Result of FASTA (omim) for
pF1KB9025
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9025, 434 aa
1>>>pF1KB9025 434 - 434 aa - 434 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0778+/-0.00041; mu= 18.8806+/- 0.026
mean_var=64.8119+/-13.019, 0's: 0 Z-trim(110.9): 23 B-trim: 4 in 1/50
Lambda= 0.159311
statistics sampled from 19399 (19408) to 19399 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.593), E-opt: 0.2 (0.228), width: 16
Scan time: 8.600
The best scores are: opt bits E(85289)
NP_886552 (OMIM: 612907,616084,616959) CCA tRNA nu ( 434) 2887 672.6 5.4e-193
XP_011532079 (OMIM: 612907,616084,616959) PREDICTE ( 434) 2878 670.5 2.3e-192
XP_011532080 (OMIM: 612907,616084,616959) PREDICTE ( 434) 2878 670.5 2.3e-192
XP_011532078 (OMIM: 612907,616084,616959) PREDICTE ( 434) 2878 670.5 2.3e-192
NP_001289875 (OMIM: 612907,616084,616959) CCA tRNA ( 414) 1660 390.6 4.1e-108
>>NP_886552 (OMIM: 612907,616084,616959) CCA tRNA nucleo (434 aa)
initn: 2887 init1: 2887 opt: 2887 Z-score: 3585.9 bits: 672.6 E(85289): 5.4e-193
Smith-Waterman score: 2887; 100.0% identity (100.0% similar) in 434 aa overlap (1-434:1-434)
10 20 30 40 50 60
pF1KB9 MLRCLYHWHRPVLNRRWSRLCLLKQYLFTMKLQSPEFQSLFTEGLKSLTELFVKENHELR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_886 MLRCLYHWHRPVLNRRWSRLCLLKQYLFTMKLQSPEFQSLFTEGLKSLTELFVKENHELR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 IAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_886 IAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_886 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_886 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 ELKKILVGNHVNHLIHLIYDLDVAPYIGLPANASLEEFDKVSKNVDGFSPKPVTLLASLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_886 ELKKILVGNHVNHLIHLIYDLDVAPYIGLPANASLEEFDKVSKNVDGFSPKPVTLLASLF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 KVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPDATT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_886 KVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPDATT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 RVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_886 RVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGY
370 380 390 400 410 420
430
pF1KB9 QMEKDELLSYIKKT
::::::::::::::
NP_886 QMEKDELLSYIKKT
430
>>XP_011532079 (OMIM: 612907,616084,616959) PREDICTED: C (434 aa)
initn: 2878 init1: 2878 opt: 2878 Z-score: 3574.7 bits: 670.5 E(85289): 2.3e-192
Smith-Waterman score: 2878; 99.8% identity (99.8% similar) in 434 aa overlap (1-434:1-434)
10 20 30 40 50 60
pF1KB9 MLRCLYHWHRPVLNRRWSRLCLLKQYLFTMKLQSPEFQSLFTEGLKSLTELFVKENHELR
:::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::
XP_011 MLRCLYHWHRPVLNRRWSRLCLPKQYLFTMKLQSPEFQSLFTEGLKSLTELFVKENHELR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 IAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 ELKKILVGNHVNHLIHLIYDLDVAPYIGLPANASLEEFDKVSKNVDGFSPKPVTLLASLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ELKKILVGNHVNHLIHLIYDLDVAPYIGLPANASLEEFDKVSKNVDGFSPKPVTLLASLF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 KVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPDATT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPDATT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 RVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGY
370 380 390 400 410 420
430
pF1KB9 QMEKDELLSYIKKT
::::::::::::::
XP_011 QMEKDELLSYIKKT
430
>>XP_011532080 (OMIM: 612907,616084,616959) PREDICTED: C (434 aa)
initn: 2878 init1: 2878 opt: 2878 Z-score: 3574.7 bits: 670.5 E(85289): 2.3e-192
Smith-Waterman score: 2878; 99.8% identity (99.8% similar) in 434 aa overlap (1-434:1-434)
10 20 30 40 50 60
pF1KB9 MLRCLYHWHRPVLNRRWSRLCLLKQYLFTMKLQSPEFQSLFTEGLKSLTELFVKENHELR
:::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::
XP_011 MLRCLYHWHRPVLNRRWSRLCLPKQYLFTMKLQSPEFQSLFTEGLKSLTELFVKENHELR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 IAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 ELKKILVGNHVNHLIHLIYDLDVAPYIGLPANASLEEFDKVSKNVDGFSPKPVTLLASLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ELKKILVGNHVNHLIHLIYDLDVAPYIGLPANASLEEFDKVSKNVDGFSPKPVTLLASLF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 KVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPDATT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPDATT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 RVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGY
370 380 390 400 410 420
430
pF1KB9 QMEKDELLSYIKKT
::::::::::::::
XP_011 QMEKDELLSYIKKT
430
>>XP_011532078 (OMIM: 612907,616084,616959) PREDICTED: C (434 aa)
initn: 2878 init1: 2878 opt: 2878 Z-score: 3574.7 bits: 670.5 E(85289): 2.3e-192
Smith-Waterman score: 2878; 99.8% identity (99.8% similar) in 434 aa overlap (1-434:1-434)
10 20 30 40 50 60
pF1KB9 MLRCLYHWHRPVLNRRWSRLCLLKQYLFTMKLQSPEFQSLFTEGLKSLTELFVKENHELR
:::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::
XP_011 MLRCLYHWHRPVLNRRWSRLCLPKQYLFTMKLQSPEFQSLFTEGLKSLTELFVKENHELR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 IAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 ELKKILVGNHVNHLIHLIYDLDVAPYIGLPANASLEEFDKVSKNVDGFSPKPVTLLASLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ELKKILVGNHVNHLIHLIYDLDVAPYIGLPANASLEEFDKVSKNVDGFSPKPVTLLASLF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 KVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPDATT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPDATT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 RVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGY
370 380 390 400 410 420
430
pF1KB9 QMEKDELLSYIKKT
::::::::::::::
XP_011 QMEKDELLSYIKKT
430
>>NP_001289875 (OMIM: 612907,616084,616959) CCA tRNA nuc (414 aa)
initn: 1660 init1: 1660 opt: 1660 Z-score: 2062.0 bits: 390.6 E(85289): 4.1e-108
Smith-Waterman score: 2698; 95.4% identity (95.4% similar) in 434 aa overlap (1-434:1-414)
10 20 30 40 50 60
pF1KB9 MLRCLYHWHRPVLNRRWSRLCLLKQYLFTMKLQSPEFQSLFTEGLKSLTELFVKENHELR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLRCLYHWHRPVLNRRWSRLCLLKQYLFTMKLQSPEFQSLFTEGLKSLTELFVKENHELR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 IAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 ELKKILVGNHVNHLIHLIYDLDVAPYIGLPANASLEEFDKVSKNVDGFSPKPVTLLASLF
:::::::: ::::::::::::::::::::::::::::::::
NP_001 ELKKILVG--------------------LPANASLEEFDKVSKNVDGFSPKPVTLLASLF
250 260 270 280
310 320 330 340 350 360
pF1KB9 KVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPDATT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPDATT
290 300 310 320 330 340
370 380 390 400 410 420
pF1KB9 RVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGY
350 360 370 380 390 400
430
pF1KB9 QMEKDELLSYIKKT
::::::::::::::
NP_001 QMEKDELLSYIKKT
410
434 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 18:17:47 2016 done: Thu Nov 3 18:17:48 2016
Total Scan time: 8.600 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]