Result of FASTA (omim) for
pF1KB8986
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8986, 387 aa
1>>>pF1KB8986 387 - 387 aa - 387 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7932+/-0.000568; mu= 20.0645+/- 0.035
mean_var=128.7730+/-33.433, 0's: 0 Z-trim(108.0): 595 B-trim: 804 in 1/48
Lambda= 0.113022
statistics sampled from 15383 (16085) to 15383 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.525), E-opt: 0.2 (0.189), width: 16
Scan time: 7.330
The best scores are: opt bits E(85289)
NP_001164645 (OMIM: 601470,607339,609423,613784) C ( 387) 2538 426.3 5.8e-119
NP_001328 (OMIM: 601470,607339,609423,613784) CX3C ( 355) 2335 393.2 5.1e-109
NP_001164643 (OMIM: 601470,607339,609423,613784) C ( 355) 2335 393.2 5.1e-109
NP_001164642 (OMIM: 601470,607339,609423,613784) C ( 355) 2335 393.2 5.1e-109
XP_016861176 (OMIM: 604836) PREDICTED: C-C chemoki ( 360) 941 165.9 1.4e-40
NP_005499 (OMIM: 604836) C-C chemokine receptor ty ( 360) 941 165.9 1.4e-40
NP_005192 (OMIM: 601834) C-C chemokine receptor ty ( 355) 931 164.3 4.2e-40
XP_011532371 (OMIM: 601267) PREDICTED: C-C chemoki ( 360) 921 162.6 1.3e-39
NP_001116868 (OMIM: 601267) C-C chemokine receptor ( 360) 921 162.6 1.3e-39
NP_001286 (OMIM: 601159) C-C chemokine receptor ty ( 355) 920 162.5 1.5e-39
NP_001116513 (OMIM: 601267) C-C chemokine receptor ( 374) 912 161.2 3.7e-39
NP_001828 (OMIM: 601268) C-C chemokine receptor ty ( 355) 902 159.5 1.1e-38
XP_006713023 (OMIM: 601268) PREDICTED: C-C chemoki ( 355) 902 159.5 1.1e-38
NP_847899 (OMIM: 601268) C-C chemokine receptor ty ( 355) 902 159.5 1.1e-38
XP_011531637 (OMIM: 601268) PREDICTED: C-C chemoki ( 355) 902 159.5 1.1e-38
NP_001158152 (OMIM: 601268) C-C chemokine receptor ( 373) 902 159.6 1.1e-38
NP_847898 (OMIM: 601268) C-C chemokine receptor ty ( 376) 902 159.6 1.2e-38
XP_016861175 (OMIM: 601268) PREDICTED: C-C chemoki ( 410) 902 159.6 1.2e-38
XP_016861174 (OMIM: 601268) PREDICTED: C-C chemoki ( 410) 902 159.6 1.2e-38
NP_001093638 (OMIM: 601373,609532,610379,612522) C ( 352) 887 157.1 6.1e-38
NP_000570 (OMIM: 601373,609532,610379,612522) C-C ( 352) 887 157.1 6.1e-38
NP_001287 (OMIM: 602648) atypical chemokine recept ( 384) 728 131.2 4e-30
NP_003458 (OMIM: 162643,193670) C-X-C chemokine re ( 352) 723 130.3 6.8e-30
NP_001008540 (OMIM: 162643,193670) C-X-C chemokine ( 356) 723 130.3 6.8e-30
NP_004358 (OMIM: 601835) C-C chemokine receptor ty ( 374) 698 126.3 1.2e-28
NP_113597 (OMIM: 601835) C-C chemokine receptor ty ( 374) 698 126.3 1.2e-28
NP_005274 (OMIM: 600552) chemokine XC receptor 1 [ ( 333) 688 124.6 3.4e-28
XP_016861686 (OMIM: 600552) PREDICTED: chemokine X ( 333) 688 124.6 3.4e-28
XP_016861685 (OMIM: 600552) PREDICTED: chemokine X ( 333) 688 124.6 3.4e-28
XP_016861689 (OMIM: 600552) PREDICTED: chemokine X ( 333) 688 124.6 3.4e-28
XP_016861688 (OMIM: 600552) PREDICTED: chemokine X ( 333) 688 124.6 3.4e-28
NP_001019815 (OMIM: 600552) chemokine XC receptor ( 333) 688 124.6 3.4e-28
XP_016861687 (OMIM: 600552) PREDICTED: chemokine X ( 333) 688 124.6 3.4e-28
XP_016861690 (OMIM: 600552) PREDICTED: chemokine X ( 333) 688 124.6 3.4e-28
NP_848540 (OMIM: 606065) atypical chemokine recept ( 350) 682 123.6 7e-28
NP_057641 (OMIM: 606065) atypical chemokine recept ( 350) 682 123.6 7e-28
NP_001288646 (OMIM: 600242) C-C chemokine receptor ( 372) 657 119.6 1.2e-26
NP_001288647 (OMIM: 600242) C-C chemokine receptor ( 372) 657 119.6 1.2e-26
NP_001288645 (OMIM: 600242) C-C chemokine receptor ( 372) 657 119.6 1.2e-26
NP_001829 (OMIM: 600242) C-C chemokine receptor ty ( 378) 657 119.6 1.2e-26
NP_001548 (OMIM: 146928) C-X-C chemokine receptor ( 360) 631 115.3 2.3e-25
XP_016859480 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 631 115.3 2.3e-25
XP_016859479 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 631 115.3 2.3e-25
NP_001161770 (OMIM: 146928) C-X-C chemokine recept ( 360) 631 115.3 2.3e-25
XP_005246587 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 631 115.3 2.3e-25
XP_016859481 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 631 115.3 2.3e-25
NP_006632 (OMIM: 604738) C-C chemokine receptor ty ( 357) 630 115.2 2.5e-25
NP_001243298 (OMIM: 604738) C-C chemokine receptor ( 357) 630 115.2 2.5e-25
XP_011531614 (OMIM: 604738) PREDICTED: C-C chemoki ( 369) 630 115.2 2.6e-25
NP_112477 (OMIM: 604738) C-C chemokine receptor ty ( 369) 630 115.2 2.6e-25
>>NP_001164645 (OMIM: 601470,607339,609423,613784) CX3C (387 aa)
initn: 2538 init1: 2538 opt: 2538 Z-score: 2256.7 bits: 426.3 E(85289): 5.8e-119
Smith-Waterman score: 2538; 99.2% identity (99.7% similar) in 387 aa overlap (1-387:1-387)
10 20 30 40 50 60
pF1KB8 MREPLEALKLADLDFRKSSLASGWRMASGAFTMDQFPESVTENFEYDDLAEACYIGDIVV
:::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MREPLEAFKLADLDFRKSSLASGWRMASGAFTMDQFPESVTENFEYDDLAEACYIGDIVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 FGTVFLSIFYSVIFAIGLVGNLLVVFALTNSKKPKSVTDIYLLNLALSDLLFVATLPFWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FGTVFLSIFYSVIFAIGLVGNLLVVFALTNSKKPKSVTDIYLLNLALSDLLFVATLPFWT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 HYLINEKGLHNAMCKFTTAFFFIGFFGSIFFITVISIDRYLAIVLAANSMNNRTVQHGVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HYLINEKGLHNAMCKFTTAFFFIGFFGSIFFITVISIDRYLAIVLAANSMNNRTVQHGVT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 ISLGVWAAAILVAAPQFMFTKQKENECLGDYPEVLQEIWPVLRNVETNFLGFLLPLLIMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ISLGVWAAAILVAAPQFMFTKQKENECLGDYPEVLQEIWPVLRNVETNFLGFLLPLLIMS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 YCYFRIIQTLFSCKNHKKAKAIKLILLVVIVFFLFWTPYNIMIFLETLKLYDFFPSCDMR
::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
NP_001 YCYFRIIQTLFSCKNHKKAKAIKLILLVVIVFFLFWTPYNVMIFLETLKLYDFFPSCDMR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 KDLRLALSVTEMVAFSHCCLNPLIYAFAGEKFRRYLYHLYGKCLAVLCGRSVHVDFSSSE
::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KDLRLALSVTETVAFSHCCLNPLIYAFAGEKFRRYLYHLYGKCLAVLCGRSVHVDFSSSE
310 320 330 340 350 360
370 380
pF1KB8 SQRSRHGSVLSSNFTYHTSDGDALLLL
:::::::::::::::::::::::::::
NP_001 SQRSRHGSVLSSNFTYHTSDGDALLLL
370 380
>>NP_001328 (OMIM: 601470,607339,609423,613784) CX3C che (355 aa)
initn: 2335 init1: 2335 opt: 2335 Z-score: 2078.2 bits: 393.2 E(85289): 5.1e-109
Smith-Waterman score: 2335; 99.4% identity (99.7% similar) in 355 aa overlap (33-387:1-355)
10 20 30 40 50 60
pF1KB8 EPLEALKLADLDFRKSSLASGWRMASGAFTMDQFPESVTENFEYDDLAEACYIGDIVVFG
::::::::::::::::::::::::::::::
NP_001 MDQFPESVTENFEYDDLAEACYIGDIVVFG
10 20 30
70 80 90 100 110 120
pF1KB8 TVFLSIFYSVIFAIGLVGNLLVVFALTNSKKPKSVTDIYLLNLALSDLLFVATLPFWTHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVFLSIFYSVIFAIGLVGNLLVVFALTNSKKPKSVTDIYLLNLALSDLLFVATLPFWTHY
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 LINEKGLHNAMCKFTTAFFFIGFFGSIFFITVISIDRYLAIVLAANSMNNRTVQHGVTIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LINEKGLHNAMCKFTTAFFFIGFFGSIFFITVISIDRYLAIVLAANSMNNRTVQHGVTIS
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 LGVWAAAILVAAPQFMFTKQKENECLGDYPEVLQEIWPVLRNVETNFLGFLLPLLIMSYC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGVWAAAILVAAPQFMFTKQKENECLGDYPEVLQEIWPVLRNVETNFLGFLLPLLIMSYC
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB8 YFRIIQTLFSCKNHKKAKAIKLILLVVIVFFLFWTPYNIMIFLETLKLYDFFPSCDMRKD
::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::
NP_001 YFRIIQTLFSCKNHKKAKAIKLILLVVIVFFLFWTPYNVMIFLETLKLYDFFPSCDMRKD
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB8 LRLALSVTEMVAFSHCCLNPLIYAFAGEKFRRYLYHLYGKCLAVLCGRSVHVDFSSSESQ
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRLALSVTETVAFSHCCLNPLIYAFAGEKFRRYLYHLYGKCLAVLCGRSVHVDFSSSESQ
280 290 300 310 320 330
370 380
pF1KB8 RSRHGSVLSSNFTYHTSDGDALLLL
:::::::::::::::::::::::::
NP_001 RSRHGSVLSSNFTYHTSDGDALLLL
340 350
>>NP_001164643 (OMIM: 601470,607339,609423,613784) CX3C (355 aa)
initn: 2335 init1: 2335 opt: 2335 Z-score: 2078.2 bits: 393.2 E(85289): 5.1e-109
Smith-Waterman score: 2335; 99.4% identity (99.7% similar) in 355 aa overlap (33-387:1-355)
10 20 30 40 50 60
pF1KB8 EPLEALKLADLDFRKSSLASGWRMASGAFTMDQFPESVTENFEYDDLAEACYIGDIVVFG
::::::::::::::::::::::::::::::
NP_001 MDQFPESVTENFEYDDLAEACYIGDIVVFG
10 20 30
70 80 90 100 110 120
pF1KB8 TVFLSIFYSVIFAIGLVGNLLVVFALTNSKKPKSVTDIYLLNLALSDLLFVATLPFWTHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVFLSIFYSVIFAIGLVGNLLVVFALTNSKKPKSVTDIYLLNLALSDLLFVATLPFWTHY
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 LINEKGLHNAMCKFTTAFFFIGFFGSIFFITVISIDRYLAIVLAANSMNNRTVQHGVTIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LINEKGLHNAMCKFTTAFFFIGFFGSIFFITVISIDRYLAIVLAANSMNNRTVQHGVTIS
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 LGVWAAAILVAAPQFMFTKQKENECLGDYPEVLQEIWPVLRNVETNFLGFLLPLLIMSYC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGVWAAAILVAAPQFMFTKQKENECLGDYPEVLQEIWPVLRNVETNFLGFLLPLLIMSYC
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB8 YFRIIQTLFSCKNHKKAKAIKLILLVVIVFFLFWTPYNIMIFLETLKLYDFFPSCDMRKD
::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::
NP_001 YFRIIQTLFSCKNHKKAKAIKLILLVVIVFFLFWTPYNVMIFLETLKLYDFFPSCDMRKD
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB8 LRLALSVTEMVAFSHCCLNPLIYAFAGEKFRRYLYHLYGKCLAVLCGRSVHVDFSSSESQ
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRLALSVTETVAFSHCCLNPLIYAFAGEKFRRYLYHLYGKCLAVLCGRSVHVDFSSSESQ
280 290 300 310 320 330
370 380
pF1KB8 RSRHGSVLSSNFTYHTSDGDALLLL
:::::::::::::::::::::::::
NP_001 RSRHGSVLSSNFTYHTSDGDALLLL
340 350
>>NP_001164642 (OMIM: 601470,607339,609423,613784) CX3C (355 aa)
initn: 2335 init1: 2335 opt: 2335 Z-score: 2078.2 bits: 393.2 E(85289): 5.1e-109
Smith-Waterman score: 2335; 99.4% identity (99.7% similar) in 355 aa overlap (33-387:1-355)
10 20 30 40 50 60
pF1KB8 EPLEALKLADLDFRKSSLASGWRMASGAFTMDQFPESVTENFEYDDLAEACYIGDIVVFG
::::::::::::::::::::::::::::::
NP_001 MDQFPESVTENFEYDDLAEACYIGDIVVFG
10 20 30
70 80 90 100 110 120
pF1KB8 TVFLSIFYSVIFAIGLVGNLLVVFALTNSKKPKSVTDIYLLNLALSDLLFVATLPFWTHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVFLSIFYSVIFAIGLVGNLLVVFALTNSKKPKSVTDIYLLNLALSDLLFVATLPFWTHY
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 LINEKGLHNAMCKFTTAFFFIGFFGSIFFITVISIDRYLAIVLAANSMNNRTVQHGVTIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LINEKGLHNAMCKFTTAFFFIGFFGSIFFITVISIDRYLAIVLAANSMNNRTVQHGVTIS
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 LGVWAAAILVAAPQFMFTKQKENECLGDYPEVLQEIWPVLRNVETNFLGFLLPLLIMSYC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGVWAAAILVAAPQFMFTKQKENECLGDYPEVLQEIWPVLRNVETNFLGFLLPLLIMSYC
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB8 YFRIIQTLFSCKNHKKAKAIKLILLVVIVFFLFWTPYNIMIFLETLKLYDFFPSCDMRKD
::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::
NP_001 YFRIIQTLFSCKNHKKAKAIKLILLVVIVFFLFWTPYNVMIFLETLKLYDFFPSCDMRKD
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB8 LRLALSVTEMVAFSHCCLNPLIYAFAGEKFRRYLYHLYGKCLAVLCGRSVHVDFSSSESQ
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRLALSVTETVAFSHCCLNPLIYAFAGEKFRRYLYHLYGKCLAVLCGRSVHVDFSSSESQ
280 290 300 310 320 330
370 380
pF1KB8 RSRHGSVLSSNFTYHTSDGDALLLL
:::::::::::::::::::::::::
NP_001 RSRHGSVLSSNFTYHTSDGDALLLL
340 350
>>XP_016861176 (OMIM: 604836) PREDICTED: C-C chemokine r (360 aa)
initn: 933 init1: 453 opt: 941 Z-score: 849.7 bits: 165.9 E(85289): 1.4e-40
Smith-Waterman score: 941; 42.3% identity (71.3% similar) in 352 aa overlap (38-382:13-355)
10 20 30 40 50 60
pF1KB8 LKLADLDFRKSSLASGWRMASGAFTMDQFPESVTENFE-YDDLAEACYIGDIVVFGTVFL
::. :. :... . : : .:: .::
XP_016 MNPTDIADTTLDESIYSNYYLYESIPKPCTKEGIKAFGELFL
10 20 30 40
70 80 90 100 110 120
pF1KB8 SIFYSVIFAIGLVGNLLVVFALTNSKKPKSVTDIYLLNLALSDLLFVATLPFWTHYLINE
.::..:..::.:: .::..: . :. .:.::.::::::.:::::: .:::: .: ..
XP_016 PPLYSLVFVFGLLGNSVVVLVLFKYKRLRSMTDVYLLNLAISDLLFVFSLPFWGYYAADQ
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 KGLHNAMCKFTTAFFFIGFFGSIFFITVISIDRYLAIVLAANSMNNRTVQHGVTISLGVW
. ..::. . ....::...:::. ..::::::::: :. :. ::. .:: ::..:
XP_016 WVFGLGLCKMISWMYLVGFYSGIFFVMLMSIDRYLAIVHAVFSLRARTLTYGVITSLATW
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB8 AAAILVAAPQFMF----TKQKENECLGDYPEVLQEIWPVLRNVETNFLGFLLPLLIMSYC
..:.... : :.: :..... : : . . : :: ..: :.::...:: :: .:
XP_016 SVAVFASLPGFLFSTCYTERNHTYCKTKYS-LNSTTWKVLSSLEINILGLVIPLGIMLFC
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB8 YFRIIQTLFSCKNHKKAKAIKLILLVVIVFFLFWTPYNIMIFLETLKLYDFFPSCDMRKD
: ::.:: :::.:: ::.:.:. ::..:. :::::::..::::: . . .: ...
XP_016 YSMIIRTLQHCKNEKKNKAVKMIFAVVVLFLGFWTPYNIVLFLETLVELEVLQDCTFERY
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB8 LRLALSVTEMVAFSHCCLNPLIYAFAGEKFRRYLYHLYGKC--LAVLCGRSVHVDFSSSE
: :...:: .:: ::::::.:: : :::::.:. .:. : : ::: ... :..
XP_016 LDYAIQATETLAFVHCCLNPIIYFFLGEKFRKYILQLFKTCRGLFVLCQYCGLLQIYSAD
290 300 310 320 330 340
370 380
pF1KB8 SQRSRHGSVLSSNFTYHTSDGDALLLL
. ::..: : : :
XP_016 TP--------SSSYTQSTMDHDLHDAL
350 360
>>NP_005499 (OMIM: 604836) C-C chemokine receptor type 4 (360 aa)
initn: 933 init1: 453 opt: 941 Z-score: 849.7 bits: 165.9 E(85289): 1.4e-40
Smith-Waterman score: 941; 42.3% identity (71.3% similar) in 352 aa overlap (38-382:13-355)
10 20 30 40 50 60
pF1KB8 LKLADLDFRKSSLASGWRMASGAFTMDQFPESVTENFE-YDDLAEACYIGDIVVFGTVFL
::. :. :... . : : .:: .::
NP_005 MNPTDIADTTLDESIYSNYYLYESIPKPCTKEGIKAFGELFL
10 20 30 40
70 80 90 100 110 120
pF1KB8 SIFYSVIFAIGLVGNLLVVFALTNSKKPKSVTDIYLLNLALSDLLFVATLPFWTHYLINE
.::..:..::.:: .::..: . :. .:.::.::::::.:::::: .:::: .: ..
NP_005 PPLYSLVFVFGLLGNSVVVLVLFKYKRLRSMTDVYLLNLAISDLLFVFSLPFWGYYAADQ
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 KGLHNAMCKFTTAFFFIGFFGSIFFITVISIDRYLAIVLAANSMNNRTVQHGVTISLGVW
. ..::. . ....::...:::. ..::::::::: :. :. ::. .:: ::..:
NP_005 WVFGLGLCKMISWMYLVGFYSGIFFVMLMSIDRYLAIVHAVFSLRARTLTYGVITSLATW
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB8 AAAILVAAPQFMF----TKQKENECLGDYPEVLQEIWPVLRNVETNFLGFLLPLLIMSYC
..:.... : :.: :..... : : . . : :: ..: :.::...:: :: .:
NP_005 SVAVFASLPGFLFSTCYTERNHTYCKTKYS-LNSTTWKVLSSLEINILGLVIPLGIMLFC
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB8 YFRIIQTLFSCKNHKKAKAIKLILLVVIVFFLFWTPYNIMIFLETLKLYDFFPSCDMRKD
: ::.:: :::.:: ::.:.:. ::..:. :::::::..::::: . . .: ...
NP_005 YSMIIRTLQHCKNEKKNKAVKMIFAVVVLFLGFWTPYNIVLFLETLVELEVLQDCTFERY
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB8 LRLALSVTEMVAFSHCCLNPLIYAFAGEKFRRYLYHLYGKC--LAVLCGRSVHVDFSSSE
: :...:: .:: ::::::.:: : :::::.:. .:. : : ::: ... :..
NP_005 LDYAIQATETLAFVHCCLNPIIYFFLGEKFRKYILQLFKTCRGLFVLCQYCGLLQIYSAD
290 300 310 320 330 340
370 380
pF1KB8 SQRSRHGSVLSSNFTYHTSDGDALLLL
. ::..: : : :
NP_005 TP--------SSSYTQSTMDHDLHDAL
350 360
>>NP_005192 (OMIM: 601834) C-C chemokine receptor type 8 (355 aa)
initn: 863 init1: 466 opt: 931 Z-score: 840.9 bits: 164.3 E(85289): 4.2e-40
Smith-Waterman score: 931; 39.7% identity (75.3% similar) in 348 aa overlap (31-372:3-350)
10 20 30 40 50 60
pF1KB8 MREPLEALKLADLDFRKSSLASGWRMASGAFTMDQFPESVTENFEYDDLAEACYIGDIVV
.:.: .::. . : .. : : .
NP_005 MDYTLDLSVTTVTDYYYPDIFSSPCDAELIQT
10 20 30
70 80 90 100 110 120
pF1KB8 FGTVFLSIFYSVIFAIGLVGNLLVVFALTNSKKPKSVTDIYLLNLALSDLLFVATLPFWT
: ..:..:: ..:...:.:: ::...:. :: .:.::.::::::::::::: ..:: :
NP_005 NGKLLLAVFYCLLFVFSLLGNSLVILVLVVCKKLRSITDVYLLNLALSDLLFVFSFPFQT
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 HYLINEKGLHNAMCKFTTAFFFIGFFGSIFFITVISIDRYLAIVLAANSMNNRTVQHGVT
.::... . ..::: ...:..:::..:.::::..:.:::::.: :. ... ::.. :.:
NP_005 YYLLDQWVFGTVMCKVVSGFYYIGFYSSMFFITLMSVDRYLAVVHAVYALKVRTIRMGTT
100 110 120 130 140 150
190 200 210 220 230
pF1KB8 ISLGVWAAAILVAAPQFMFTK-QKENECLGDYPEVLQEI--WPVLRNVETNFLGFLLPLL
. :.:: .::... : ..: . .:. : : :. : .. : . :.::.:.:.
NP_005 LCLAVWLTAIMATIPLLVFYQVASEDGVLQCYSFYNQQTLKWKIFTNFKMNILGLLIPFT
160 170 180 190 200 210
240 250 260 270 280 290
pF1KB8 IMSYCYFRIIQTLFSCKNHKKAKAIKLILLVVIVFFLFWTPYNIMIFLETLKLYDFFPSC
:. .::..:.. : :.::.:.:::.:.:.:::. .:::.:.:...:: .:. . .. .:
NP_005 IFMFCYIKILHQLKRCQNHNKTKAIRLVLIVVIASLLFWVPFNVVLFLTSLHSMHILDGC
220 230 240 250 260 270
300 310 320 330 340 350
pF1KB8 DMRKDLRLALSVTEMVAFSHCCLNPLIYAFAGEKFRRYLYHLYGK-CLAVLC--GRSVHV
.. ..: : :::...:.:::.::.::::.::::...: ... : : .. ::..
NP_005 SISQQLTYATHVTEIISFTHCCVNPVIYAFVGEKFKKHLSEIFQKSCSQIFNYLGRQMPR
280 290 300 310 320 330
360 370 380
pF1KB8 DFSSSESQRSRHGSVLSSNFTYHTSDGDALLLL
. . :. ..:.: ::
NP_005 ESCEKSSSCQQHSSRSSSVDYIL
340 350
>>XP_011532371 (OMIM: 601267) PREDICTED: C-C chemokine r (360 aa)
initn: 619 init1: 597 opt: 921 Z-score: 832.1 bits: 162.6 E(85289): 1.3e-39
Smith-Waterman score: 921; 47.2% identity (75.6% similar) in 307 aa overlap (38-342:18-322)
10 20 30 40 50 60
pF1KB8 LKLADLDFRKSSLASGWRMASGAFTMDQFPESVTENFEYDDLAEACYIGDIVVFGTVFLS
: :: :.:: : :. :. .:. .:
XP_011 MLSTSRSRFIRNTNESGEEVTTFFDYDYGAP-CHKFDVKQIGAQLLP
10 20 30 40
70 80 90 100 110 120
pF1KB8 IFYSVIFAIGLVGNLLVVFALTNSKKPKSVTDIYLLNLALSDLLFVATLPFWTHYLINEK
.::..: .:.:::.:::. : : :: : .:::::::::.:::::. :::.:.: ::
XP_011 PLYSLVFIFGFVGNMLVVLILINCKKLKCLTDIYLLNLAISDLLFLITLPLWAHSAANEW
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 GLHNAMCKFTTAFFFIGFFGSIFFITVISIDRYLAIVLAANSMNNRTVQHGVTISLGVWA
. :::::. :... ::.::.:::: ...:::::::: :. ... ::: ::. :. .:
XP_011 VFGNAMCKLFTGLYHIGYFGGIFFIILLTIDRYLAIVHAVFALKARTVTFGVVTSVITWL
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB8 AAILVAAPQFMFTK-QKENECLGDYPEVLQEIWPVLRNVETNFLGFLLPLLIMSYCYFRI
.:.....: ..::: :::. : . . : .... :.::..:::::: :: :
XP_011 VAVFASVPGIIFTKCQKEDSVYVCGP-YFPRGWNNFHTIMRNILGLVLPLLIMVICYSGI
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB8 IQTLFSCKNHKKA-KAIKLILLVVIVFFLFWTPYNIMIFLETLKLYDFFPSCDMRKDLRL
..::. :.:.:: .:...:. ..::.:::::::::.:.:.:.. . . .:. ..:
XP_011 LKTLLRCRNEKKRHRAVRVIFTIMIVYFLFWTPYNIVILLNTFQEFFGLSNCESTSQLDQ
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB8 ALSVTEMVAFSHCCLNPLIYAFAGEKFRRYLYHLYGKCLAVLCGRSVHVDFSSSESQRSR
: .::: ....:::.::.::::.:::::::: .. :
XP_011 ATQVTETLGMTHCCINPIIYAFVGEKFRRYLSVFFRKHITKRFCKQCPVFYRETVDGVTS
290 300 310 320 330 340
370 380
pF1KB8 HGSVLSSNFTYHTSDGDALLLL
XP_011 TNTPSTGEQEVSAGL
350 360
>>NP_001116868 (OMIM: 601267) C-C chemokine receptor typ (360 aa)
initn: 619 init1: 597 opt: 921 Z-score: 832.1 bits: 162.6 E(85289): 1.3e-39
Smith-Waterman score: 921; 47.2% identity (75.6% similar) in 307 aa overlap (38-342:18-322)
10 20 30 40 50 60
pF1KB8 LKLADLDFRKSSLASGWRMASGAFTMDQFPESVTENFEYDDLAEACYIGDIVVFGTVFLS
: :: :.:: : :. :. .:. .:
NP_001 MLSTSRSRFIRNTNESGEEVTTFFDYDYGAP-CHKFDVKQIGAQLLP
10 20 30 40
70 80 90 100 110 120
pF1KB8 IFYSVIFAIGLVGNLLVVFALTNSKKPKSVTDIYLLNLALSDLLFVATLPFWTHYLINEK
.::..: .:.:::.:::. : : :: : .:::::::::.:::::. :::.:.: ::
NP_001 PLYSLVFIFGFVGNMLVVLILINCKKLKCLTDIYLLNLAISDLLFLITLPLWAHSAANEW
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 GLHNAMCKFTTAFFFIGFFGSIFFITVISIDRYLAIVLAANSMNNRTVQHGVTISLGVWA
. :::::. :... ::.::.:::: ...:::::::: :. ... ::: ::. :. .:
NP_001 VFGNAMCKLFTGLYHIGYFGGIFFIILLTIDRYLAIVHAVFALKARTVTFGVVTSVITWL
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB8 AAILVAAPQFMFTK-QKENECLGDYPEVLQEIWPVLRNVETNFLGFLLPLLIMSYCYFRI
.:.....: ..::: :::. : . . : .... :.::..:::::: :: :
NP_001 VAVFASVPGIIFTKCQKEDSVYVCGP-YFPRGWNNFHTIMRNILGLVLPLLIMVICYSGI
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB8 IQTLFSCKNHKKA-KAIKLILLVVIVFFLFWTPYNIMIFLETLKLYDFFPSCDMRKDLRL
..::. :.:.:: .:...:. ..::.:::::::::.:.:.:.. . . .:. ..:
NP_001 LKTLLRCRNEKKRHRAVRVIFTIMIVYFLFWTPYNIVILLNTFQEFFGLSNCESTSQLDQ
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB8 ALSVTEMVAFSHCCLNPLIYAFAGEKFRRYLYHLYGKCLAVLCGRSVHVDFSSSESQRSR
: .::: ....:::.::.::::.:::::::: .. :
NP_001 ATQVTETLGMTHCCINPIIYAFVGEKFRRYLSVFFRKHITKRFCKQCPVFYRETVDGVTS
290 300 310 320 330 340
370 380
pF1KB8 HGSVLSSNFTYHTSDGDALLLL
NP_001 TNTPSTGEQEVSAGL
350 360
>>NP_001286 (OMIM: 601159) C-C chemokine receptor type 1 (355 aa)
initn: 892 init1: 451 opt: 920 Z-score: 831.3 bits: 162.5 E(85289): 1.5e-39
Smith-Waterman score: 920; 44.9% identity (76.0% similar) in 312 aa overlap (41-346:13-322)
20 30 40 50 60 70
pF1KB8 ADLDFRKSSLASGWRMASGAFTMDQFPESVTENFEYDDLAEACYIGDIVVFGTVFLSIFY
: .:.: : : : . .::. .: .:
NP_001 METPNTTEDYDTTTEFDYGD-ATPCQKVNERAFGAQLLPPLY
10 20 30 40
80 90 100 110 120
pF1KB8 SVIFAIGLVGNLLVVFALTNSKKPKSVTDIYLLNLALSDLLFVATLPFWTHY-LINEKGL
:..:.::::::.:::..:.. :. :..:.:::::::.:::::. ::::: : : .. .
NP_001 SLVFVIGLVGNILVVLVLVQYKRLKNMTSIYLLNLAISDLLFLFTLPFWIDYKLKDDWVF
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 HNAMCKFTTAFFFIGFFGSIFFITVISIDRYLAIVLAANSMNNRTVQHGVTISLGVWAAA
.::::. ..:.. :... :::: ...:::::::: :. .. ::: :: :. .:: :
NP_001 GDAMCKILSGFYYTGLYSEIFFIILLTIDRYLAIVHAVFALRARTVTFGVITSIIIWALA
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB8 ILVAAPQFMFTKQK----ENECLGDYP-EVLQEIWPVLRNVETNFLGFLLPLLIMSYCYF
::.. : ..:.: . .. : .: : :.: : ... .. :..:..::::.: ::
NP_001 ILASMPGLYFSKTQWEFTHHTCSLHFPHESLRE-WKLFQALKLNLFGLVLPLLVMIICYT
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB8 RIIQTLFSCKNHKKAKAIKLILLVVIVFFLFWTPYNIMIFLETLKLYDFFPSCDMRKDLR
::. :. :.::.::..::....:.:::::::::. :.. ... . : :.. . :
NP_001 GIIKILLRRPNEKKSKAVRLIFVIMIIFFLFWTPYNLTILISVFQDFLFTHECEQSRHLD
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB8 LALSVTEMVAFSHCCLNPLIYAFAGEKFRRYLYHLYGKCLAVLCGRSVHVDFSSSESQRS
::..:::..:..:::.::.::::.::.::.:: .:. . .::
NP_001 LAVQVTEVIAYTHCCVNPVIYAFVGERFRKYLRQLFHRRVAVHLVKWLPFLSVDRLERVS
290 300 310 320 330 340
370 380
pF1KB8 RHGSVLSSNFTYHTSDGDALLLL
NP_001 STSPSTGEHELSAGF
350
387 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 01:39:11 2016 done: Sat Nov 5 01:39:12 2016
Total Scan time: 7.330 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]