Result of FASTA (omim) for
pF1KB8978
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8978, 374 aa
1>>>pF1KB8978 374 - 374 aa - 374 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9475+/-0.000412; mu= 18.9890+/- 0.026
mean_var=104.0127+/-25.546, 0's: 0 Z-trim(111.9): 607 B-trim: 1139 in 1/53
Lambda= 0.125757
statistics sampled from 19854 (20581) to 19854 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.595), E-opt: 0.2 (0.241), width: 16
Scan time: 7.890
The best scores are: opt bits E(85289)
NP_001116513 (OMIM: 601267) C-C chemokine receptor ( 374) 2513 467.1 2.8e-131
NP_001116868 (OMIM: 601267) C-C chemokine receptor ( 360) 2098 391.8 1.3e-108
XP_011532371 (OMIM: 601267) PREDICTED: C-C chemoki ( 360) 2098 391.8 1.3e-108
NP_000570 (OMIM: 601373,609532,610379,612522) C-C ( 352) 1569 295.8 9.8e-80
NP_001093638 (OMIM: 601373,609532,610379,612522) C ( 352) 1569 295.8 9.8e-80
NP_001286 (OMIM: 601159) C-C chemokine receptor ty ( 355) 1253 238.5 1.8e-62
XP_006713023 (OMIM: 601268) PREDICTED: C-C chemoki ( 355) 1152 220.2 5.9e-57
XP_011531637 (OMIM: 601268) PREDICTED: C-C chemoki ( 355) 1152 220.2 5.9e-57
NP_001828 (OMIM: 601268) C-C chemokine receptor ty ( 355) 1152 220.2 5.9e-57
NP_847899 (OMIM: 601268) C-C chemokine receptor ty ( 355) 1152 220.2 5.9e-57
NP_001158152 (OMIM: 601268) C-C chemokine receptor ( 373) 1152 220.2 6.1e-57
NP_847898 (OMIM: 601268) C-C chemokine receptor ty ( 376) 1152 220.2 6.1e-57
XP_016861175 (OMIM: 601268) PREDICTED: C-C chemoki ( 410) 1152 220.3 6.4e-57
XP_016861174 (OMIM: 601268) PREDICTED: C-C chemoki ( 410) 1152 220.3 6.4e-57
XP_016861176 (OMIM: 604836) PREDICTED: C-C chemoki ( 360) 1099 210.6 4.7e-54
NP_005499 (OMIM: 604836) C-C chemokine receptor ty ( 360) 1099 210.6 4.7e-54
NP_005192 (OMIM: 601834) C-C chemokine receptor ty ( 355) 958 185.0 2.3e-46
NP_001164642 (OMIM: 601470,607339,609423,613784) C ( 355) 917 177.6 4e-44
NP_001328 (OMIM: 601470,607339,609423,613784) CX3C ( 355) 917 177.6 4e-44
NP_001164643 (OMIM: 601470,607339,609423,613784) C ( 355) 917 177.6 4e-44
NP_001164645 (OMIM: 601470,607339,609423,613784) C ( 387) 917 177.6 4.2e-44
XP_016862925 (OMIM: 608379) PREDICTED: C-C chemoki ( 344) 831 161.9 2e-39
NP_003956 (OMIM: 608379) C-C chemokine receptor-li ( 344) 831 161.9 2e-39
XP_011532511 (OMIM: 608379) PREDICTED: C-C chemoki ( 344) 831 161.9 2e-39
XP_011532510 (OMIM: 608379) PREDICTED: C-C chemoki ( 344) 831 161.9 2e-39
NP_001124382 (OMIM: 608379) C-C chemokine receptor ( 356) 831 162.0 2e-39
NP_001287 (OMIM: 602648) atypical chemokine recept ( 384) 782 153.1 1e-36
NP_001288647 (OMIM: 600242) C-C chemokine receptor ( 372) 779 152.5 1.4e-36
NP_001288645 (OMIM: 600242) C-C chemokine receptor ( 372) 779 152.5 1.4e-36
NP_001288646 (OMIM: 600242) C-C chemokine receptor ( 372) 779 152.5 1.4e-36
NP_001829 (OMIM: 600242) C-C chemokine receptor ty ( 378) 779 152.6 1.4e-36
NP_001243298 (OMIM: 604738) C-C chemokine receptor ( 357) 755 148.2 2.8e-35
NP_006632 (OMIM: 604738) C-C chemokine receptor ty ( 357) 755 148.2 2.8e-35
NP_112477 (OMIM: 604738) C-C chemokine receptor ty ( 369) 755 148.2 2.9e-35
XP_011531614 (OMIM: 604738) PREDICTED: C-C chemoki ( 369) 755 148.2 2.9e-35
NP_004358 (OMIM: 601835) C-C chemokine receptor ty ( 374) 735 144.6 3.6e-34
NP_113597 (OMIM: 601835) C-C chemokine receptor ty ( 374) 735 144.6 3.6e-34
NP_001288643 (OMIM: 600242) C-C chemokine receptor ( 315) 731 143.7 5.4e-34
NP_003458 (OMIM: 162643,193670) C-X-C chemokine re ( 352) 710 140.0 8.1e-33
NP_001008540 (OMIM: 162643,193670) C-X-C chemokine ( 356) 710 140.0 8.1e-33
XP_016859479 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 709 139.8 9.3e-33
XP_005246587 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 709 139.8 9.3e-33
NP_001548 (OMIM: 146928) C-X-C chemokine receptor ( 360) 709 139.8 9.3e-33
NP_001161770 (OMIM: 146928) C-X-C chemokine recept ( 360) 709 139.8 9.3e-33
XP_016859480 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 709 139.8 9.3e-33
XP_016859481 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 709 139.8 9.3e-33
XP_016861690 (OMIM: 600552) PREDICTED: chemokine X ( 333) 699 138.0 3.1e-32
XP_016861687 (OMIM: 600552) PREDICTED: chemokine X ( 333) 699 138.0 3.1e-32
XP_016861688 (OMIM: 600552) PREDICTED: chemokine X ( 333) 699 138.0 3.1e-32
XP_016861689 (OMIM: 600552) PREDICTED: chemokine X ( 333) 699 138.0 3.1e-32
>>NP_001116513 (OMIM: 601267) C-C chemokine receptor typ (374 aa)
initn: 2513 init1: 2513 opt: 2513 Z-score: 2477.8 bits: 467.1 E(85289): 2.8e-131
Smith-Waterman score: 2513; 100.0% identity (100.0% similar) in 374 aa overlap (1-374:1-374)
10 20 30 40 50 60
pF1KB8 MLSTSRSRFIRNTNESGEEVTTFFDYDYGAPCHKFDVKQIGAQLLPPLYSLVFIFGFVGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLSTSRSRFIRNTNESGEEVTTFFDYDYGAPCHKFDVKQIGAQLLPPLYSLVFIFGFVGN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 MLVVLILINCKKLKCLTDIYLLNLAISDLLFLITLPLWAHSAANEWVFGNAMCKLFTGLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLVVLILINCKKLKCLTDIYLLNLAISDLLFLITLPLWAHSAANEWVFGNAMCKLFTGLY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 HIGYFGGIFFIILLTIDRYLAIVHAVFALKARTVTFGVVTSVITWLVAVFASVPGIIFTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HIGYFGGIFFIILLTIDRYLAIVHAVFALKARTVTFGVVTSVITWLVAVFASVPGIIFTK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 CQKEDSVYVCGPYFPRGWNNFHTIMRNILGLVLPLLIMVICYSGILKTLLRCRNEKKRHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CQKEDSVYVCGPYFPRGWNNFHTIMRNILGLVLPLLIMVICYSGILKTLLRCRNEKKRHR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 AVRVIFTIMIVYFLFWTPYNIVILLNTFQEFFGLSNCESTSQLDQATQVTETLGMTHCCI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AVRVIFTIMIVYFLFWTPYNIVILLNTFQEFFGLSNCESTSQLDQATQVTETLGMTHCCI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 NPIIYAFVGEKFRSLFHIALGCRIAPLQKPVCGGPGVRPGKNVKVTTQGLLDGRGKGKSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NPIIYAFVGEKFRSLFHIALGCRIAPLQKPVCGGPGVRPGKNVKVTTQGLLDGRGKGKSI
310 320 330 340 350 360
370
pF1KB8 GRAPEASLQDKEGA
::::::::::::::
NP_001 GRAPEASLQDKEGA
370
>>NP_001116868 (OMIM: 601267) C-C chemokine receptor typ (360 aa)
initn: 2098 init1: 2098 opt: 2098 Z-score: 2071.0 bits: 391.8 E(85289): 1.3e-108
Smith-Waterman score: 2098; 98.4% identity (99.1% similar) in 318 aa overlap (1-318:1-318)
10 20 30 40 50 60
pF1KB8 MLSTSRSRFIRNTNESGEEVTTFFDYDYGAPCHKFDVKQIGAQLLPPLYSLVFIFGFVGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLSTSRSRFIRNTNESGEEVTTFFDYDYGAPCHKFDVKQIGAQLLPPLYSLVFIFGFVGN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 MLVVLILINCKKLKCLTDIYLLNLAISDLLFLITLPLWAHSAANEWVFGNAMCKLFTGLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLVVLILINCKKLKCLTDIYLLNLAISDLLFLITLPLWAHSAANEWVFGNAMCKLFTGLY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 HIGYFGGIFFIILLTIDRYLAIVHAVFALKARTVTFGVVTSVITWLVAVFASVPGIIFTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HIGYFGGIFFIILLTIDRYLAIVHAVFALKARTVTFGVVTSVITWLVAVFASVPGIIFTK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 CQKEDSVYVCGPYFPRGWNNFHTIMRNILGLVLPLLIMVICYSGILKTLLRCRNEKKRHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CQKEDSVYVCGPYFPRGWNNFHTIMRNILGLVLPLLIMVICYSGILKTLLRCRNEKKRHR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 AVRVIFTIMIVYFLFWTPYNIVILLNTFQEFFGLSNCESTSQLDQATQVTETLGMTHCCI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AVRVIFTIMIVYFLFWTPYNIVILLNTFQEFFGLSNCESTSQLDQATQVTETLGMTHCCI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 NPIIYAFVGEKFRSLFHIALGCRIAPLQKPVCGGPGVRPGKNVKVTTQGLLDGRGKGKSI
::::::::::::: . .
NP_001 NPIIYAFVGEKFRRYLSVFFRKHITKRFCKQCPVFYRETVDGVTSTNTPSTGEQEVSAGL
310 320 330 340 350 360
>>XP_011532371 (OMIM: 601267) PREDICTED: C-C chemokine r (360 aa)
initn: 2098 init1: 2098 opt: 2098 Z-score: 2071.0 bits: 391.8 E(85289): 1.3e-108
Smith-Waterman score: 2098; 98.4% identity (99.1% similar) in 318 aa overlap (1-318:1-318)
10 20 30 40 50 60
pF1KB8 MLSTSRSRFIRNTNESGEEVTTFFDYDYGAPCHKFDVKQIGAQLLPPLYSLVFIFGFVGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLSTSRSRFIRNTNESGEEVTTFFDYDYGAPCHKFDVKQIGAQLLPPLYSLVFIFGFVGN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 MLVVLILINCKKLKCLTDIYLLNLAISDLLFLITLPLWAHSAANEWVFGNAMCKLFTGLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLVVLILINCKKLKCLTDIYLLNLAISDLLFLITLPLWAHSAANEWVFGNAMCKLFTGLY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 HIGYFGGIFFIILLTIDRYLAIVHAVFALKARTVTFGVVTSVITWLVAVFASVPGIIFTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HIGYFGGIFFIILLTIDRYLAIVHAVFALKARTVTFGVVTSVITWLVAVFASVPGIIFTK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 CQKEDSVYVCGPYFPRGWNNFHTIMRNILGLVLPLLIMVICYSGILKTLLRCRNEKKRHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CQKEDSVYVCGPYFPRGWNNFHTIMRNILGLVLPLLIMVICYSGILKTLLRCRNEKKRHR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 AVRVIFTIMIVYFLFWTPYNIVILLNTFQEFFGLSNCESTSQLDQATQVTETLGMTHCCI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AVRVIFTIMIVYFLFWTPYNIVILLNTFQEFFGLSNCESTSQLDQATQVTETLGMTHCCI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 NPIIYAFVGEKFRSLFHIALGCRIAPLQKPVCGGPGVRPGKNVKVTTQGLLDGRGKGKSI
::::::::::::: . .
XP_011 NPIIYAFVGEKFRRYLSVFFRKHITKRFCKQCPVFYRETVDGVTSTNTPSTGEQEVSAGL
310 320 330 340 350 360
>>NP_000570 (OMIM: 601373,609532,610379,612522) C-C chem (352 aa)
initn: 1571 init1: 890 opt: 1569 Z-score: 1552.5 bits: 295.8 E(85289): 9.8e-80
Smith-Waterman score: 1569; 75.2% identity (90.4% similar) in 311 aa overlap (21-325:7-317)
10 20 30 40 50
pF1KB8 MLSTSRSRFIRNTNESGEEVTTFFDYDY--GAPCHKFDVKQIGAQLLPPLYSLVFIFGFV
. ..: .: . ::.:..::::.:.:::::::::::::::
NP_000 MDYQVSSPIYDINYYTSEPCQKINVKQIAARLLPPLYSLVFIFGFV
10 20 30 40
60 70 80 90 100 110
pF1KB8 GNMLVVLILINCKKLKCLTDIYLLNLAISDLLFLITLPLWAHSAANEWVFGNAMCKLFTG
:::::.:::::::.:: .:::::::::::::.::.:.:.::: :: .: :::.::.:.::
NP_000 GNMLVILILINCKRLKSMTDIYLLNLAISDLFFLLTVPFWAHYAAAQWDFGNTMCQLLTG
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB8 LYHIGYFGGIFFIILLTIDRYLAIVHAVFALKARTVTFGVVTSVITWLVAVFASVPGIIF
:: ::.:.:::::::::::::::.:::::::::::::::::::::::.::::::.:::::
NP_000 LYFIGFFSGIFFIILLTIDRYLAVVHAVFALKARTVTFGVVTSVITWVVAVFASLPGIIF
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB8 TKCQKEDSVYVCGPYFPRG----WNNFHTIMRNILGLVLPLLIMVICYSGILKTLLRCRN
:. ::: :.:. .:: . :.::.:. :::::::::.:::::::::::::::::
NP_000 TRSQKEGLHYTCSSHFPYSQYQFWKNFQTLKIVILGLVLPLLVMVICYSGILKTLLRCRN
170 180 190 200 210 220
240 250 260 270 280 290
pF1KB8 EKKRHRAVRVIFTIMIVYFLFWTPYNIVILLNTFQEFFGLSNCESTSQLDQATQVTETLG
:::::::::.::::::::::::.:::::.:::::::::::.:: :...:::: :::::::
NP_000 EKKRHRAVRLIFTIMIVYFLFWAPYNIVLLLNTFQEFFGLNNCSSSNRLDQAMQVTETLG
230 240 250 260 270 280
300 310 320 330 340 350
pF1KB8 MTHCCINPIIYAFVGEKFRSLFHIALGCRIAPLQKPVCGGPGVRPGKNVKVTTQGLLDGR
:::::::::::::::::::. . . . .::
NP_000 MTHCCINPIIYAFVGEKFRNYLLVFFQKHIAKRFCKCCSIFQQEAPERASSVYTRSTGEQ
290 300 310 320 330 340
360 370
pF1KB8 GKGKSIGRAPEASLQDKEGA
NP_000 EISVGL
350
>>NP_001093638 (OMIM: 601373,609532,610379,612522) C-C c (352 aa)
initn: 1571 init1: 890 opt: 1569 Z-score: 1552.5 bits: 295.8 E(85289): 9.8e-80
Smith-Waterman score: 1569; 75.2% identity (90.4% similar) in 311 aa overlap (21-325:7-317)
10 20 30 40 50
pF1KB8 MLSTSRSRFIRNTNESGEEVTTFFDYDY--GAPCHKFDVKQIGAQLLPPLYSLVFIFGFV
. ..: .: . ::.:..::::.:.:::::::::::::::
NP_001 MDYQVSSPIYDINYYTSEPCQKINVKQIAARLLPPLYSLVFIFGFV
10 20 30 40
60 70 80 90 100 110
pF1KB8 GNMLVVLILINCKKLKCLTDIYLLNLAISDLLFLITLPLWAHSAANEWVFGNAMCKLFTG
:::::.:::::::.:: .:::::::::::::.::.:.:.::: :: .: :::.::.:.::
NP_001 GNMLVILILINCKRLKSMTDIYLLNLAISDLFFLLTVPFWAHYAAAQWDFGNTMCQLLTG
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB8 LYHIGYFGGIFFIILLTIDRYLAIVHAVFALKARTVTFGVVTSVITWLVAVFASVPGIIF
:: ::.:.:::::::::::::::.:::::::::::::::::::::::.::::::.:::::
NP_001 LYFIGFFSGIFFIILLTIDRYLAVVHAVFALKARTVTFGVVTSVITWVVAVFASLPGIIF
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB8 TKCQKEDSVYVCGPYFPRG----WNNFHTIMRNILGLVLPLLIMVICYSGILKTLLRCRN
:. ::: :.:. .:: . :.::.:. :::::::::.:::::::::::::::::
NP_001 TRSQKEGLHYTCSSHFPYSQYQFWKNFQTLKIVILGLVLPLLVMVICYSGILKTLLRCRN
170 180 190 200 210 220
240 250 260 270 280 290
pF1KB8 EKKRHRAVRVIFTIMIVYFLFWTPYNIVILLNTFQEFFGLSNCESTSQLDQATQVTETLG
:::::::::.::::::::::::.:::::.:::::::::::.:: :...:::: :::::::
NP_001 EKKRHRAVRLIFTIMIVYFLFWAPYNIVLLLNTFQEFFGLNNCSSSNRLDQAMQVTETLG
230 240 250 260 270 280
300 310 320 330 340 350
pF1KB8 MTHCCINPIIYAFVGEKFRSLFHIALGCRIAPLQKPVCGGPGVRPGKNVKVTTQGLLDGR
:::::::::::::::::::. . . . .::
NP_001 MTHCCINPIIYAFVGEKFRNYLLVFFQKHIAKRFCKCCSIFQQEAPERASSVYTRSTGEQ
290 300 310 320 330 340
360 370
pF1KB8 GKGKSIGRAPEASLQDKEGA
NP_001 EISVGL
350
>>NP_001286 (OMIM: 601159) C-C chemokine receptor type 1 (355 aa)
initn: 1100 init1: 412 opt: 1253 Z-score: 1242.6 bits: 238.5 E(85289): 1.8e-62
Smith-Waterman score: 1253; 57.7% identity (85.0% similar) in 319 aa overlap (12-325:5-321)
10 20 30 40 50 60
pF1KB8 MLSTSRSRFIRNTNESGEEVTTFFDYDYGAPCHKFDVKQIGAQLLPPLYSLVFIFGFVGN
::.:. ..:: ::: ..::.: . . .:::::::::::::..:.:::
NP_001 METPNTTED-YDTTTEFDYGDATPCQKVNERAFGAQLLPPLYSLVFVIGLVGN
10 20 30 40 50
70 80 90 100 110
pF1KB8 MLVVLILINCKKLKCLTDIYLLNLAISDLLFLITLPLWA-HSAANEWVFGNAMCKLFTGL
.::::.:.. :.:: .:.::::::::::::::.:::.: .. ..::::.::::...:.
NP_001 ILVVLVLVQYKRLKNMTSIYLLNLAISDLLFLFTLPFWIDYKLKDDWVFGDAMCKILSGF
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 YHIGYFGGIFFIILLTIDRYLAIVHAVFALKARTVTFGVVTSVITWLVAVFASVPGIIFT
:. : .. ::::::::::::::::::::::.::::::::.::.: : .:..::.::. :.
NP_001 YYTGLYSEIFFIILLTIDRYLAIVHAVFALRARTVTFGVITSIIIWALAILASMPGLYFS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 KCQKEDSVYVCGPYFP----RGWNNFHTIMRNILGLVLPLLIMVICYSGILKTLLRCRNE
: : : . ..:. .:: : :. :... :..:::::::.:.:::.::.: ::: ::
NP_001 KTQWEFTHHTCSLHFPHESLREWKLFQALKLNLFGLVLPLLVMIICYTGIIKILLRRPNE
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 KKRHRAVRVIFTIMIVYFLFWTPYNIVILLNTFQEFFGLSNCESTSQLDQATQVTETLGM
:: .:::.::.:::..::::::::..::...::.:. .::.. .:: :.::::....
NP_001 KKS-KAVRLIFVIMIIFFLFWTPYNLTILISVFQDFLFTHECEQSRHLDLAVQVTEVIAY
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB8 THCCINPIIYAFVGEKFRSLFHIALGCRIAPLQKPVCGGPGVRPGKNVKVTTQGLLDGRG
::::.::.:::::::.::. .. . :.:
NP_001 THCCVNPVIYAFVGERFRKYLRQLFHRRVAVHLVKWLPFLSVDRLERVSSTSPSTGEHEL
300 310 320 330 340 350
>>XP_006713023 (OMIM: 601268) PREDICTED: C-C chemokine r (355 aa)
initn: 994 init1: 379 opt: 1152 Z-score: 1143.5 bits: 220.2 E(85289): 5.9e-57
Smith-Waterman score: 1152; 54.2% identity (83.7% similar) in 306 aa overlap (21-317:14-317)
10 20 30 40 50 60
pF1KB8 MLSTSRSRFIRNTNESGEEVTTFFDYDYGAPCHKFDVKQIGAQLLPPLYSLVFIFGFVGN
:...: : : :.: :.. . ::..:::::::: :..::
XP_006 MTTSLDTVETFGTTSYYD-DVGLLCEKADTRALMAQFVPPLYSLVFTVGLLGN
10 20 30 40 50
70 80 90 100 110
pF1KB8 MLVVLILINCKKLKCLTDIYLLNLAISDLLFLITLPLWAHSA-ANEWVFGNAMCKLFTGL
..::.:::. ..:. .:.::::::::::::::.:::.: : . ...::::..::::..:.
XP_006 VVVVMILIKYRRLRIMTNIYLLNLAISDLLFLVTLPFWIHYVRGHNWVFGHGMCKLLSGF
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 YHIGYFGGIFFIILLTIDRYLAIVHAVFALKARTVTFGVVTSVITWLVAVFASVPGIIFT
:: : .. ::::::::::::::::::::::.::::::::.::..:: .::.:..: .::
XP_006 YHTGLYSEIFFIILLTIDRYLAIVHAVFALRARTVTFGVITSIVTWGLAVLAALPEFIFY
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 KCQKEDSVYVCGPYFPR----GWNNFHTIMRNILGLVLPLLIMVICYSGILKTLLRCRNE
. .. .:. .:. .: .:::. .:. ::::::.:.:::.::.:::::: .
XP_006 ETEELFEETLCSALYPEDTVYSWRHFHTLRMTIFCLVLPLLVMAICYTGIIKTLLRCPS-
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 KKRHRAVRVIFTIMIVYFLFWTPYNIVILLNTFQEFFGLSNCESTSQLDQATQVTETLGM
::...:.:.::.:: :.:.::::::..:::...: .. ..:: ...:: . :::....
XP_006 KKKYKAIRLIFVIMAVFFIFWTPYNVAILLSSYQSILFGNDCERSKHLDLVMLVTEVIAY
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB8 THCCINPIIYAFVGEKFRS----LFHIALGCRIAPLQKPVCGGPGVRPGKNVKVTTQGLL
.:::.::.:::::::.::. .::
XP_006 SHCCMNPVIYAFVGERFRKYLRHFFHRHLLMHLGRYIPFLPSEKLERTSSVSPSTAEPEL
300 310 320 330 340 350
>>XP_011531637 (OMIM: 601268) PREDICTED: C-C chemokine r (355 aa)
initn: 994 init1: 379 opt: 1152 Z-score: 1143.5 bits: 220.2 E(85289): 5.9e-57
Smith-Waterman score: 1152; 54.2% identity (83.7% similar) in 306 aa overlap (21-317:14-317)
10 20 30 40 50 60
pF1KB8 MLSTSRSRFIRNTNESGEEVTTFFDYDYGAPCHKFDVKQIGAQLLPPLYSLVFIFGFVGN
:...: : : :.: :.. . ::..:::::::: :..::
XP_011 MTTSLDTVETFGTTSYYD-DVGLLCEKADTRALMAQFVPPLYSLVFTVGLLGN
10 20 30 40 50
70 80 90 100 110
pF1KB8 MLVVLILINCKKLKCLTDIYLLNLAISDLLFLITLPLWAHSA-ANEWVFGNAMCKLFTGL
..::.:::. ..:. .:.::::::::::::::.:::.: : . ...::::..::::..:.
XP_011 VVVVMILIKYRRLRIMTNIYLLNLAISDLLFLVTLPFWIHYVRGHNWVFGHGMCKLLSGF
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 YHIGYFGGIFFIILLTIDRYLAIVHAVFALKARTVTFGVVTSVITWLVAVFASVPGIIFT
:: : .. ::::::::::::::::::::::.::::::::.::..:: .::.:..: .::
XP_011 YHTGLYSEIFFIILLTIDRYLAIVHAVFALRARTVTFGVITSIVTWGLAVLAALPEFIFY
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 KCQKEDSVYVCGPYFPR----GWNNFHTIMRNILGLVLPLLIMVICYSGILKTLLRCRNE
. .. .:. .:. .: .:::. .:. ::::::.:.:::.::.:::::: .
XP_011 ETEELFEETLCSALYPEDTVYSWRHFHTLRMTIFCLVLPLLVMAICYTGIIKTLLRCPS-
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 KKRHRAVRVIFTIMIVYFLFWTPYNIVILLNTFQEFFGLSNCESTSQLDQATQVTETLGM
::...:.:.::.:: :.:.::::::..:::...: .. ..:: ...:: . :::....
XP_011 KKKYKAIRLIFVIMAVFFIFWTPYNVAILLSSYQSILFGNDCERSKHLDLVMLVTEVIAY
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB8 THCCINPIIYAFVGEKFRS----LFHIALGCRIAPLQKPVCGGPGVRPGKNVKVTTQGLL
.:::.::.:::::::.::. .::
XP_011 SHCCMNPVIYAFVGERFRKYLRHFFHRHLLMHLGRYIPFLPSEKLERTSSVSPSTAEPEL
300 310 320 330 340 350
>>NP_001828 (OMIM: 601268) C-C chemokine receptor type 3 (355 aa)
initn: 994 init1: 379 opt: 1152 Z-score: 1143.5 bits: 220.2 E(85289): 5.9e-57
Smith-Waterman score: 1152; 54.2% identity (83.7% similar) in 306 aa overlap (21-317:14-317)
10 20 30 40 50 60
pF1KB8 MLSTSRSRFIRNTNESGEEVTTFFDYDYGAPCHKFDVKQIGAQLLPPLYSLVFIFGFVGN
:...: : : :.: :.. . ::..:::::::: :..::
NP_001 MTTSLDTVETFGTTSYYD-DVGLLCEKADTRALMAQFVPPLYSLVFTVGLLGN
10 20 30 40 50
70 80 90 100 110
pF1KB8 MLVVLILINCKKLKCLTDIYLLNLAISDLLFLITLPLWAHSA-ANEWVFGNAMCKLFTGL
..::.:::. ..:. .:.::::::::::::::.:::.: : . ...::::..::::..:.
NP_001 VVVVMILIKYRRLRIMTNIYLLNLAISDLLFLVTLPFWIHYVRGHNWVFGHGMCKLLSGF
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 YHIGYFGGIFFIILLTIDRYLAIVHAVFALKARTVTFGVVTSVITWLVAVFASVPGIIFT
:: : .. ::::::::::::::::::::::.::::::::.::..:: .::.:..: .::
NP_001 YHTGLYSEIFFIILLTIDRYLAIVHAVFALRARTVTFGVITSIVTWGLAVLAALPEFIFY
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 KCQKEDSVYVCGPYFPR----GWNNFHTIMRNILGLVLPLLIMVICYSGILKTLLRCRNE
. .. .:. .:. .: .:::. .:. ::::::.:.:::.::.:::::: .
NP_001 ETEELFEETLCSALYPEDTVYSWRHFHTLRMTIFCLVLPLLVMAICYTGIIKTLLRCPS-
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 KKRHRAVRVIFTIMIVYFLFWTPYNIVILLNTFQEFFGLSNCESTSQLDQATQVTETLGM
::...:.:.::.:: :.:.::::::..:::...: .. ..:: ...:: . :::....
NP_001 KKKYKAIRLIFVIMAVFFIFWTPYNVAILLSSYQSILFGNDCERSKHLDLVMLVTEVIAY
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB8 THCCINPIIYAFVGEKFRS----LFHIALGCRIAPLQKPVCGGPGVRPGKNVKVTTQGLL
.:::.::.:::::::.::. .::
NP_001 SHCCMNPVIYAFVGERFRKYLRHFFHRHLLMHLGRYIPFLPSEKLERTSSVSPSTAEPEL
300 310 320 330 340 350
>>NP_847899 (OMIM: 601268) C-C chemokine receptor type 3 (355 aa)
initn: 994 init1: 379 opt: 1152 Z-score: 1143.5 bits: 220.2 E(85289): 5.9e-57
Smith-Waterman score: 1152; 54.2% identity (83.7% similar) in 306 aa overlap (21-317:14-317)
10 20 30 40 50 60
pF1KB8 MLSTSRSRFIRNTNESGEEVTTFFDYDYGAPCHKFDVKQIGAQLLPPLYSLVFIFGFVGN
:...: : : :.: :.. . ::..:::::::: :..::
NP_847 MTTSLDTVETFGTTSYYD-DVGLLCEKADTRALMAQFVPPLYSLVFTVGLLGN
10 20 30 40 50
70 80 90 100 110
pF1KB8 MLVVLILINCKKLKCLTDIYLLNLAISDLLFLITLPLWAHSA-ANEWVFGNAMCKLFTGL
..::.:::. ..:. .:.::::::::::::::.:::.: : . ...::::..::::..:.
NP_847 VVVVMILIKYRRLRIMTNIYLLNLAISDLLFLVTLPFWIHYVRGHNWVFGHGMCKLLSGF
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 YHIGYFGGIFFIILLTIDRYLAIVHAVFALKARTVTFGVVTSVITWLVAVFASVPGIIFT
:: : .. ::::::::::::::::::::::.::::::::.::..:: .::.:..: .::
NP_847 YHTGLYSEIFFIILLTIDRYLAIVHAVFALRARTVTFGVITSIVTWGLAVLAALPEFIFY
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 KCQKEDSVYVCGPYFPR----GWNNFHTIMRNILGLVLPLLIMVICYSGILKTLLRCRNE
. .. .:. .:. .: .:::. .:. ::::::.:.:::.::.:::::: .
NP_847 ETEELFEETLCSALYPEDTVYSWRHFHTLRMTIFCLVLPLLVMAICYTGIIKTLLRCPS-
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 KKRHRAVRVIFTIMIVYFLFWTPYNIVILLNTFQEFFGLSNCESTSQLDQATQVTETLGM
::...:.:.::.:: :.:.::::::..:::...: .. ..:: ...:: . :::....
NP_847 KKKYKAIRLIFVIMAVFFIFWTPYNVAILLSSYQSILFGNDCERSKHLDLVMLVTEVIAY
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB8 THCCINPIIYAFVGEKFRS----LFHIALGCRIAPLQKPVCGGPGVRPGKNVKVTTQGLL
.:::.::.:::::::.::. .::
NP_847 SHCCMNPVIYAFVGERFRKYLRHFFHRHLLMHLGRYIPFLPSEKLERTSSVSPSTAEPEL
300 310 320 330 340 350
374 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:47:49 2016 done: Fri Nov 4 16:47:50 2016
Total Scan time: 7.890 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]