Result of FASTA (ccds) for
pF1KB8992
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8992, 201 aa
1>>>pF1KB8992 201 - 201 aa - 201 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1698+/-0.000981; mu= 14.6920+/- 0.060
mean_var=81.7325+/-17.082, 0's: 0 Z-trim(106.0): 171 B-trim: 298 in 1/50
Lambda= 0.141866
statistics sampled from 8551 (8747) to 8551 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.269), width: 16
Scan time: 1.720
The best scores are: opt bits E(32554)
CCDS63169.1 ARL4C gene_id:10123|Hs108|chr2 ( 201) 1307 276.9 5.7e-75
CCDS2512.1 ARL4C gene_id:10123|Hs108|chr2 ( 192) 1245 264.2 3.7e-71
CCDS5359.1 ARL4A gene_id:10124|Hs108|chr7 ( 200) 921 197.9 3.5e-51
CCDS11463.1 ARL4D gene_id:379|Hs108|chr17 ( 201) 770 167.0 7e-42
CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 ( 175) 527 117.2 5.9e-27
CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 ( 181) 525 116.8 8.1e-27
CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 ( 181) 523 116.4 1.1e-26
CCDS34745.1 ARF5 gene_id:381|Hs108|chr7 ( 180) 519 115.6 1.9e-26
CCDS3192.1 ARL14 gene_id:80117|Hs108|chr3 ( 192) 516 115.0 3e-26
CCDS2884.1 ARF4 gene_id:378|Hs108|chr3 ( 180) 503 112.3 1.8e-25
CCDS9419.1 ARL11 gene_id:115761|Hs108|chr13 ( 196) 454 102.3 2e-22
CCDS3987.1 TRIM23 gene_id:373|Hs108|chr5 ( 574) 452 102.3 5.9e-22
CCDS44958.1 ARL1 gene_id:400|Hs108|chr12 ( 181) 424 96.2 1.3e-20
CCDS7131.1 ARL5B gene_id:221079|Hs108|chr10 ( 179) 422 95.7 1.8e-20
CCDS7538.1 ARL3 gene_id:403|Hs108|chr10 ( 182) 415 94.3 4.8e-20
CCDS2195.1 ARL5A gene_id:26225|Hs108|chr2 ( 179) 413 93.9 6.4e-20
CCDS43322.1 TRIM23 gene_id:373|Hs108|chr5 ( 569) 417 95.2 8.4e-20
CCDS3986.1 TRIM23 gene_id:373|Hs108|chr5 ( 546) 406 92.9 3.9e-19
CCDS8088.1 ARL2 gene_id:402|Hs108|chr11 ( 184) 387 88.6 2.6e-18
CCDS45664.1 ARL5C gene_id:390790|Hs108|chr17 ( 179) 348 80.6 6.4e-16
CCDS1421.1 ARL8A gene_id:127829|Hs108|chr1 ( 186) 331 77.1 7.4e-15
CCDS46425.1 ARL5A gene_id:26225|Hs108|chr2 ( 142) 329 76.6 8e-15
CCDS2566.1 ARL8B gene_id:55207|Hs108|chr3 ( 186) 328 76.5 1.1e-14
CCDS2928.1 ARL6 gene_id:84100|Hs108|chr3 ( 186) 323 75.5 2.3e-14
CCDS13533.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 201) 322 75.3 2.8e-14
CCDS46630.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 173) 295 69.7 1.2e-12
CCDS2925.1 ARL13B gene_id:200894|Hs108|chr3 ( 428) 299 70.9 1.3e-12
CCDS73510.1 ARL1 gene_id:400|Hs108|chr12 ( 135) 288 68.2 2.6e-12
CCDS55770.1 ARL2 gene_id:402|Hs108|chr11 ( 157) 277 66.0 1.4e-11
CCDS68172.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 154) 274 65.4 2.1e-11
CCDS4400.1 ARL10 gene_id:285598|Hs108|chr5 ( 244) 270 64.7 5.2e-11
CCDS73004.1 ARL8A gene_id:127829|Hs108|chr1 ( 147) 267 63.9 5.4e-11
>>CCDS63169.1 ARL4C gene_id:10123|Hs108|chr2 (201 aa)
initn: 1307 init1: 1307 opt: 1307 Z-score: 1459.4 bits: 276.9 E(32554): 5.7e-75
Smith-Waterman score: 1307; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201)
10 20 30 40 50 60
pF1KB8 MGNISSNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSNGTAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MGNISSNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSNGTAK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 GISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 GISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 PLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLYEMIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 PLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLYEMIL
130 140 150 160 170 180
190 200
pF1KB8 KRRKSLKQKKKRTGDLRSCEV
:::::::::::::::::::::
CCDS63 KRRKSLKQKKKRTGDLRSCEV
190 200
>>CCDS2512.1 ARL4C gene_id:10123|Hs108|chr2 (192 aa)
initn: 1245 init1: 1245 opt: 1245 Z-score: 1391.1 bits: 264.2 E(32554): 3.7e-71
Smith-Waterman score: 1245; 100.0% identity (100.0% similar) in 192 aa overlap (1-192:1-192)
10 20 30 40 50 60
pF1KB8 MGNISSNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSNGTAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 MGNISSNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSNGTAK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 GISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 GISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 PLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLYEMIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 PLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLYEMIL
130 140 150 160 170 180
190 200
pF1KB8 KRRKSLKQKKKRTGDLRSCEV
::::::::::::
CCDS25 KRRKSLKQKKKR
190
>>CCDS5359.1 ARL4A gene_id:10124|Hs108|chr7 (200 aa)
initn: 918 init1: 918 opt: 921 Z-score: 1032.4 bits: 197.9 E(32554): 3.5e-51
Smith-Waterman score: 921; 69.5% identity (91.6% similar) in 190 aa overlap (3-192:10-199)
10 20 30 40 50
pF1KB8 MGNISSNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIK
.: ::. .:::.:::.:::: ::::::::::.:::::::::: ::::::::
CCDS53 MGNGLSDQTSILSNLPSFQSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 LSNGTAKGISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTK
.. :..: .. ::::::::::::::::::.::::::..:::::::.:.:::::::::.:.
CCDS53 VTLGNSKTVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITR
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 FAENQGTPLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMD
..::::.:.:..:::::: .:: ..:::: ::. :: .: .:.::.:::::.:: ::..
CCDS53 ISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLE
130 140 150 160 170 180
180 190 200
pF1KB8 KLYEMILKRRKSLKQKKKRTGDLRSCEV
::..::.:::: :.:.::.
CCDS53 KLHDMIIKRRKMLRQQKKKR
190 200
>>CCDS11463.1 ARL4D gene_id:379|Hs108|chr17 (201 aa)
initn: 770 init1: 770 opt: 770 Z-score: 865.4 bits: 167.0 E(32554): 7e-42
Smith-Waterman score: 770; 59.0% identity (85.6% similar) in 188 aa overlap (5-192:13-200)
10 20 30 40 50
pF1KB8 MGNISSNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKI
:: . ::.::.:..::::::::..::::::.:::..::: :::::::
CCDS11 MGNHLTEMAPTASSFLPHFQALHVVVIGLDSAGKTSLLYRLKFKEFVQSVPTKGFNTEKI
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 KLSNGTAKGISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVT
.. : ..::. . :::::::::::::.::.: :::...:::.....::::::.:::...
CCDS11 RVPLGGSRGITFQVWDVGGQEKLRPLWRSYTRRTDGLVFVVDAAEAERLEEAKVELHRIS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 KFAENQGTPLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGM
. ..:::.:.::.::::: : .: .::.::.::..:: :: ::: :. : :: .:.
CCDS11 RASDNQGVPVLVLANKQDQPGALSAAEVEKRLAVRELAAATLTHVQGCSAVDGLGLQQGL
130 140 150 160 170 180
180 190 200
pF1KB8 DKLYEMILKRRKSLKQKKKRTGDLRSCEV
..::::::::.:. . :::
CCDS11 ERLYEMILKRKKAARGGKKRR
190 200
>>CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 (175 aa)
initn: 524 init1: 283 opt: 527 Z-score: 597.4 bits: 117.2 E(32554): 5.9e-27
Smith-Waterman score: 527; 45.7% identity (76.6% similar) in 175 aa overlap (1-175:1-169)
10 20 30 40 50 60
pF1KB8 MGNISSNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSNGTAK
::.. :.: . . ..:.:::::.:::::.::.::... :.:.::.:::.: . : :
CCDS96 MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETV-----TYK
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 GISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGT
... . ::::::.:.::::. : :.:.:.::: .: ::..::. :::.. . : . .
CCDS96 NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDA
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 PLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLYEMIL
.:..::::::: .. ::...:.: . : ...:::.:: :.:: ::. :
CCDS96 IILIFANKQDLPDAMKPHEIQEKLGLTR-IRDRNWYVQPSCATSGDGLYEGLTWLTSNYK
120 130 140 150 160 170
190 200
pF1KB8 KRRKSLKQKKKRTGDLRSCEV
CCDS96 S
>>CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 (181 aa)
initn: 538 init1: 292 opt: 525 Z-score: 595.0 bits: 116.8 E(32554): 8.1e-27
Smith-Waterman score: 525; 46.4% identity (76.0% similar) in 183 aa overlap (2-184:6-181)
10 20 30 40 50
pF1KB8 MGNISSNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSN
::. ... . . ..:.:.:::.:::::.::.::..:.:.:.::::::.: .. .:
CCDS87 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 GTAKGISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAE
:: ::::::.:.::::. : . :.:.:.:::: : .:..::. :: .. :
CCDS87 -----ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE
70 80 90 100 110
120 130 140 150 160 170
pF1KB8 NQGTPLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLY
. . :::.:::::::... .::: .:.:: : ....: .:: :.:: ::.: :
CCDS87 LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RHRNWYIQATCATSGDGLYEGLDWLA
120 130 140 150 160 170
180 190 200
pF1KB8 EMILKRRKSLKQKKKRTGDLRSCEV
.. :: .:
CCDS87 NQ-LKNKK
180
>>CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 (181 aa)
initn: 509 init1: 292 opt: 523 Z-score: 592.8 bits: 116.4 E(32554): 1.1e-26
Smith-Waterman score: 523; 46.0% identity (75.4% similar) in 187 aa overlap (1-183:1-181)
10 20 30 40 50
pF1KB8 MGNISSNI--SAF--QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSN
:::: .:. . : . ..:.:.:::.:::::.::.::..:.:.:.::::::.: .. .:
CCDS15 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 GTAKGISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAE
:: ::::::.:.::::. : . :.:.:.:::: : .:..::. :: .. :
CCDS15 -----ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE
70 80 90 100 110
120 130 140 150 160 170
pF1KB8 NQGTPLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLY
. . :::.:::::::... .::: .:.:: : ....: .:: :.:: ::.: :
CCDS15 LRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RHRNWYIQATCATSGDGLYEGLDWLS
120 130 140 150 160 170
180 190 200
pF1KB8 EMILKRRKSLKQKKKRTGDLRSCEV
... ...
CCDS15 NQLRNQK
180
>>CCDS34745.1 ARF5 gene_id:381|Hs108|chr7 (180 aa)
initn: 506 init1: 289 opt: 519 Z-score: 588.4 bits: 115.6 E(32554): 1.9e-26
Smith-Waterman score: 519; 46.3% identity (76.8% similar) in 177 aa overlap (6-182:10-180)
10 20 30 40 50
pF1KB8 MGNISSNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSN
: : . ....:.:.:::.:::::.::.::..:.:.:.::::::.: .. .:
CCDS34 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 GTAKGISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAE
: ::::::.:.::::. : . :.:.:.:::: : .:..:. ::.:. . :
CCDS34 -----ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDE
70 80 90 100 110
120 130 140 150 160 170
pF1KB8 NQGTPLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLY
. . :::.:::::.:...::.:. .:.:..: . :..:: .:: : :: .:.: :
CCDS34 LRDAVLLVFANKQDMPNAMPVSELTDKLGLQHL-RSRTWYVQATCATQGTGLYDGLDWLS
120 130 140 150 160 170
180 190 200
pF1KB8 EMILKRRKSLKQKKKRTGDLRSCEV
. . ::
CCDS34 HELSKR
180
>>CCDS3192.1 ARL14 gene_id:80117|Hs108|chr3 (192 aa)
initn: 516 init1: 353 opt: 516 Z-score: 584.7 bits: 115.0 E(32554): 3e-26
Smith-Waterman score: 516; 41.1% identity (76.8% similar) in 185 aa overlap (1-185:1-181)
10 20 30 40 50 60
pF1KB8 MGNISSNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSNGTAK
::...:. .. ....::::::::.:.::.::. . ..:.::::::.: :.: .
CCDS31 MGSLGSKNPQTKQAQVLLLGLDSAGKSTLLYKLKLAKDITTIPTIGFNVEMIELE----R
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 GISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGT
..: ::::::::.: .: : . :::..:::::.: .::::.. ..... : . ...
CCDS31 NLSLTVWDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQRQFEHILKNEHIKNV
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 PLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLYEMIL
:....:::::.: .: . .: ... ...: ...::: ::. ::::..:. :: ..
CCDS31 PVVLLANKQDMPGALTAEDITRMFKVKKLCSDRNWYVQPCCALTGEGLAQGFRKLTGFVK
120 130 140 150 160 170
190 200
pF1KB8 KRRKSLKQKKKRTGDLRSCEV
.. ::
CCDS31 SHMKSRGDTLAFFKQN
180 190
>>CCDS2884.1 ARF4 gene_id:378|Hs108|chr3 (180 aa)
initn: 492 init1: 271 opt: 503 Z-score: 570.7 bits: 112.3 E(32554): 1.8e-25
Smith-Waterman score: 503; 45.7% identity (74.2% similar) in 186 aa overlap (1-182:1-180)
10 20 30 40 50
pF1KB8 MG-NISSNISAF---QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSN
:: .::: .: . ....:.:.:::.:::::.::.::..:.:.:.::::::.: .. .:
CCDS28 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 GTAKGISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAE
: ::::::...::::: : . :.:.:.:::: : .:..:. ::.:. :
CCDS28 -----ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDE
70 80 90 100 110
120 130 140 150 160 170
pF1KB8 NQGTPLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLY
. . ::..:::::::... ..:. .:.:. : :..:: .:: : :: ::.: :
CCDS28 LRDAVLLLFANKQDLPNAMAISEMTDKLGLQSL-RNRTWYVQATCATQGTGLYEGLDWLS
120 130 140 150 160 170
180 190 200
pF1KB8 EMILKRRKSLKQKKKRTGDLRSCEV
. . ::
CCDS28 NELSKR
180
201 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:53:45 2016 done: Fri Nov 4 16:53:45 2016
Total Scan time: 1.720 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]