FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9025, 434 aa
  1>>>pF1KB9025 434 - 434 aa - 434 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5170+/-0.00097; mu= 16.0433+/- 0.058
 mean_var=62.2814+/-12.461, 0's: 0 Z-trim(104.0): 16  B-trim: 0 in 0/49
 Lambda= 0.162516
 statistics sampled from 7662 (7667) to 7662 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.602), E-opt: 0.2 (0.236), width:  16
 Scan time:  2.560

The best scores are:                                      opt bits E(32554)
CCDS2561.2 TRNT1 gene_id:51095|Hs108|chr3          ( 434) 2878 683.6  1e-196
CCDS77691.1 TRNT1 gene_id:51095|Hs108|chr3         ( 414) 1651 395.9 3.9e-110


>>CCDS2561.2 TRNT1 gene_id:51095|Hs108|chr3               (434 aa)
 initn: 2878 init1: 2878 opt: 2878  Z-score: 3645.3  bits: 683.6 E(32554): 1e-196
Smith-Waterman score: 2878; 99.8% identity (99.8% similar) in 434 aa overlap (1-434:1-434)

               10        20        30        40        50        60
pF1KB9 MLRCLYHWHRPVLNRRWSRLCLLKQYLFTMKLQSPEFQSLFTEGLKSLTELFVKENHELR
       :::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::
CCDS25 MLRCLYHWHRPVLNRRWSRLCLPKQYLFTMKLQSPEFQSLFTEGLKSLTELFVKENHELR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 IAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 IAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 ELKKILVGNHVNHLIHLIYDLDVAPYIGLPANASLEEFDKVSKNVDGFSPKPVTLLASLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 ELKKILVGNHVNHLIHLIYDLDVAPYIGLPANASLEEFDKVSKNVDGFSPKPVTLLASLF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 KVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPDATT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 KVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPDATT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 RVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 RVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGY
              370       380       390       400       410       420

              430    
pF1KB9 QMEKDELLSYIKKT
       ::::::::::::::
CCDS25 QMEKDELLSYIKKT
              430    

>>CCDS77691.1 TRNT1 gene_id:51095|Hs108|chr3              (414 aa)
 initn: 1651 init1: 1651 opt: 1651  Z-score: 2090.8  bits: 395.9 E(32554): 3.9e-110
Smith-Waterman score: 2689; 95.2% identity (95.2% similar) in 434 aa overlap (1-434:1-414)

               10        20        30        40        50        60
pF1KB9 MLRCLYHWHRPVLNRRWSRLCLLKQYLFTMKLQSPEFQSLFTEGLKSLTELFVKENHELR
       :::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::
CCDS77 MLRCLYHWHRPVLNRRWSRLCLPKQYLFTMKLQSPEFQSLFTEGLKSLTELFVKENHELR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 IAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 IAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 EITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 VRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 ELKKILVGNHVNHLIHLIYDLDVAPYIGLPANASLEEFDKVSKNVDGFSPKPVTLLASLF
       ::::::::                    ::::::::::::::::::::::::::::::::
CCDS77 ELKKILVG--------------------LPANASLEEFDKVSKNVDGFSPKPVTLLASLF
                                  250       260       270       280

              310       320       330       340       350       360
pF1KB9 KVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPDATT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 KVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPDATT
              290       300       310       320       330       340

              370       380       390       400       410       420
pF1KB9 RVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 RVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGY
              350       360       370       380       390       400

              430    
pF1KB9 QMEKDELLSYIKKT
       ::::::::::::::
CCDS77 QMEKDELLSYIKKT
              410    




434 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 18:17:47 2016 done: Thu Nov  3 18:17:47 2016
 Total Scan time:  2.560 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]