Result of FASTA (omim) for
pF1KB9038
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9038, 444 aa
1>>>pF1KB9038 444 - 444 aa - 444 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2551+/-0.000391; mu= 18.1961+/- 0.025
mean_var=69.7895+/-13.737, 0's: 0 Z-trim(112.6): 63 B-trim: 511 in 2/51
Lambda= 0.153525
statistics sampled from 21502 (21570) to 21502 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.62), E-opt: 0.2 (0.253), width: 16
Scan time: 8.390
The best scores are: opt bits E(85289)
NP_821133 (OMIM: 156610,191130,615771) tubulin bet ( 444) 2987 670.9 1.9e-192
NP_006079 (OMIM: 602660) tubulin beta-4B chain [Ho ( 445) 2929 658.0 1.4e-188
NP_006078 (OMIM: 602662) tubulin beta-4A chain iso ( 444) 2893 650.0 3.5e-186
NP_001276058 (OMIM: 602662) tubulin beta-4A chain ( 444) 2893 650.0 3.5e-186
NP_001276056 (OMIM: 602662) tubulin beta-4A chain ( 489) 2893 650.1 3.8e-186
NP_001276052 (OMIM: 602662) tubulin beta-4A chain ( 495) 2893 650.1 3.8e-186
NP_821080 (OMIM: 610031,612850) tubulin beta-2B ch ( 445) 2885 648.3 1.2e-185
NP_001060 (OMIM: 615101,615763) tubulin beta-2A ch ( 445) 2866 644.1 2.2e-184
NP_001280141 (OMIM: 156610,191130,615771) tubulin ( 464) 2862 643.2 4.2e-184
NP_006077 (OMIM: 600638,602661,614039) tubulin bet ( 450) 2793 627.9 1.6e-179
NP_001290453 (OMIM: 615103) tubulin beta-6 chain i ( 446) 2741 616.4 4.8e-176
NP_115914 (OMIM: 615103) tubulin beta-6 chain isof ( 446) 2741 616.4 4.8e-176
NP_817124 (OMIM: 616768,616780) tubulin beta-8 cha ( 444) 2738 615.7 7.5e-176
NP_001280143 (OMIM: 156610,191130,615771) tubulin ( 400) 2599 584.9 1.3e-166
NP_001280144 (OMIM: 156610,191130,615771) tubulin ( 372) 2492 561.2 1.6e-159
NP_001280145 (OMIM: 156610,191130,615771) tubulin ( 372) 2492 561.2 1.6e-159
NP_110400 (OMIM: 612901,613112) tubulin beta-1 cha ( 451) 2433 548.2 1.6e-155
NP_001276060 (OMIM: 602662) tubulin beta-4A chain ( 372) 2418 544.8 1.4e-154
NP_001276059 (OMIM: 602662) tubulin beta-4A chain ( 372) 2418 544.8 1.4e-154
NP_001184110 (OMIM: 600638,602661,614039) tubulin ( 378) 2347 529.1 7.8e-150
NP_001290456 (OMIM: 615103) tubulin beta-6 chain i ( 374) 2328 524.9 1.4e-148
XP_011517761 (OMIM: 616768,616780) PREDICTED: tubu ( 372) 2318 522.6 6.6e-148
XP_016883574 (OMIM: 612901,613112) PREDICTED: tubu ( 429) 2279 514.0 2.9e-145
NP_001297244 (OMIM: 615101,615763) tubulin beta-2A ( 360) 2253 508.2 1.4e-143
NP_001290457 (OMIM: 615103) tubulin beta-6 chain i ( 381) 2189 494.1 2.7e-139
NP_001290455 (OMIM: 615103) tubulin beta-6 chain i ( 409) 2180 492.1 1.1e-138
XP_016871681 (OMIM: 616768,616780) PREDICTED: tubu ( 332) 2040 461.0 2.1e-129
XP_016871682 (OMIM: 616768,616780) PREDICTED: tubu ( 332) 2040 461.0 2.1e-129
NP_001290459 (OMIM: 615103) tubulin beta-6 chain i ( 300) 1835 415.6 8.8e-116
NP_001290458 (OMIM: 615103) tubulin beta-6 chain i ( 300) 1835 415.6 8.8e-116
XP_011517762 (OMIM: 616768,616780) PREDICTED: tubu ( 291) 1658 376.4 5.5e-104
NP_005991 (OMIM: 191110,616208) tubulin alpha-4A c ( 448) 1296 296.3 1.1e-79
NP_006073 (OMIM: 602530) tubulin alpha-1B chain [H ( 451) 1288 294.6 3.6e-79
NP_005992 (OMIM: 602528) tubulin alpha-3C/D chain ( 450) 1281 293.0 1.1e-78
NP_001257328 (OMIM: 602529,611603) tubulin alpha-1 ( 451) 1280 292.8 1.2e-78
NP_006000 (OMIM: 602529,611603) tubulin alpha-1A c ( 451) 1280 292.8 1.2e-78
NP_061816 (OMIM: 605742,613180) tubulin alpha-8 ch ( 449) 1262 288.8 2e-77
NP_001265481 (OMIM: 191110,616208) tubulin alpha-4 ( 433) 1244 284.8 3e-76
NP_001257329 (OMIM: 602529,611603) tubulin alpha-1 ( 416) 1173 269.1 1.6e-71
NP_001180343 (OMIM: 605742,613180) tubulin alpha-8 ( 383) 1092 251.1 3.7e-66
NP_001061 (OMIM: 191135,615412) tubulin gamma-1 ch ( 451) 1007 232.3 2e-60
NP_057521 (OMIM: 605785) tubulin gamma-2 chain iso ( 451) 998 230.3 7.9e-60
NP_001280142 (OMIM: 156610,191130,615771) tubulin ( 242) 848 196.9 4.8e-50
XP_016860313 (OMIM: 191110,616208) PREDICTED: tubu ( 295) 787 183.5 6.5e-46
NP_001307438 (OMIM: 605785) tubulin gamma-2 chain ( 460) 619 146.4 1.5e-34
NP_001290454 (OMIM: 615103) tubulin beta-6 chain i ( 104) 555 131.8 8.3e-31
NP_057346 (OMIM: 607345) tubulin epsilon chain [Ho ( 475) 524 125.4 3.3e-28
XP_016879942 (OMIM: 605785) PREDICTED: tubulin gam ( 298) 514 123.0 1.1e-27
XP_011522916 (OMIM: 605785) PREDICTED: tubulin gam ( 298) 514 123.0 1.1e-27
XP_016879944 (OMIM: 605785) PREDICTED: tubulin gam ( 274) 475 114.4 3.9e-25
>>NP_821133 (OMIM: 156610,191130,615771) tubulin beta ch (444 aa)
initn: 2987 init1: 2987 opt: 2987 Z-score: 3576.1 bits: 670.9 E(85289): 1.9e-192
Smith-Waterman score: 2987; 100.0% identity (100.0% similar) in 444 aa overlap (1-444:1-444)
10 20 30 40 50 60
pF1KB9 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 LKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 LKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
370 380 390 400 410 420
430 440
pF1KB9 EYQQYQDATAEEEEDFGEEAEEEA
::::::::::::::::::::::::
NP_821 EYQQYQDATAEEEEDFGEEAEEEA
430 440
>>NP_006079 (OMIM: 602660) tubulin beta-4B chain [Homo s (445 aa)
initn: 2929 init1: 2929 opt: 2929 Z-score: 3506.7 bits: 658.0 E(85289): 1.4e-188
Smith-Waterman score: 2929; 97.7% identity (99.5% similar) in 443 aa overlap (1-443:1-443)
10 20 30 40 50 60
pF1KB9 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV
::::::.:::::::::::::::::::::::::::::::::::::.::.::::::::::::
NP_006 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMM
::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::
NP_006 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 LKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
:::..:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
370 380 390 400 410 420
430 440
pF1KB9 EYQQYQDATAEEEEDFGEEAEEEA
::::::::::::: .: ::::::
NP_006 EYQQYQDATAEEEGEFEEEAEEEVA
430 440
>>NP_006078 (OMIM: 602662) tubulin beta-4A chain isoform (444 aa)
initn: 2909 init1: 2872 opt: 2893 Z-score: 3463.6 bits: 650.0 E(85289): 3.5e-186
Smith-Waterman score: 2893; 96.8% identity (99.3% similar) in 443 aa overlap (1-443:1-442)
10 20 30 40 50 60
pF1KB9 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV
::::::.:::::::::::::::::::::::::::::::::::::.::.:::::::::.::
NP_006 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
:::.::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
NP_006 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV
::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::
NP_006 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMM
::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::
NP_006 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
:::::::::::::::::::::::::::::::.::.:::::::::::::::::::::::::
NP_006 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 LKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
370 380 390 400 410 420
430 440
pF1KB9 EYQQYQDATAEEEEDFGEEAEEEA
:::::::::::: : : ::::::
NP_006 EYQQYQDATAEEGE-FEEEAEEEVA
430 440
>>NP_001276058 (OMIM: 602662) tubulin beta-4A chain isof (444 aa)
initn: 2909 init1: 2872 opt: 2893 Z-score: 3463.6 bits: 650.0 E(85289): 3.5e-186
Smith-Waterman score: 2893; 96.8% identity (99.3% similar) in 443 aa overlap (1-443:1-442)
10 20 30 40 50 60
pF1KB9 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV
::::::.:::::::::::::::::::::::::::::::::::::.::.:::::::::.::
NP_001 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
:::.::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
NP_001 PRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV
::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::
NP_001 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMM
::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::
NP_001 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
:::::::::::::::::::::::::::::::.::.:::::::::::::::::::::::::
NP_001 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 LKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
370 380 390 400 410 420
430 440
pF1KB9 EYQQYQDATAEEEEDFGEEAEEEA
:::::::::::: : : ::::::
NP_001 EYQQYQDATAEEGE-FEEEAEEEVA
430 440
>>NP_001276056 (OMIM: 602662) tubulin beta-4A chain isof (489 aa)
initn: 2909 init1: 2872 opt: 2893 Z-score: 3463.0 bits: 650.1 E(85289): 3.8e-186
Smith-Waterman score: 2893; 96.8% identity (99.3% similar) in 443 aa overlap (1-443:46-487)
10 20 30
pF1KB9 MREIVHIQAGQCGNQIGAKFWEVISDEHGI
::::::.:::::::::::::::::::::::
NP_001 AVSAASSTLAAAAAPRARATAAASTLSATAMREIVHLQAGQCGNQIGAKFWEVISDEHGI
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB9 DPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNF
::::::::::::::.::.:::::::::.:::::.::::::::::::::::::::::::::
NP_001 DPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNF
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB9 VFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTL
::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::
NP_001 VFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTL
140 150 160 170 180 190
160 170 180 190 200 210
pF1KB9 LISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI
::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LISKIREEFPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI
200 210 220 230 240 250
220 230 240 250 260 270
pF1KB9 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF
260 270 280 290 300 310
280 290 300 310 320 330
pF1KB9 APLTSRGSQQYRALTVPELTQQVFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQM
::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
NP_001 APLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQM
320 330 340 350 360 370
340 350 360 370 380 390
pF1KB9 LNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFR
:.::.:::::::::::::::::::::::::::::.:::::::::::::::::::::::::
NP_001 LSVQSKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFR
380 390 400 410 420 430
400 410 420 430 440
pF1KB9 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEEDFGEEAEEEA
:::::::::::::::::::::::::::::::::::::::::: : : ::::::
NP_001 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEGE-FEEEAEEEVA
440 450 460 470 480
>>NP_001276052 (OMIM: 602662) tubulin beta-4A chain isof (495 aa)
initn: 2909 init1: 2872 opt: 2893 Z-score: 3462.9 bits: 650.1 E(85289): 3.8e-186
Smith-Waterman score: 2893; 96.8% identity (99.3% similar) in 443 aa overlap (1-443:52-493)
10 20 30
pF1KB9 MREIVHIQAGQCGNQIGAKFWEVISDEHGI
::::::.:::::::::::::::::::::::
NP_001 AVSAASSTLAAAAAPRARATAAASTLSATAMREIVHLQAGQCGNQIGAKFWEVISDEHGI
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB9 DPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNF
::::::::::::::.::.:::::::::.:::::.::::::::::::::::::::::::::
NP_001 DPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNF
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB9 VFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTL
::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::
NP_001 VFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTL
150 160 170 180 190 200
160 170 180 190 200 210
pF1KB9 LISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI
::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LISKIREEFPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDI
210 220 230 240 250 260
220 230 240 250 260 270
pF1KB9 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGF
270 280 290 300 310 320
280 290 300 310 320 330
pF1KB9 APLTSRGSQQYRALTVPELTQQVFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQM
::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
NP_001 APLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQM
330 340 350 360 370 380
340 350 360 370 380 390
pF1KB9 LNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFR
:.::.:::::::::::::::::::::::::::::.:::::::::::::::::::::::::
NP_001 LSVQSKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFR
390 400 410 420 430 440
400 410 420 430 440
pF1KB9 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEEDFGEEAEEEA
:::::::::::::::::::::::::::::::::::::::::: : : ::::::
NP_001 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEGE-FEEEAEEEVA
450 460 470 480 490
>>NP_821080 (OMIM: 610031,612850) tubulin beta-2B chain (445 aa)
initn: 2882 init1: 2882 opt: 2885 Z-score: 3454.0 bits: 648.3 E(85289): 1.2e-185
Smith-Waterman score: 2885; 95.7% identity (99.3% similar) in 445 aa overlap (1-444:1-445)
10 20 30 40 50 60
pF1KB9 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV
::::::::::::::::::::::::::::::::::.:::::::::.::.::::::::.:::
NP_821 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV
:::.:::::::::::::::::::::::::::::::::::::::::::::.::::::::::
NP_821 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMM
::::::::::::::::::::::::::::::::::::::::::::::::::::.::.::::
NP_821 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
:::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::
NP_821 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 LKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
:::..:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_821 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
370 380 390 400 410 420
430 440
pF1KB9 EYQQYQDATAEEEEDFGEE-AEEEA
::::::::::.:. .: :: .:.::
NP_821 EYQQYQDATADEQGEFEEEEGEDEA
430 440
>>NP_001060 (OMIM: 615101,615763) tubulin beta-2A chain (445 aa)
initn: 2863 init1: 2863 opt: 2866 Z-score: 3431.3 bits: 644.1 E(85289): 2.2e-184
Smith-Waterman score: 2866; 95.3% identity (99.1% similar) in 445 aa overlap (1-444:1-445)
10 20 30 40 50 60
pF1KB9 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV
::::::::::::::::::::::::::::::::::.:::::::::.::.::::::.:.:::
NP_001 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEAAGNKYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV
:::.:::::::::::::::::::::::::::::::::::::::::::::.::::::::::
NP_001 RKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
:::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
NP_001 EPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMM
::::::::::::::::::::::::::::::::::::::::::::::::::::.::.::::
NP_001 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
:::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::
NP_001 AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 LKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
:::..:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
370 380 390 400 410 420
430 440
pF1KB9 EYQQYQDATAEEEEDFGEE-AEEEA
::::::::::.:. .: :: .:.::
NP_001 EYQQYQDATADEQGEFEEEEGEDEA
430 440
>>NP_001280141 (OMIM: 156610,191130,615771) tubulin beta (464 aa)
initn: 2862 init1: 2862 opt: 2862 Z-score: 3426.2 bits: 643.2 E(85289): 4.2e-184
Smith-Waterman score: 2862; 100.0% identity (100.0% similar) in 426 aa overlap (19-444:39-464)
10 20 30 40
pF1KB9 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRIS
::::::::::::::::::::::::::::::
NP_001 ANWDPSRSGVRDHPGQQSETLPHATFLQKIKFWEVISDEHGIDPTGTYHGDSDLQLDRIS
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB9 VYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTE
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB9 GAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFS
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB9 VVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHL
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB9 VSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPE
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB9 LTQQVFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LTQQVFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNN
310 320 330 340 350 360
350 360 370 380 390 400
pF1KB9 VKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEF
370 380 390 400 410 420
410 420 430 440
pF1KB9 TEAESNMNDLVSEYQQYQDATAEEEEDFGEEAEEEA
::::::::::::::::::::::::::::::::::::
NP_001 TEAESNMNDLVSEYQQYQDATAEEEEDFGEEAEEEA
430 440 450 460
>>NP_006077 (OMIM: 600638,602661,614039) tubulin beta-3 (450 aa)
initn: 2793 init1: 2793 opt: 2793 Z-score: 3343.8 bits: 627.9 E(85289): 1.6e-179
Smith-Waterman score: 2793; 92.6% identity (97.7% similar) in 444 aa overlap (1-444:1-444)
10 20 30 40 50 60
pF1KB9 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYV
::::::::::::::::::::::::::::::::.:.: :::::::.:::::::::.. :::
NP_006 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDLQLERISVYYNEASSHKYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV
::::::::::::::::::: ::..::::::.:::::::::::::::::::::::::::::
NP_006 PRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 RKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVV
::: :.::::::::::::::::::::::::::::.:::::::::::::::::::::::::
NP_006 RKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCL
::::::::.::::::::::::::::::::::::::::.:::::::::::::::::::: :
NP_006 EPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMM
::::::::::::::::::::::::::::::::::.:::::::::::::::::.:::::::
NP_006 RFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 AACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRG
::::::::::::::.:::::::::::::::: .:.:::::::::::::::.:::::::::
NP_006 AACDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 LKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
:::. :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
370 380 390 400 410 420
430 440
pF1KB9 EYQQYQDATAEEEEDFGEEAEEEA
::::::::::::: .. :. :::.
NP_006 EYQQYQDATAEEEGEMYEDDEEESEAQGPK
430 440 450
444 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:59:11 2016 done: Fri Nov 4 16:59:12 2016
Total Scan time: 8.390 Total Display time: 0.110
Function used was FASTA [36.3.4 Apr, 2011]