FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8989, 390 aa
  1>>>pF1KB8989 390 - 390 aa - 390 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6203+/-0.00106; mu= 8.1276+/- 0.064
 mean_var=173.0493+/-33.983, 0's: 0 Z-trim(109.8): 15  B-trim: 98 in 1/50
 Lambda= 0.097497
 statistics sampled from 11173 (11179) to 11173 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.687), E-opt: 0.2 (0.343), width:  16
 Scan time:  3.140

The best scores are:                                      opt bits E(32554)
CCDS11425.1 PTRF gene_id:284119|Hs108|chr17        ( 390) 2422 352.7 3.3e-97
CCDS2313.1 SDPR gene_id:8436|Hs108|chr2            ( 425)  647 103.1   5e-22
CCDS35083.1 MURC gene_id:347273|Hs108|chr9         ( 364)  391 67.0 3.1e-11


>>CCDS11425.1 PTRF gene_id:284119|Hs108|chr17             (390 aa)
 initn: 2422 init1: 2422 opt: 2422  Z-score: 1858.7  bits: 352.7 E(32554): 3.3e-97
Smith-Waterman score: 2422; 100.0% identity (100.0% similar) in 390 aa overlap (1-390:1-390)

               10        20        30        40        50        60
pF1KB8 MEDPTLYIVERPLPGYPDAEAPEPSSAGAQAAEEPSGAGSEELIKSDQVNGVLVLSLLDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MEDPTLYIVERPLPGYPDAEAPEPSSAGAQAAEEPSGAGSEELIKSDQVNGVLVLSLLDK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 IIGAVDQIQLTQAQLEERQAEMEGAVQSIQGELSKLGKAHATTSNTVSKLLEKVRKVSVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IIGAVDQIQLTQAQLEERQAEMEGAVQSIQGELSKLGKAHATTSNTVSKLLEKVRKVSVN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 VKTVRGSLERQAGQIKKLEVNEAELLRRRNFKVMIYQDEVKLPAKLSISKSLKESEALPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VKTVRGSLERQAGQIKKLEVNEAELLRRRNFKVMIYQDEVKLPAKLSISKSLKESEALPE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 KEGEELGEGERPEEDAAALELSSDEAVEVEEVIEESRAERIKRSGLRRVDDFKKAFSKEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KEGEELGEGERPEEDAAALELSSDEAVEVEEVIEESRAERIKRSGLRRVDDFKKAFSKEK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 MEKTKVRTRENLEKTRLKTKENLEKTRHTLEKRMNKLGTRLVPAERREKLKTSRDKLRKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MEKTKVRTRENLEKTRLKTKENLEKTRHTLEKRMNKLGTRLVPAERREKLKTSRDKLRKS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 FTPDHVVYARSKTAVYKVPPFTFHVKKIREGQVEVLKATEMVEVGADDDEGGAERGEAGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FTPDHVVYARSKTAVYKVPPFTFHVKKIREGQVEVLKATEMVEVGADDDEGGAERGEAGD
              310       320       330       340       350       360

              370       380       390
pF1KB8 LRRGSSPDVHALLEITEESDAVLVDKSDSD
       ::::::::::::::::::::::::::::::
CCDS11 LRRGSSPDVHALLEITEESDAVLVDKSDSD
              370       380       390

>>CCDS2313.1 SDPR gene_id:8436|Hs108|chr2                 (425 aa)
 initn: 680 init1: 418 opt: 647  Z-score: 508.9  bits: 103.1 E(32554): 5e-22
Smith-Waterman score: 703; 38.5% identity (67.5% similar) in 382 aa overlap (14-379:14-355)

               10        20        30            40         50     
pF1KB8 MEDPTLYIVERPLPGYPDAEAPEPSSAGAQAAEEPSGA----GSEELIKSD-QVNGVLVL
                    ::  : .  .::: . . .  :: .    ..:: :... :::.: ::
CCDS23 MGEDAAQAEKFQHPG-SDMRQEKPSSPSPMPSSTPSPSLNLGNTEEAIRDNSQVNAVTVL
               10         20        30        40        50         

          60        70        80        90       100       110     
pF1KB8 SLLDKIIGAVDQIQLTQAQLEERQAEMEGAVQSIQGELSKLGKAHATTSNTVSKLLEKVR
       .::::... .: .: .: ..:.::  .::.:..::..:.::.: .:.::::::::::: :
CCDS23 TLLDKLVNMLDAVQENQHKMEQRQISLEGSVKGIQNDLTKLSKYQASTSNTVSKLLEKSR
      60        70        80        90       100       110         

         120       130       140       150       160       170     
pF1KB8 KVSVNVKTVRGSLERQAGQIKKLEVNEAELLRRRNFKVMIYQDEVKLPAKLSISKSLKES
       :::.....:.  ..:: .:.:.:: :.:.:::: .:::.:.:.: ..::.. ... .  :
CCDS23 KVSAHTRAVKERMDRQCAQVKRLENNHAQLLRRNHFKVLIFQEENEIPASVFVKQPV--S
     120       130       140       150       160       170         

         180       190       200                210       220      
pF1KB8 EALPEKEGEELGEGERPEEDAAALELSSD-------EAVE--VEEVIEESRAERIKRSGL
        :.  :: :   :..  ::   ...::::       ::.:  .:: .::::::.::::.:
CCDS23 GAVEGKE-ELPDENKSLEETLHTVDLSSDDDLPHDEEALEDSAEEKVEESRAEKIKRSSL
       180        190       200       210       220       230      

        230       240       250       260       270       280      
pF1KB8 RRVDDFKKAFSKEKMEKTKVRTRENLEKTRLKTKENLEKTRHTLEKRMNKLGTRLVPAER
       ..::..:::::                             :...::.::::::..: .::
CCDS23 KKVDSLKKAFS-----------------------------RQNIEKKMNKLGTKIVSVER
        240                                    250       260       

        290       300       310       320       330       340      
pF1KB8 REKLKTSRDKLRKSFTPDHVVYARSKTAVYKVPPFTFHVKKIREGQVEVLKATEMVEVGA
       :::.:       ::.: .:   . .:.. .:: :.::  ::.:::. .. . :.  .. .
CCDS23 REKIK-------KSLTSNHQKISSGKSSPFKVSPLTFGRKKVREGESHAENETKSEDLPS
       270              280       290       300       310       320

        350       360       370         380       390              
pF1KB8 DDDEGGAERGEAGDLRRGSSPDVHALLE--ITEESDAVLVDKSDSD              
       ...  . .. :.    .. .  . ::.:  :.::.                         
CCDS23 SEQMPNDQEEESFAEGHSEASLASALVEGEIAEEAAEKATSRGSNSGMDSNIDLTIVEDE
              330       340       350       360       370       380

CCDS23 EEESVALEQAQKVRYEGSYALTSEEAERSDGDPVQPAVLQVHQTS
              390       400       410       420     

>>CCDS35083.1 MURC gene_id:347273|Hs108|chr9              (364 aa)
 initn: 665 init1: 357 opt: 391  Z-score: 315.2  bits: 67.0 E(32554): 3.1e-11
Smith-Waterman score: 562; 33.8% identity (68.2% similar) in 305 aa overlap (47-347:26-295)

         20        30        40        50        60        70      
pF1KB8 PDAEAPEPSSAGAQAAEEPSGAGSEELIKSDQVNGVLVLSLLDKIIGAVDQIQLTQAQLE
                                     ::  .. ....:::. . ::..: .: ..:
CCDS35      MEHNGSASNADKIHQNRLSSVTEDEDQDAALTIVTVLDKVASIVDSVQASQKRIE
                    10        20        30        40        50     

         80        90       100       110       120       130      
pF1KB8 ERQAEMEGAVQSIQGELSKLGKAHATTSNTVSKLLEKVRKVSVNVKTVRGSLERQAGQIK
       ::. :::.:..:.: .: ::...:..:.. ..::.::.::::...: :.. .:.:  ..:
CCDS35 ERHREMENAIKSVQIDLLKLSQSHSNTGHIINKLFEKTRKVSAHIKDVKARVEKQQIHVK
          60        70        80        90       100       110     

        140       150       160       170       180       190      
pF1KB8 KLEVNEAELLRRRNFKVMIYQDEVKLPAKLSISKSLKESEALPEKEGEELGEGERPEEDA
       :.::.. :.... .:.:.:.:.. . :..::. :.    . : :.. :.  .   :  : 
CCDS35 KVEVKQEEIMKKNKFRVVIFQEKFRCPTSLSVVKD----RNLTENQEEDDDDIFDPPVD-
         120       130       140       150           160       170 

        200       210       220       230       240       250      
pF1KB8 AALELSSDEAVEVEEVIEESRAERIKRSGLRRVDDFKKAFSKEKMEKTKVRTRENLEKTR
           :::::    :  .::::. :...:: ...:..:::::::                 
CCDS35 ----LSSDE----EYYVEESRSARLRKSGKEHIDNIKKAFSKE-----------------
                      180       190       200                      

        260       270       280       290       300       310      
pF1KB8 LKTKENLEKTRHTLEKRMNKLGTRLVPAERREKLKTSRDKLRKSFTPDHVVYARSKTAVY
            :..:::..:.:..:.. ::.:  ::::.:. : ..::.:    .    : : .. 
CCDS35 -----NMQKTRQNLDKKVNRIRTRIVTPERRERLRQSGERLRQSGERLRQSGERFKKSIS
              210       220       230       240       250       260

        320         330       340         350       360       370  
pF1KB8 KVPPF--TFHVKKIREGQVEVLKATEMV--EVGADDDEGGAERGEAGDLRRGSSPDVHAL
       .. :   .:.....:.:. ...   :    :.:.:                         
CCDS35 NAAPSKEAFKMRSLRKGKDRTVAEGEECAREMGVDIIARSESLGPISELYSDELSEPEHE
              270       280       290       300       310       320

            380       390                          
pF1KB8 LEITEESDAVLVDKSDSD                          
                                                   
CCDS35 AARPVYPPHEGREIPTPEPLKVTFKSQVKVEDDESLLLDLKHSS
              330       340       350       360    




390 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:52:34 2016 done: Fri Nov  4 16:52:34 2016
 Total Scan time:  3.140 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]