTPTTIDEYSDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GYKNSLERNNIKQAANNSLLLHLLKSQTIPKPMNGHSHSERGSIFEESSTPTTIDEYSDN
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 NPSFTDDSSGDESSYSNCVPIDLSCKHRTEKSESDQPVSLDNFTQSLLNTWDPKVPDVDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NPSFTDDSSGDESSYSNCVPIDLSCKHRTEKSESDQPVSLDNFTQSLLNTWDPKVPDVDI
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 KEDQDTSKNSKLNSHQKVTLLQLLLGHKNEENVEKNTSPQGVHNDVSKFNTQNYARTSVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KEDQDTSKNSKLNSHQKVTLLQLLLGHKNEENVEKNTSPQGVHNDVSKFNTQNYARTSVI
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB9 ESPSTNRTTPVSTPPLLTSSKAGSPINLSQHSLVIKWNSPPYVCSTQSEKLTNTASNHSM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ESPSTNRTTPVSTPPLLTSSKAGSPINLSQHSLVIKWNSPPYVCSTQSEKLTNTASNHSM
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB9 DLTKSKDPPGEKPAQNEGAQNSATFSASKLLQNLAQCGMQSSMSVEEQRPSKQLLTGNTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DLTKSKDPPGEKPAQNEGAQNSATFSASKLLQNLAQCGMQSSMSVEEQRPSKQLLTGNTD
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB9 KPIGMIDRLNSPLLSNKTNAVEENKAFSSQPTGPEPGLSGSEIENLLERRTVLQLLLGNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KPIGMIDRLNSPLLSNKTNAVEENKAFSSQPTGPEPGLSGSEIENLLERRTVLQLLLGNP
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB9 NKGKSEKKEKTPLRDESTQEHSERALSEQILMVKIKSEPCDDLQIPNTNVHLSHDAKSAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NKGKSEKKEKTPLRDESTQEHSERALSEQILMVKIKSEPCDDLQIPNTNVHLSHDAKSAP
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB9 FLGMAPAVQRSAPALPVSEDFKSEPVSPQDFSFSKNGLLSRLLRQNQDSYLADDSDRSHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FLGMAPAVQRSAPALPVSEDFKSEPVSPQDFSFSKNGLLSRLLRQNQDSYLADDSDRSHR
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB9 NNEMALLESKNLCMVPKKRKLYTEPLENPFKKMKNNIVDAANNHSAPEVLYGSLLNQEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NNEMALLESKNLCMVPKKRKLYTEPLENPFKKMKNNIVDAANNHSAPEVLYGSLLNQEEL
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KB9 KFSRNDLEFKYPAGHGSASESEHRSWARESKSFNVLKQLLLSENCVRDLSPHRSNSVADS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KFSRNDLEFKYPAGHGSASESEHRSWARESKSFNVLKQLLLSENCVRDLSPHRSNSVADS
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KB9 KKKGHKNNVTNSKPEFSISSLNGLMYSSTQPSSCMDNRTFSYPGVVKTPVSPTFPEHLGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KKKGHKNNVTNSKPEFSISSLNGLMYSSTQPSSCMDNRTFSYPGVVKTPVSPTFPEHLGC
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KB9 AGSRPESGLLNGCSMPSEKGPIKWVITDAEKNEYEKDSPRLTKTNPILYYMLQKGGNSVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AGSRPESGLLNGCSMPSEKGPIKWVITDAEKNEYEKDSPRLTKTNPILYYMLQKGGNSVT
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KB9 SRETQDKDIWREPSSAESVSQVTAKEELLPTAETKASFFNLRSPYNSHMGNNASRPHSAN
       :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SRETQDKDIWREASSAESVSQVTAKEELLPTAETKASFFNLRSPYNSHMGNNASRPHSAN
             1090      1100      1110      1120      1130      1140

             1150        
pF1KB9 GEVYGLLGSVLTIKKESE
       ::::::::::::::::::
CCDS13 GEVYGLLGSVLTIKKESE
             1150        




1158 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 18:20:29 2016 done: Thu Nov  3 18:20:29 2016
 Total Scan time:  5.200 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]