FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9016, 261 aa
  1>>>pF1KB9016 261 - 261 aa - 261 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.6007+/-0.00111; mu= -4.3176+/- 0.068
 mean_var=493.6499+/-100.811, 0's: 0 Z-trim(116.6): 23  B-trim: 176 in 1/53
 Lambda= 0.057725
 statistics sampled from 17229 (17246) to 17229 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.799), E-opt: 0.2 (0.53), width:  16
 Scan time:  2.580

The best scores are:                                      opt bits E(32554)
CCDS11731.1 WBP2 gene_id:23558|Hs108|chr17         ( 261) 1859 168.1 5.6e-42
CCDS82206.1 WBP2 gene_id:23558|Hs108|chr17         ( 216)  971 94.0 9.2e-20


>>CCDS11731.1 WBP2 gene_id:23558|Hs108|chr17              (261 aa)
 initn: 1859 init1: 1859 opt: 1859  Z-score: 867.0  bits: 168.1 E(32554): 5.6e-42
Smith-Waterman score: 1859; 100.0% identity (100.0% similar) in 261 aa overlap (1-261:1-261)

               10        20        30        40        50        60
pF1KB9 MALNKNHSEGGGVIVNNTESILMSYDHVELTFNDMKNVPEAFKGTKKGTVYLTPYRVIFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MALNKNHSEGGGVIVNNTESILMSYDHVELTFNDMKNVPEAFKGTKKGTVYLTPYRVIFL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 SKGKDAMQSFMMPFYLMKDCEIKQPVFGANYIKGTVKAEAGGGWEGSASYKLTFTAGGAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SKGKDAMQSFMMPFYLMKDCEIKQPVFGANYIKGTVKAEAGGGWEGSASYKLTFTAGGAI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 EFGQRMLQVASQASRGEVPSGAYGYSYMPSGAYVYPPPVANGMYPCPPGYPYPPPPPEFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EFGQRMLQVASQASRGEVPSGAYGYSYMPSGAYVYPPPVANGMYPCPPGYPYPPPPPEFY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 PGPPMMDGAMGYVQPPPPPYPGPMEPPVSGPDVPSTPAAEAKAAEAAASAYYNPGNPHNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PGPPMMDGAMGYVQPPPPPYPGPMEPPVSGPDVPSTPAAEAKAAEAAASAYYNPGNPHNV
              190       200       210       220       230       240

              250       260 
pF1KB9 YMPTSQPPPPPYYPPEDKKTQ
       :::::::::::::::::::::
CCDS11 YMPTSQPPPPPYYPPEDKKTQ
              250       260 

>>CCDS82206.1 WBP2 gene_id:23558|Hs108|chr17              (216 aa)
 initn: 1066 init1: 883 opt: 971  Z-score: 468.3  bits: 94.0 E(32554): 9.2e-20
Smith-Waterman score: 1405; 82.8% identity (82.8% similar) in 261 aa overlap (1-261:1-216)

               10        20        30        40        50        60
pF1KB9 MALNKNHSEGGGVIVNNTESILMSYDHVELTFNDMKNVPEAFKGTKKGTVYLTPYRVIFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MALNKNHSEGGGVIVNNTESILMSYDHVELTFNDMKNVPEAFKGTKKGTVYLTPYRVIFL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 SKGKDAMQSFMMPFYLMKDCEIKQPVFGANYIKGTVKAEAGGGWEGSASYKLTFTAGGAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SKGKDAMQSFMMPFYLMKDCEIKQPVFGANYIKGTVKAEAGGGWEGSASYKLTFTAGGAI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 EFGQRMLQVASQASRGEVPSGAYGYSYMPSGAYVYPPPVANGMYPCPPGYPYPPPPPEFY
       ::::::::::::                                             :::
CCDS82 EFGQRMLQVASQ---------------------------------------------EFY
              130                                                  

              190       200       210       220       230       240
pF1KB9 PGPPMMDGAMGYVQPPPPPYPGPMEPPVSGPDVPSTPAAEAKAAEAAASAYYNPGNPHNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PGPPMMDGAMGYVQPPPPPYPGPMEPPVSGPDVPSTPAAEAKAAEAAASAYYNPGNPHNV
         140       150       160       170       180       190     

              250       260 
pF1KB9 YMPTSQPPPPPYYPPEDKKTQ
       :::::::::::::::::::::
CCDS82 YMPTSQPPPPPYYPPEDKKTQ
         200       210      




261 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:58:31 2016 done: Fri Nov  4 16:58:32 2016
 Total Scan time:  2.580 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]