FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8980, 376 aa
  1>>>pF1KB8980 376 - 376 aa - 376 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.9068+/-0.000802; mu= 1.9726+/- 0.049
 mean_var=202.6803+/-41.877, 0's: 0 Z-trim(115.4): 150  B-trim: 871 in 2/51
 Lambda= 0.090088
 statistics sampled from 15790 (15956) to 15790 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.799), E-opt: 0.2 (0.49), width:  16
 Scan time:  3.000

The best scores are:                                      opt bits E(32554)
CCDS5403.1 HOXA2 gene_id:3199|Hs108|chr7           ( 376) 2513 338.5   6e-93
CCDS11527.1 HOXB2 gene_id:3212|Hs108|chr17         ( 356)  866 124.4 1.6e-28


>>CCDS5403.1 HOXA2 gene_id:3199|Hs108|chr7                (376 aa)
 initn: 2513 init1: 2513 opt: 2513  Z-score: 1782.2  bits: 338.5 E(32554): 6e-93
Smith-Waterman score: 2513; 100.0% identity (100.0% similar) in 376 aa overlap (1-376:1-376)

               10        20        30        40        50        60
pF1KB8 MNYEFEREIGFINSQPSLAECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MNYEFEREIGFINSQPSLAECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PGSHPRHGAGGRPKPSPAGSRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PGSHPRHGAGGRPKPSPAGSRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 ATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 DLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKCKSLEDSEKVEEDEEEKTLFEQALSVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKCKSLEDSEKVEEDEEEKTLFEQALSVS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 GALLEREGYTFQQNALSQQQAPNGHNGDSQSFPVSPLTSNEKNLKHFQHQSPTVPNCLST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GALLEREGYTFQQNALSQQQAPNGHNGDSQSFPVSPLTSNEKNLKHFQHQSPTVPNCLST
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 MGQNCGAGLNNDSPEALEVPSLQDFSVFSTDSCLQLSDAVSPSLPGSLDSPVDISADSLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MGQNCGAGLNNDSPEALEVPSLQDFSVFSTDSCLQLSDAVSPSLPGSLDSPVDISADSLD
              310       320       330       340       350       360

              370      
pF1KB8 FFTDTLTTIDLQHLNY
       ::::::::::::::::
CCDS54 FFTDTLTTIDLQHLNY
              370      

>>CCDS11527.1 HOXB2 gene_id:3212|Hs108|chr17              (356 aa)
 initn: 921 init1: 716 opt: 866  Z-score: 625.7  bits: 124.4 E(32554): 1.6e-28
Smith-Waterman score: 1037; 50.3% identity (67.5% similar) in 378 aa overlap (1-372:1-354)

               10        20        30        40        50        60
pF1KB8 MNYEFEREIGFINSQPSLAECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLN
       ::.::::::::::::::::::::::: : .:::.:::: :::      :::::::.:::.
CCDS11 MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPP---PPPFEQTFPSLQ
               10        20        30        40           50       

                 70        80        90        100       110       
pF1KB8 PGSHP--RHGAGGRPKPSPAGSRGSPVPAGALQP-PEYPWMKEKKAAKKTALLPAAAAAA
       ::.    :  .  : . .::     : :  :  : ::.:::::::.::: .   .. . :
CCDS11 PGASTLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPA
        60        70        80        90       100       110       

       120       130       140       150       160       170       
pF1KB8 TAAATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIA
       ..:. . .  :  ..: . ...:::.::::::::::::::::::::::::::::::::::
CCDS11 ASAVPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIA
       120       130       140       150       160       170       

       180       190       200       210        220       230      
pF1KB8 ALLDLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKCK-SLEDSEKVEEDEEEKTLFEQA
       :::::::::::::::::::::::::: .:  ..:  :  .:::   . .  ::      :
CCDS11 ALLDLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALED---ICDPAEEP-----A
       180       190       200       210       220                 

        240       250       260       270       280       290      
pF1KB8 LSVSGALLEREGYTFQQNALSQQQAPNGHNGDSQSFPVSPLTSNEKNLKHFQHQSPTVPN
        : .:    : ..  .      . .:.. ..: . . :           ...  . . :.
CCDS11 ASPGGPSASRAAW--EACCHPPEVVPGALSADPRPLAV-----------RLEGAGASSPG
     230       240         250       260                  270      

         300       310        320       330       340       350    
pF1KB8 C-LSTMGQNCGAGLNNDSPEA-LEVPSLQDFSVFSTDSCLQLSDAVSPSLPGSLDSPVDI
       : :   :    . : .:   .  . : : :.. :..::::::: ..:::: ::::::: .
CCDS11 CALRGAGGLEPGPLPEDVFSGRQDSPFLPDLNFFAADSCLQLSGGLSPSLQGSLDSPVPF
        280       290       300       310       320       330      

          360       370      
pF1KB8 SADSLDFFTDTLTTIDLQHLNY
       : . :::::.:: .::::    
CCDS11 SEEELDFFTSTLCAIDLQFP  
        340       350        




376 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:49:30 2016 done: Fri Nov  4 16:49:30 2016
 Total Scan time:  3.000 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]