FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8994, 329 aa
  1>>>pF1KB8994 329 - 329 aa - 329 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0414+/-0.000688; mu= 18.6088+/- 0.042
 mean_var=100.5185+/-26.350, 0's: 0 Z-trim(111.8): 71  B-trim: 1489 in 2/48
 Lambda= 0.127924
 statistics sampled from 12597 (12700) to 12597 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.743), E-opt: 0.2 (0.39), width:  16
 Scan time:  2.400

The best scores are:                                      opt bits E(32554)
CCDS46515.1 GPBAR1 gene_id:151306|Hs108|chr2       ( 330) 2204 416.8 1.2e-116


>>CCDS46515.1 GPBAR1 gene_id:151306|Hs108|chr2            (330 aa)
 initn: 2202 init1: 1774 opt: 2204  Z-score: 2207.9  bits: 416.8 E(32554): 1.2e-116
Smith-Waterman score: 2204; 99.7% identity (99.7% similar) in 330 aa overlap (1-329:1-330)

               10        20        30        40        50        60
pF1KB8 MTPNSTGEVPSPIPKGALGLSLALASLIITANLLLALGIAWDRRLRSPPAGCFFLSLLLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MTPNSTGEVPSPIPKGALGLSLALASLIITANLLLALGIAWDRRLRSPPAGCFFLSLLLA
               10        20        30        40        50        60

                70        80        90       100       110         
pF1KB8 GLLTGLALP-LPGLWNQSRRGYWSCLLVYLAPNFSFLSLLANLLLVHGERYMAVLRPLQP
       ::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GLLTGLALPTLPGLWNQSRRGYWSCLLVYLAPNFSFLSLLANLLLVHGERYMAVLRPLQP
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB8 PGSIRLALLLTWAGPLLFASLPALGWNHWTPGANCSSQAIFPAPYLYLEVYGLLLPAVGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PGSIRLALLLTWAGPLLFASLPALGWNHWTPGANCSSQAIFPAPYLYLEVYGLLLPAVGA
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KB8 AAFLSVRVLATAHRQLQDICRLERAVCRDEPSALARALTWRQARAQAGAMLLFGLCWGPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AAFLSVRVLATAHRQLQDICRLERAVCRDEPSALARALTWRQARAQAGAMLLFGLCWGPY
              190       200       210       220       230       240

     240       250       260       270       280       290         
pF1KB8 VATLLLSVLAYEQRPPLGPGTLLSLLSLGSASAAAVPVAMGLGDQRYTAPWRAAAQRCLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VATLLLSVLAYEQRPPLGPGTLLSLLSLGSASAAAVPVAMGLGDQRYTAPWRAAAQRCLQ
              250       260       270       280       290       300

     300       310       320         
pF1KB8 GLWGRASRDSPGPSIAYHPSSQSSVDLDLN
       ::::::::::::::::::::::::::::::
CCDS46 GLWGRASRDSPGPSIAYHPSSQSSVDLDLN
              310       320       330




329 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:55:29 2016 done: Fri Nov  4 16:55:29 2016
 Total Scan time:  2.400 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]