Result of FASTA (ccds) for
pF1KB8982
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8982, 378 aa
1>>>pF1KB8982 378 - 378 aa - 378 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.7619+/-0.00077; mu= 3.0536+/- 0.047
mean_var=208.0123+/-42.072, 0's: 0 Z-trim(116.3): 68 B-trim: 165 in 1/54
Lambda= 0.088926
statistics sampled from 16817 (16885) to 16817 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.815), E-opt: 0.2 (0.519), width: 16
Scan time: 3.410
The best scores are: opt bits E(32554)
CCDS4372.1 FOXI1 gene_id:2299|Hs108|chr5 ( 378) 2660 353.1 2.4e-97
CCDS47337.1 FOXI1 gene_id:2299|Hs108|chr5 ( 283) 1386 189.6 3e-48
CCDS7655.2 FOXI2 gene_id:399823|Hs108|chr10 ( 318) 896 126.7 2.8e-29
CCDS77433.1 FOXI3 gene_id:344167|Hs108|chr2 ( 420) 818 116.8 3.5e-26
CCDS4473.1 FOXC1 gene_id:2296|Hs108|chr6 ( 553) 560 83.8 4e-16
CCDS10959.1 FOXL1 gene_id:2300|Hs108|chr16 ( 345) 552 82.6 5.7e-16
CCDS35078.1 FOXE1 gene_id:2304|Hs108|chr9 ( 373) 523 78.9 7.9e-15
CCDS10958.1 FOXC2 gene_id:2303|Hs108|chr16 ( 501) 519 78.5 1.4e-14
CCDS13192.1 FOXS1 gene_id:2307|Hs108|chr20 ( 330) 505 76.6 3.6e-14
CCDS550.1 FOXE3 gene_id:2301|Hs108|chr1 ( 319) 500 75.9 5.4e-14
CCDS624.1 FOXD3 gene_id:27022|Hs108|chr1 ( 478) 492 75.0 1.5e-13
CCDS3105.1 FOXL2 gene_id:668|Hs108|chr3 ( 376) 489 74.6 1.6e-13
CCDS9636.1 FOXG1 gene_id:2290|Hs108|chr14 ( 489) 489 74.7 2e-13
CCDS13147.1 FOXA2 gene_id:3170|Hs108|chr20 ( 457) 487 74.4 2.3e-13
CCDS46585.1 FOXA2 gene_id:3170|Hs108|chr20 ( 463) 487 74.4 2.3e-13
CCDS30708.1 FOXD2 gene_id:2306|Hs108|chr1 ( 495) 486 74.3 2.7e-13
CCDS75259.1 FOXD1 gene_id:2297|Hs108|chr5 ( 465) 480 73.5 4.3e-13
CCDS12677.1 FOXA3 gene_id:3171|Hs108|chr19 ( 350) 466 71.6 1.2e-12
CCDS2117.1 FOXD4L1 gene_id:200350|Hs108|chr2 ( 408) 466 71.7 1.4e-12
CCDS75845.1 FOXD4L4 gene_id:349334|Hs108|chr9 ( 416) 455 70.2 3.7e-12
CCDS47977.1 FOXD4L5 gene_id:653427|Hs108|chr9 ( 416) 455 70.2 3.7e-12
CCDS43833.1 FOXD4L3 gene_id:286380|Hs108|chr9 ( 417) 454 70.1 4e-12
CCDS43826.1 FOXD4L6 gene_id:653404|Hs108|chr9 ( 417) 453 70.0 4.4e-12
CCDS9665.1 FOXA1 gene_id:3169|Hs108|chr14 ( 472) 454 70.2 4.4e-12
CCDS35045.1 FOXB2 gene_id:442425|Hs108|chr9 ( 432) 452 69.9 4.9e-12
CCDS32255.1 FOXB1 gene_id:27023|Hs108|chr15 ( 325) 444 68.8 8e-12
CCDS34975.1 FOXD4 gene_id:2298|Hs108|chr9 ( 439) 445 69.0 9.3e-12
CCDS30689.1 FOXJ3 gene_id:22887|Hs108|chr1 ( 622) 433 67.6 3.5e-11
CCDS4472.1 FOXF2 gene_id:2295|Hs108|chr6 ( 444) 425 66.4 5.5e-11
CCDS10957.2 FOXF1 gene_id:2294|Hs108|chr16 ( 379) 423 66.1 5.9e-11
CCDS11813.1 FOXK2 gene_id:3607|Hs108|chr17 ( 660) 427 66.8 6.3e-11
CCDS32739.1 FOXJ1 gene_id:2302|Hs108|chr17 ( 421) 421 65.9 7.6e-11
CCDS4471.1 FOXQ1 gene_id:94234|Hs108|chr6 ( 403) 420 65.7 8e-11
CCDS34591.1 FOXK1 gene_id:221937|Hs108|chr7 ( 733) 423 66.3 9.8e-11
>>CCDS4372.1 FOXI1 gene_id:2299|Hs108|chr5 (378 aa)
initn: 2660 init1: 2660 opt: 2660 Z-score: 1861.3 bits: 353.1 E(32554): 2.4e-97
Smith-Waterman score: 2660; 100.0% identity (100.0% similar) in 378 aa overlap (1-378:1-378)
10 20 30 40 50 60
pF1KB8 MSSFDLPAPSPPRCSPQFPSIGQEPPEMNLYYENFFHPQGVPSPQRPSFEGGGEYGATPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MSSFDLPAPSPPRCSPQFPSIGQEPPEMNLYYENFFHPQGVPSPQRPSFEGGGEYGATPN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 PYLWFNGPTMTPPPYLPGPNASPFLPQAYGVQRPLLPSVSGLGGSDLGWLPIPSQEELMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PYLWFNGPTMTPPPYLPGPNASPFLPQAYGVQRPLLPSVSGLGGSDLGWLPIPSQEELMK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LVRPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LVRPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 FKKVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRKSDVSSSTASLALEKTESSLPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 FKKVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRKSDVSSSTASLALEKTESSLPV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 DSPKTTEPQDILDGASPGGTTSSPEKRPSPPPSGAPCLNSFLSSMTAYVSGGSPTSHPLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DSPKTTEPQDILDGASPGGTTSSPEKRPSPPPSGAPCLNSFLSSMTAYVSGGSPTSHPLV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 TPGLSPEPSDKTGQNSLTFNSFSPLTNLSNHSGGGDWANPMPTNMLSYGGSVLSQFSPHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TPGLSPEPSDKTGQNSLTFNSFSPLTNLSNHSGGGDWANPMPTNMLSYGGSVLSQFSPHF
310 320 330 340 350 360
370
pF1KB8 YNSVNTSGVLYPREGTEV
::::::::::::::::::
CCDS43 YNSVNTSGVLYPREGTEV
370
>>CCDS47337.1 FOXI1 gene_id:2299|Hs108|chr5 (283 aa)
initn: 2000 init1: 1386 opt: 1386 Z-score: 979.7 bits: 189.6 E(32554): 3e-48
Smith-Waterman score: 1814; 74.9% identity (74.9% similar) in 378 aa overlap (1-378:1-283)
10 20 30 40 50 60
pF1KB8 MSSFDLPAPSPPRCSPQFPSIGQEPPEMNLYYENFFHPQGVPSPQRPSFEGGGEYGATPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MSSFDLPAPSPPRCSPQFPSIGQEPPEMNLYYENFFHPQGVPSPQRPSFEGGGEYGATPN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 PYLWFNGPTMTPPPYLPGPNASPFLPQAYGVQRPLLPSVSGLGGSDLGWLPIPSQEELMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PYLWFNGPTMTPPPYLPGPNASPFLPQAYGVQRPLLPSVSGLGGSDLGWLPIPSQEELMK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LVRPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LVRPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 FKKVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRKSDVSSSTASLALEKTESSLPV
:::::::::::
CCDS47 FKKVPRDEDDP-------------------------------------------------
190
250 260 270 280 290 300
pF1KB8 DSPKTTEPQDILDGASPGGTTSSPEKRPSPPPSGAPCLNSFLSSMTAYVSGGSPTSHPLV
::::::::::::::
CCDS47 ----------------------------------------------AYVSGGSPTSHPLV
200
310 320 330 340 350 360
pF1KB8 TPGLSPEPSDKTGQNSLTFNSFSPLTNLSNHSGGGDWANPMPTNMLSYGGSVLSQFSPHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 TPGLSPEPSDKTGQNSLTFNSFSPLTNLSNHSGGGDWANPMPTNMLSYGGSVLSQFSPHF
210 220 230 240 250 260
370
pF1KB8 YNSVNTSGVLYPREGTEV
::::::::::::::::::
CCDS47 YNSVNTSGVLYPREGTEV
270 280
>>CCDS7655.2 FOXI2 gene_id:399823|Hs108|chr10 (318 aa)
initn: 867 init1: 799 opt: 896 Z-score: 639.2 bits: 126.7 E(32554): 2.8e-29
Smith-Waterman score: 922; 48.4% identity (67.4% similar) in 341 aa overlap (39-378:17-318)
10 20 30 40 50 60
pF1KB8 PSPPRCSPQFPSIGQEPPEMNLYYENFFHPQGVPSPQRPSFEGGGEYGATPNPYLWFNGP
:. . . :..: : .. .: :: :.:
CCDS76 MATYCDDLGPSSAPPGQAQATAHPPGYEPGDLGAVGGGPLLWVNAP
10 20 30 40
70 80 90 100 110 120
pF1KB8 TMTPPPYLPGPN-ASPFLPQAYGVQRPLLPSVSGLGGSDLGWLPIPSQEELMKLVRPPYS
...: : ::. : :. .::. ::: . .::.:.::.:: . .:.::..:::::::
CCDS76 ALSPKSYASGPGPAPPYAAPSYGAPGPLLGAPGGLAGADLAWLSLSGQQELLRLVRPPYS
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 YSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFKKVPRD
:::::::::..:: ..::::::::::: :::::..:::::::::::::::::::::::::
CCDS76 YSALIAMAIQSAPLRKLTLSQIYQYVAGNFPFYKRSKAGWQNSIRHNLSLNDCFKKVPRD
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB8 EDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRKSDVSSSTASLALEKTESSLPVDSPKTTE
:::::::::::::::::::::::::::::::....:... : : . :. : ..
CCDS76 EDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRRAEASAAVRSGARSVGGAEAPALEPPSAA
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB8 PQDILDGASPGGTTSSPEKRPSPPPSGAPCLNSFLSSMTAYVSGGSPTSHPLVTPGLSPE
:. :::. :: : . : :...: :.:.: ..:: : : ::. .
CCDS76 CLDLQ--ASPS---------PSAPEA-ATCFSGFASAMSA-LAGGLGT-FP---GGLAGD
230 240 250 260
310 320 330 340 350 360
pF1KB8 PSDKTGQNSLTFNSFSPLTNLSNHSGGGDWANPMPTNMLSYGGSVLSQFSPHFYNSVNTS
: :. : . .: : : : : .: : .. . .: ::..
CCDS76 FS--FGRRPPTVATHAPQT--LNPSPG--FA---PGHQTAAAGFRLSHL-----------
270 280 290 300
370
pF1KB8 GVLYPREGTEV
:: ::::::
CCDS76 --LYSREGTEV
310
>>CCDS77433.1 FOXI3 gene_id:344167|Hs108|chr2 (420 aa)
initn: 864 init1: 733 opt: 818 Z-score: 583.5 bits: 116.8 E(32554): 3.5e-26
Smith-Waterman score: 977; 44.8% identity (65.7% similar) in 397 aa overlap (40-378:28-420)
10 20 30 40 50 60
pF1KB8 SPPRCSPQFPSIGQEPPEMNLYYENFFHPQGVPSPQRPSFEGGGEYGATP----NPYLWF
:.: : . : ..:.: : :::::.
CCDS77 MALYCGDNFGVYSQPGLPPPAATAAAPGAPPAARAPY-GLADYAAPPAAAANPYLWL
10 20 30 40 50
70 80 90
pF1KB8 NGPTM-----------------TPPPYLPGPNASPFL--PQAYGV----QRPLL---PSV
::: . ::: :: :.::: : : :. :::. :..
CCDS77 NGPGVGGPPSAAAAAAAAYLGAPPPPPPPGAAAGPFLQPPPAAGTFGCSQRPFAQPAPAA
60 70 80 90 100 110
100 110 120 130 140 150
pF1KB8 SG-----LGGSDLGWLPIPSQEELMKLVRPPYSYSALIAMAIHGAPDKRLTLSQIYQYVA
. : ..:::: . :.:.:::.:::::::::::::::..::...::::.:::.::
CCDS77 PASPAAPAGPGELGWLSMASREDLMKMVRPPYSYSALIAMAIQSAPERKLTLSHIYQFVA
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB8 DNFPFYNKSKAGWQNSIRHNLSLNDCFKKVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRR
:.::::..::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 DSFPFYQRSKAGWQNSIRHNLSLNDCFKKVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRR
180 190 200 210 220 230
220 230 240 250 260
pF1KB8 KRKRKSDVSS-STASLALEKTESSLPVD-------SPKTTEPQDILDGAS----PGGTTS
::::.:..:. ::.. . :.: .: .:. :. .: . : :: :
CCDS77 KRKRRSEASNGSTVAAGTSKSEEGLSSGLGSGVGGKPEEESPSTLLRPSHSPEPPEGTKS
240 250 260 270 280 290
270 280 290 300 310
pF1KB8 SPEKRPSPPPSGAPCLNSFLSSMTAYVSGGS-------PTSHPLVTPGLSPEPSDKTGQN
. . .: ...::::.:.::... ..: : :. : : . : . .
CCDS77 TASSPGGPMLTSTPCLNTFFSSLSSLSVSSSVSTQRALPGSRHLGIQGAQLPSSGVFSPT
300 310 320 330 340 350
320 330 340 350 360 370
pF1KB8 SLTFNSFSPL--TNLSNHSGG--GDWANPMPTNMLSYGGSVLSQFSPHFYNSVNTSGVLY
:.. : . : .: ...: : ... .:.:.. . ::. : :: :.: .....:
CCDS77 SISEASADTLQLSNSTSNSTGQRSSYYSPFPAS--TSGGQS-SPFSSPFHNFSMVNSLIY
360 370 380 390 400 410
pF1KB8 PREGTEV
::::.::
CCDS77 PREGSEV
420
>>CCDS4473.1 FOXC1 gene_id:2296|Hs108|chr6 (553 aa)
initn: 578 init1: 509 opt: 560 Z-score: 402.9 bits: 83.8 E(32554): 4e-16
Smith-Waterman score: 573; 39.2% identity (58.7% similar) in 288 aa overlap (76-328:40-317)
50 60 70 80 90 100
pF1KB8 RPSFEGGGEYGATPNPYLWFNGPTMTPPPYLPGPNASPFLPQAYGVQRPLLPSVSGLGGS
.:.: : . :.. : : ::
CCDS44 PNSLGVVPYLGGEQSYYRAAAAAAGGGYTAMPAP-MSVYSHPAHAEQYP--------GGM
10 20 30 40 50 60
110 120 130 140 150 160
pF1KB8 DLGWLPIPSQEELMKLVRPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKA
.. : : . .:.::::: :::.:::..::::..::. :::.. : :::: .:
CCDS44 ARAYGPYTPQPQPKDMVKPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRDNKQ
70 80 90 100 110 120
170 180 190 200 210 220
pF1KB8 GWQNSIRHNLSLNDCFKKVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKR--KSD-V
:::::::::::::.:: :::::. ::::.::::::. .::.::.: :.:.: :.: :
CCDS44 GWQNSIRHNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENGSFLRRRRRFKKKDAV
130 140 150 160 170 180
230 240 250 260
pF1KB8 SSSTASLALEKTESSLPVDSPKTTEPQDILDGASPG---------------GTTSSPEKR
... . :. : : .: . :.. :: .:: :: :: .
CCDS44 KDKEEKDRLHLKEPPPPGRQPPPAPPEQA-DGNAPGPQPPPVRIQDIKTENGTCPSPPQP
190 200 210 220 230
270 280 290 300 310
pF1KB8 PSPPP---SGA----PCLNSFLSSMTAYVSGGSP-----TSHPLVTPGLS-----PEPSD
:: ::. : ..: :: .. ::.:: ...:: : . : ::
CCDS44 LSPAAALGSGSAAAVPKIESPDSSSSSLSSGSSPPGSLPSARPLSLDGADSAPPPPAPSA
240 250 260 270 280 290
320 330 340 350 360 370
pF1KB8 KTGQNSLTFNSFSPLTNLSNHSGGGDWANPMPTNMLSYGGSVLSQFSPHFYNSVNTSGVL
..: :. . .:.:
CCDS44 PPPHHSQGFSVDNIMTSLRGSPQSAAAELSSGLLASAAASSRAGIAPPLALGAYSPGQSS
300 310 320 330 340 350
>>CCDS10959.1 FOXL1 gene_id:2300|Hs108|chr16 (345 aa)
initn: 576 init1: 493 opt: 552 Z-score: 400.2 bits: 82.6 E(32554): 5.7e-16
Smith-Waterman score: 566; 38.0% identity (58.0% similar) in 324 aa overlap (74-364:7-312)
50 60 70 80 90 100
pF1KB8 PQRPSFEGGGEYGATPNPYLWFNGPTMTPPPYLPGPNASPFLPQAYGVQRPLLPSVSGLG
: ::. :::.: :: .:: :: :.
CCDS10 MSHLFDPRLPALAASPML-YLYGPERPGLP----LA
10 20 30
110 120 130 140 150 160
pF1KB8 GSDLGWLPIPSQEELMKLVRPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKS
. . : .. : . .::::: :::::::. ::..:.::. :::.. : ::::. .
CCDS10 FAPAAALAASGRAETPQ--KPPYSYIALIAMAIQDAPEQRVTLNGIYQFIMDRFPFYHDN
40 50 60 70 80
170 180 190 200 210
pF1KB8 KAGWQNSIRHNLSLNDCFKKVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKR-------
. :::::::::::::::: ::::.. ::::.:::::: : ::.:::.::..
CCDS10 RQGWQNSIRHNLSLNDCFVKVPREKGRPGKGSYWTLDPRCLDMFENGNYRRRKRKPKPGP
90 100 110 120 130 140
220 230 240 250 260
pF1KB8 -----KRKSDVSSSTASLALEKTESSLPVDSPKTTE-------PQDILDGASPGGTTSSP
:: . . .. : .. :. ..: .. :. .::: :: . :
CCDS10 GAPEAKRPRAETHQRSAEAQPEAGSGAGGSGPAISRLQAAPAGPSPLLDGPSPPAPLHWP
150 160 170 180 190 200
270 280 290 300 310 320
pF1KB8 -EKRPSPPPSGAPCLNSFLSSMTAYVSGGSPTSHPLVTPGL--SPEPSDKTGQNSLTFNS
:. . : . .. : .: .: : :: :. ::. :::. .:
CCDS10 GTASPNEDAGDAAQGAAAVAVGQAARTGDGPGS-PL-RPASRSSPKSSDKS-------KS
210 220 230 240 250 260
330 340 350 360 370
pF1KB8 FSPLTNLSNHSG----GGDW----ANPMPTNMLSYGGSVL---SQFSPHFYNSVNTSGVL
:: . :....: .:: :.: : . : :.:.: :.. : : :.
CCDS10 FSIDSILAGKQGQKPPSGDELLGGAKPGPGGRL--GASLLAASSSLRPPFNASLMLDPHV
270 280 290 300 310
pF1KB8 YPREGTEV
CCDS10 QGGFYQLGIPFLSYFPLQVPDTVLHFQ
320 330 340
>>CCDS35078.1 FOXE1 gene_id:2304|Hs108|chr9 (373 aa)
initn: 479 init1: 458 opt: 523 Z-score: 379.7 bits: 78.9 E(32554): 7.9e-15
Smith-Waterman score: 523; 37.1% identity (56.5% similar) in 294 aa overlap (72-350:7-283)
50 60 70 80 90
pF1KB8 PSPQRPSFEGGGEYGATPNPYLWFNGPTMTPPPYLPGPNASPFLPQ-----AYGVQRPLL
::: : :.. . . : :. :
CCDS35 MTAESGPPP--PQPEVLATVKEERGETAAGAGVPGE
10 20 30
100 110 120 130 140 150
pF1KB8 PSVSGLGGSDLGWLPIPSQEELMKLVRPPYSYSALIAMAIHGAPDKRLTLSQIYQYVADN
. : :: ... .. .::::: ::::::: ::..::::. ::.....
CCDS35 ATGRGAGGR--------RRKRPLQRGKPPYSYIALIAMAIAHAPERRLTLGGIYKFITER
40 50 60 70 80
160 170 180 190 200 210
pF1KB8 FPFYNKSKAGWQNSIRHNLSLNDCFKKVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKR
:::: . :::::::::.::::: :.::. :::::::.:::: : ::..:.: :.:
CCDS35 FPFYRDNPKKWQNSIRHNLTLNDCFLKIPREAGRPGKGNYWALDPNAEDMFESGSFLRRR
90 100 110 120 130 140
220 230 240 250 260 270
pF1KB8 KR--KSDVSSSTASLALEKTESSLPVDSPKTTEPQDILDGASPGGTTSSPEKRPS--PPP
:: .::.:. : . . .. . . .. :. :: :.. : . ::
CCDS35 KRFKRSDLSTYPAYM---HDAAAAAAAAAAAAAAAAIFPGAVPAARPPYPGAVYAGYAPP
150 160 170 180 190 200
280 290 300 310 320
pF1KB8 SGA---PCLNSFLSSMTAYVSGGSPTSHPLVTPGLSPEPSDKTGQNSLTFNSF-SPLTNL
: : : : : : : .:: .: :.: :: : : .: : .: :.
CCDS35 SLAAPPPVYYPAASPGPCRVFGLVPE-RPL-SPELGPAPSGPGG--SCAFASAGAPATTT
210 220 230 240 250
330 340 350 360 370
pF1KB8 SNHSGGGDWANPM-PTNMLS-YGGSVLSQFSPHFYNSVNTSGVLYPREGTEV
. . .: : : :. . . :.:
CCDS35 GYQPAGCTGARPANPSAYAAAYAGPDGAYPQGAGSAIFAAAGRLAGPASPPAGGSSGGVE
260 270 280 290 300 310
>>CCDS10958.1 FOXC2 gene_id:2303|Hs108|chr16 (501 aa)
initn: 521 init1: 492 opt: 519 Z-score: 375.1 bits: 78.5 E(32554): 1.4e-14
Smith-Waterman score: 545; 42.0% identity (63.6% similar) in 250 aa overlap (121-351:70-308)
100 110 120 130 140 150
pF1KB8 VQRPLLPSVSGLGGSDLGWLPIPSQEELMKLVRPPYSYSALIAMAIHGAPDKRLTLSQIY
::.::::: :::.:::..::.:..::. ::
CCDS10 VYSGHPEQYSAGMGRSYAPYHHHQPAAPKDLVKPPYSYIALITMAIQNAPEKKITLNGIY
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB8 QYVADNFPFYNKSKAGWQNSIRHNLSLNDCFKKVPRDEDDPGKGNYWTLDPNCEKMFDNG
:.. : :::: ..: :::::::::::::.:: :::::. ::::.::::::. .::.::
CCDS10 QFIMDRFPFYRENKQGWQNSIRHNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMFENG
100 110 120 130 140 150
220 230 240 250
pF1KB8 NFRRKRKR--KSDVSSST---ASL-----ALEKTESSLP--VDSPKTTEPQDIL--DGAS
.: :.:.: :.:::. : : : : . : .:.:: .: . .. ..::
CCDS10 SFLRRRRRFKKKDVSKEKEERAHLKEPPPAASKGAPATPHLADAPKEAEKKVVIKSEAAS
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB8 PGGTTSSPEKRPSPPPS--GAPCLNSFLSSMTAYVSGGSPTSH---PLVTPGLSPEPSDK
:. . . . :: . :.: : :. .. .:. : : : ::.: :
CCDS10 PALPVITKVETLSPESALQGSP--RSAASTPAGSPDGSLPEHHAAAPNGLPGFSVE----
220 230 240 250 260 270
320 330 340 350 360 370
pF1KB8 TGQNSLTFNSFSPLTNLSNHSGGGDWANPMPTNMLSYGGSVLSQFSPHFYNSVNTSGVLY
: .:. . : .:: :.: . .: : :...
CCDS10 ---NIMTLRTSPPGGELS--PGAGRAGLVVPPLALPYAAAPPAAYGQPCAQGLEAGAAGG
280 290 300 310 320
pF1KB8 PREGTEV
CCDS10 YQCSMRAMSLYTGAERPAHMCVPPALDEALSDHPSGPTSPLSALNLAAGQEGALAATGHH
330 340 350 360 370 380
>>CCDS13192.1 FOXS1 gene_id:2307|Hs108|chr20 (330 aa)
initn: 525 init1: 462 opt: 505 Z-score: 367.9 bits: 76.6 E(32554): 3.6e-14
Smith-Waterman score: 505; 36.8% identity (61.6% similar) in 250 aa overlap (110-356:6-248)
80 90 100 110 120 130
pF1KB8 NASPFLPQAYGVQRPLLPSVSGLGGSDLGWLPIPSQEELMKLVRPPYSYSALIAMAIHGA
:: :. ..::::: :::::::...
CCDS13 MQQQPLPGPGAPTTEP-TKPPYSYIALIAMAIQSS
10 20 30
140 150 160 170 180 190
pF1KB8 PDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFKKVPRDEDDPGKGNYWTL
: .: ::: ::.:. : :: ... :::::::::::::.:: :::::. ::::.::::
CCDS13 PGQRATLSGIYRYIMGRFAFYRHNRPGWQNSIRHNLSLNECFVKVPRDDRKPGKGSYWTL
40 50 60 70 80 90
200 210 220 230 240 250
pF1KB8 DPNCEKMFDNGNFRRKRKRKSDVSSSTASLALEKTESSLPVDSPKTTEPQDI-LDGASPG
::.:. ::..:.: :.:.: . ... .. . :.. . : . :: . .:. :
CCDS13 DPDCHDMFEHGSFLRRRRRFTRQTGAEGTRGPAKARRG-----PLRATSQDPGVPNATTG
100 110 120 130 140
260 270 280 290 300 310
pF1KB8 GTTSSPEKRPSPPP-SGAPCLNSFLSSMTAYVSGGSPTSHPLVTPGLS-PEPSDKTGQNS
: : . :.: : . .... .:: .. : : :. .: :.:.
CCDS13 RQCSFPPELPDPKGLSFGGLVGAMPASMCPATTDGRPRP-PMEPKEISTPKPACPGELPV
150 160 170 180 190 200
320 330 340 350 360 370
pF1KB8 LTFNSFSPLTNLSNHSGGGDWANPMPTNMLSYGGSVLSQFSPHFYNSVNTSGVLYPREGT
: .: : .. . .. : :: .:: ... :..
CCDS13 ATSSSSCPAFGFPAGFSEAESFNKAPTPVLSPESGIGSSYQCRLQALNFCMGADPGLEHL
210 220 230 240 250 260
pF1KB8 EV
CCDS13 LASAAPSPAPPTPPGSLRAPLPLPTDHKEPWVAGGFPVQGGSGYPLGLTPCLYRTPGMFF
270 280 290 300 310 320
>>CCDS550.1 FOXE3 gene_id:2301|Hs108|chr1 (319 aa)
initn: 455 init1: 455 opt: 500 Z-score: 364.7 bits: 75.9 E(32554): 5.4e-14
Smith-Waterman score: 500; 33.8% identity (55.5% similar) in 308 aa overlap (60-358:8-301)
30 40 50 60 70 80
pF1KB8 LYYENFFHPQGVPSPQRPSFEGGGEYGATPNPYLWFNGPTMTPPPYLPGPNASPFLPQAY
.: :.: : :: ::.
CCDS55 MAGRSDMDPPAAFSGFPALPAVAPSGPPPSPLAGAEP
10 20 30
90 100 110 120 130 140
pF1KB8 GVQRPLLPSVSGLGGSDLGWLPIPSQEELMKLVR--PPYSYSALIAMAIHGAPDKRLTLS
: : ...: : . : :.... : : ::::: ::::::. :: .::::.
CCDS55 G--REPEEAAAGRGEAAPTPAPGPGRRRRRPLQRGKPPYSYIALIAMALAHAPGRRLTLA
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB8 QIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFKKVPRDEDDPGKGNYWTLDPNCEKMF
::..... : :: : :::::::::.::::: ::::. .::::::::::: ::
CCDS55 AIYRFITERFAFYRDSPRKWQNSIRHNLTLNDCFVKVPREPGNPGKGNYWTLDPAAADMF
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB8 DNGNFRRKRKRKSDVSSSTASLALEKTESSLPVDSPKTTEPQDILDGASPGGTTSSPEKR
:::.: :.::: . . . . : .: .: . : .:. . :
CCDS55 DNGSFLRRRKRFKRAELPAHAAAAPGPPLPFPY-APYAPAP-------GPALLVPPPSAG
160 170 180 190 200
270 280 290 300 310 320
pF1KB8 PSP-PPSGAPCLNSFLSSMTAYVSGGSPTSHPLVTPGLSPE---PSDKTGQNSLTFNSFS
:.: ::. ..:... . .. :.: ..: . : ... : . .
CCDS55 PGPSPPARLFSVDSLVNLQPELAGLGAPEPPCCAAPDAAAAAFPPCAAAASPPLYSQVPD
210 220 230 240 250 260
330 340 350 360 370
pF1KB8 PLTNLSNHSGGGDWANPMPTN-MLSYGG--SVLSQFSPHFYNSVNTSGVLYPREGTEV
:. ... : : :.:.. .:. .: ..:. .::
CCDS55 RLVLPATRPGPG----PLPAEPLLALAGPAAALGPLSPGEAYLRQPGFASGLERYL
270 280 290 300 310
378 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:50:08 2016 done: Fri Nov 4 16:50:09 2016
Total Scan time: 3.410 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]