Result of FASTA (omim) for
pF1KB8976
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8976, 372 aa
1>>>pF1KB8976 372 - 372 aa - 372 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6113+/-0.000443; mu= 20.4766+/- 0.027
mean_var=117.6466+/-29.565, 0's: 0 Z-trim(110.8): 621 B-trim: 910 in 1/52
Lambda= 0.118245
statistics sampled from 18448 (19208) to 18448 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.584), E-opt: 0.2 (0.225), width: 16
Scan time: 7.530
The best scores are: opt bits E(85289)
NP_001707 (OMIM: 601613) C-X-C chemokine receptor ( 372) 2496 437.7 2e-122
NP_116743 (OMIM: 601613) C-X-C chemokine receptor ( 327) 2184 384.4 2e-106
NP_001495 (OMIM: 300574) C-X-C chemokine receptor ( 368) 845 156.1 1.2e-37
XP_005262313 (OMIM: 300574) PREDICTED: C-X-C chemo ( 378) 845 156.1 1.2e-37
NP_001136269 (OMIM: 300574) C-X-C chemokine recept ( 415) 845 156.1 1.3e-37
XP_016884924 (OMIM: 300574) PREDICTED: C-X-C chemo ( 415) 845 156.1 1.3e-37
XP_005246587 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 804 149.0 1.5e-35
XP_016859480 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 804 149.0 1.5e-35
XP_016859479 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 804 149.0 1.5e-35
NP_001548 (OMIM: 146928) C-X-C chemokine receptor ( 360) 804 149.0 1.5e-35
XP_016859481 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 804 149.0 1.5e-35
NP_001161770 (OMIM: 146928) C-X-C chemokine recept ( 360) 804 149.0 1.5e-35
NP_001288646 (OMIM: 600242) C-C chemokine receptor ( 372) 788 146.3 1e-34
NP_001288647 (OMIM: 600242) C-C chemokine receptor ( 372) 788 146.3 1e-34
NP_001288645 (OMIM: 600242) C-C chemokine receptor ( 372) 788 146.3 1e-34
NP_001829 (OMIM: 600242) C-C chemokine receptor ty ( 378) 788 146.3 1.1e-34
NP_000625 (OMIM: 146929,609423) C-X-C chemokine re ( 350) 754 140.5 5.6e-33
NP_001288643 (OMIM: 600242) C-C chemokine receptor ( 315) 741 138.2 2.5e-32
NP_003458 (OMIM: 162643,193670) C-X-C chemokine re ( 352) 712 133.3 8.1e-31
NP_001008540 (OMIM: 162643,193670) C-X-C chemokine ( 356) 712 133.3 8.2e-31
NP_006632 (OMIM: 604738) C-C chemokine receptor ty ( 357) 687 129.1 1.6e-29
NP_001243298 (OMIM: 604738) C-C chemokine receptor ( 357) 687 129.1 1.6e-29
XP_011531614 (OMIM: 604738) PREDICTED: C-C chemoki ( 369) 687 129.1 1.6e-29
NP_112477 (OMIM: 604738) C-C chemokine receptor ty ( 369) 687 129.1 1.6e-29
NP_004358 (OMIM: 601835) C-C chemokine receptor ty ( 374) 666 125.5 1.9e-28
NP_113597 (OMIM: 601835) C-C chemokine receptor ty ( 374) 666 125.5 1.9e-28
XP_016861176 (OMIM: 604836) PREDICTED: C-C chemoki ( 360) 655 123.6 6.9e-28
NP_005499 (OMIM: 604836) C-C chemokine receptor ty ( 360) 655 123.6 6.9e-28
NP_005192 (OMIM: 601834) C-C chemokine receptor ty ( 355) 644 121.7 2.5e-27
XP_011532371 (OMIM: 601267) PREDICTED: C-C chemoki ( 360) 628 119.0 1.7e-26
NP_001116868 (OMIM: 601267) C-C chemokine receptor ( 360) 628 119.0 1.7e-26
NP_001093638 (OMIM: 601373,609532,610379,612522) C ( 352) 624 118.3 2.7e-26
NP_000570 (OMIM: 601373,609532,610379,612522) C-C ( 352) 624 118.3 2.7e-26
NP_001116513 (OMIM: 601267) C-C chemokine receptor ( 374) 623 118.2 3.1e-26
NP_057686 (OMIM: 600240) C-C chemokine receptor ty ( 362) 621 117.8 3.9e-26
NP_001287 (OMIM: 602648) atypical chemokine recept ( 384) 619 117.5 5.1e-26
NP_001286 (OMIM: 601159) C-C chemokine receptor ty ( 355) 613 116.5 9.9e-26
NP_847899 (OMIM: 601268) C-C chemokine receptor ty ( 355) 607 115.4 2e-25
XP_006713023 (OMIM: 601268) PREDICTED: C-C chemoki ( 355) 607 115.4 2e-25
NP_001828 (OMIM: 601268) C-C chemokine receptor ty ( 355) 607 115.4 2e-25
XP_011531637 (OMIM: 601268) PREDICTED: C-C chemoki ( 355) 607 115.4 2e-25
NP_001158152 (OMIM: 601268) C-C chemokine receptor ( 373) 607 115.5 2.1e-25
NP_847898 (OMIM: 601268) C-C chemokine receptor ty ( 376) 607 115.5 2.1e-25
XP_016861175 (OMIM: 601268) PREDICTED: C-C chemoki ( 410) 607 115.5 2.2e-25
XP_016861174 (OMIM: 601268) PREDICTED: C-C chemoki ( 410) 607 115.5 2.2e-25
NP_033611 (OMIM: 106165,145500,267430) type-1 angi ( 359) 555 106.6 9.5e-23
NP_000676 (OMIM: 106165,145500,267430) type-1 angi ( 359) 555 106.6 9.5e-23
NP_114438 (OMIM: 106165,145500,267430) type-1 angi ( 388) 555 106.6 9.9e-23
NP_004826 (OMIM: 106165,145500,267430) type-1 angi ( 394) 555 106.6 1e-22
NP_114038 (OMIM: 106165,145500,267430) type-1 angi ( 394) 555 106.6 1e-22
>>NP_001707 (OMIM: 601613) C-X-C chemokine receptor type (372 aa)
initn: 2496 init1: 2496 opt: 2496 Z-score: 2318.8 bits: 437.7 E(85289): 2e-122
Smith-Waterman score: 2496; 100.0% identity (100.0% similar) in 372 aa overlap (1-372:1-372)
10 20 30 40 50 60
pF1KB8 MNYPLTLEMDLENLEDLFWELDRLDNYNDTSLVENHLCPATEGPLMASFKAVFVPVAYSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNYPLTLEMDLENLEDLFWELDRLDNYNDTSLVENHLCPATEGPLMASFKAVFVPVAYSL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 IFLLGVIGNVLVLVILERHRQTRSSTETFLFHLAVADLLLVFILPFAVAEGSVGWVLGTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IFLLGVIGNVLVLVILERHRQTRSSTETFLFHLAVADLLLVFILPFAVAEGSVGWVLGTF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LCKTVIALHKVNFYCSSLLLACIAVDRYLAIVHAVHAYRHRRLLSIHITCGTIWLVGFLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LCKTVIALHKVNFYCSSLLLACIAVDRYLAIVHAVHAYRHRRLLSIHITCGTIWLVGFLL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 ALPEILFAKVSQGHHNNSLPRCTFSQENQAETHAWFTSRFLYHVAGFLLPMLVMGWCYVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALPEILFAKVSQGHHNNSLPRCTFSQENQAETHAWFTSRFLYHVAGFLLPMLVMGWCYVG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 VVHRLRQAQRRPQRQKAVRVAILVTSIFFLCWSPYHIVIFLDTLARLKAVDNTCKLNGSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVHRLRQAQRRPQRQKAVRVAILVTSIFFLCWSPYHIVIFLDTLARLKAVDNTCKLNGSL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 PVAITMCEFLGLAHCCLNPMLYTFAGVKFRSDLSRLLTKLGCTGPASLCQLFPSWRRSSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PVAITMCEFLGLAHCCLNPMLYTFAGVKFRSDLSRLLTKLGCTGPASLCQLFPSWRRSSL
310 320 330 340 350 360
370
pF1KB8 SESENATSLTTF
::::::::::::
NP_001 SESENATSLTTF
370
>>NP_116743 (OMIM: 601613) C-X-C chemokine receptor type (327 aa)
initn: 2184 init1: 2184 opt: 2184 Z-score: 2031.7 bits: 384.4 E(85289): 2e-106
Smith-Waterman score: 2184; 100.0% identity (100.0% similar) in 327 aa overlap (46-372:1-327)
20 30 40 50 60 70
pF1KB8 DLFWELDRLDNYNDTSLVENHLCPATEGPLMASFKAVFVPVAYSLIFLLGVIGNVLVLVI
::::::::::::::::::::::::::::::
NP_116 MASFKAVFVPVAYSLIFLLGVIGNVLVLVI
10 20 30
80 90 100 110 120 130
pF1KB8 LERHRQTRSSTETFLFHLAVADLLLVFILPFAVAEGSVGWVLGTFLCKTVIALHKVNFYC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 LERHRQTRSSTETFLFHLAVADLLLVFILPFAVAEGSVGWVLGTFLCKTVIALHKVNFYC
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB8 SSLLLACIAVDRYLAIVHAVHAYRHRRLLSIHITCGTIWLVGFLLALPEILFAKVSQGHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 SSLLLACIAVDRYLAIVHAVHAYRHRRLLSIHITCGTIWLVGFLLALPEILFAKVSQGHH
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB8 NNSLPRCTFSQENQAETHAWFTSRFLYHVAGFLLPMLVMGWCYVGVVHRLRQAQRRPQRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 NNSLPRCTFSQENQAETHAWFTSRFLYHVAGFLLPMLVMGWCYVGVVHRLRQAQRRPQRQ
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB8 KAVRVAILVTSIFFLCWSPYHIVIFLDTLARLKAVDNTCKLNGSLPVAITMCEFLGLAHC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 KAVRVAILVTSIFFLCWSPYHIVIFLDTLARLKAVDNTCKLNGSLPVAITMCEFLGLAHC
220 230 240 250 260 270
320 330 340 350 360 370
pF1KB8 CLNPMLYTFAGVKFRSDLSRLLTKLGCTGPASLCQLFPSWRRSSLSESENATSLTTF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 CLNPMLYTFAGVKFRSDLSRLLTKLGCTGPASLCQLFPSWRRSSLSESENATSLTTF
280 290 300 310 320
>>NP_001495 (OMIM: 300574) C-X-C chemokine receptor type (368 aa)
initn: 788 init1: 444 opt: 845 Z-score: 796.7 bits: 156.1 E(85289): 1.2e-37
Smith-Waterman score: 845; 40.9% identity (68.3% similar) in 357 aa overlap (14-367:20-364)
10 20 30 40 50
pF1KB8 MNYPLTLEMDLENLEDLFWELDRLDNYNDTSLVENHLCPATEGPLMASFKAVFV
::.. : .: .: : . :: . .: .:.
NP_001 MVLEVSDHQVLNDAEVAALLENFSSSYDYGENESD-SCCTSPPCPQ---DFSLNFDRAFL
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 PVAYSLIFLLGVIGNVLVLVILERHRQTRSSTETFLFHLAVADLLLVFILPFAVAEGSVG
:. :::.::::..:: : ..: .: . :::.:::.:::::: :::. ::. .....:
NP_001 PALYSLLFLLGLLGNGAVAAVLLSRRTALSSTDTFLLHLAVADTLLVLTLPLWAVDAAVQ
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 WVLGTFLCKTVIALHKVNFYCSSLLLACIAVDRYLAIVHAVHAYRHRRLLSIHITCGTIW
::.:. :::.. :: ..::: ..::::::. :::: ::::.. ::. . .:: ..:
NP_001 WVFGSGLCKVAGALFNINFYAGALLLACISFDRYLNIVHATQLYRRGPPARVTLTCLAVW
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 LVGFLLALPEILFAKVSQGHHNNSL--PRCTFSQENQAETHAWFTSRFLYHVAGFLLPML
. .:.:::...: .. ::.. : .: .. . ..: . : : :::::::.:
NP_001 GLCLLFALPDFIFLSA---HHDERLNATHCQYNFPQVGRT----ALRVLQLVAGFLLPLL
180 190 200 210 220
240 250 260 270 280 290
pF1KB8 VMGWCYVGVVHRLRQAQRRPQRQKAVRVAILVTSIFFLCWSPYHIVIFLDTLARLKAVDN
::..::. .. : ..: .: .:.:....:. : :::.:::.:...: : : :.
NP_001 VMAYCYAHILAVL-LVSRGQRRLRAMRLVVVVVVAFALCWTPYHLVVLVDILMDLGALAR
230 240 250 260 270 280
300 310 320 330 340 350
pF1KB8 TCKLNGSLPVAITMCEFLGLAHCCLNPMLYTFAGVKFRSDLSRLLTKLGCTGPASLCQLF
.: .. . :: .. :: ::::::.::.:.::::: . :: .::: . .: .
NP_001 NCGRESRVDVAKSVTSGLGYMHCCLNPLLYAFVGVKFRERMWMLLLRLGCPNQRGLQRQP
290 300 310 320 330 340
360 370
pF1KB8 PSWRR-SSLSESENATSLTTF
: :: :: ::. .:.
NP_001 SSSRRDSSWSETSEASYSGL
350 360
>>XP_005262313 (OMIM: 300574) PREDICTED: C-X-C chemokine (378 aa)
initn: 788 init1: 444 opt: 845 Z-score: 796.6 bits: 156.1 E(85289): 1.2e-37
Smith-Waterman score: 845; 40.9% identity (68.3% similar) in 357 aa overlap (14-367:30-374)
10 20 30 40
pF1KB8 MNYPLTLEMDLENLEDLFWELDRLDNYNDTSLVENHLCPATEGP
::.. : .: .: : . ::
XP_005 MPGLAHSPGSPQGWVSDHQVLNDAEVAALLENFSSSYDYGENESD-SCCTSPPCPQ---D
10 20 30 40 50
50 60 70 80 90 100
pF1KB8 LMASFKAVFVPVAYSLIFLLGVIGNVLVLVILERHRQTRSSTETFLFHLAVADLLLVFIL
. .: .:.:. :::.::::..:: : ..: .: . :::.:::.:::::: :::. :
XP_005 FSLNFDRAFLPALYSLLFLLGLLGNGAVAAVLLSRRTALSSTDTFLLHLAVADTLLVLTL
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB8 PFAVAEGSVGWVLGTFLCKTVIALHKVNFYCSSLLLACIAVDRYLAIVHAVHAYRHRRLL
:. .....: ::.:. :::.. :: ..::: ..::::::. :::: ::::.. ::.
XP_005 PLWAVDAAVQWVFGSGLCKVAGALFNINFYAGALLLACISFDRYLNIVHATQLYRRGPPA
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB8 SIHITCGTIWLVGFLLALPEILFAKVSQGHHNNSL--PRCTFSQENQAETHAWFTSRFLY
. .:: ..: . .:.:::...: .. ::.. : .: .. . ..: . : :
XP_005 RVTLTCLAVWGLCLLFALPDFIFLSA---HHDERLNATHCQYNFPQVGRT----ALRVLQ
180 190 200 210 220
230 240 250 260 270 280
pF1KB8 HVAGFLLPMLVMGWCYVGVVHRLRQAQRRPQRQKAVRVAILVTSIFFLCWSPYHIVIFLD
:::::::.:::..::. .. : ..: .: .:.:....:. : :::.:::.:...:
XP_005 LVAGFLLPLLVMAYCYAHILAVL-LVSRGQRRLRAMRLVVVVVVAFALCWTPYHLVVLVD
230 240 250 260 270 280
290 300 310 320 330 340
pF1KB8 TLARLKAVDNTCKLNGSLPVAITMCEFLGLAHCCLNPMLYTFAGVKFRSDLSRLLTKLGC
: : :. .: .. . :: .. :: ::::::.::.:.::::: . :: .:::
XP_005 ILMDLGALARNCGRESRVDVAKSVTSGLGYMHCCLNPLLYAFVGVKFRERMWMLLLRLGC
290 300 310 320 330 340
350 360 370
pF1KB8 TGPASLCQLFPSWRR-SSLSESENATSLTTF
. .: . : :: :: ::. .:.
XP_005 PNQRGLQRQPSSSRRDSSWSETSEASYSGL
350 360 370
>>NP_001136269 (OMIM: 300574) C-X-C chemokine receptor t (415 aa)
initn: 788 init1: 444 opt: 845 Z-score: 796.2 bits: 156.1 E(85289): 1.3e-37
Smith-Waterman score: 845; 40.9% identity (68.3% similar) in 357 aa overlap (14-367:67-411)
10 20 30 40
pF1KB8 MNYPLTLEMDLENLEDLFWELDRLDNYNDTSLVENHLCPATEG
::.. : .: .: : . ::
NP_001 PGLYTAPSSPFPPSQVSDHQVLNDAEVAALLENFSSSYDYGENESD-SCCTSPPCPQ---
40 50 60 70 80 90
50 60 70 80 90 100
pF1KB8 PLMASFKAVFVPVAYSLIFLLGVIGNVLVLVILERHRQTRSSTETFLFHLAVADLLLVFI
. .: .:.:. :::.::::..:: : ..: .: . :::.:::.:::::: :::.
NP_001 DFSLNFDRAFLPALYSLLFLLGLLGNGAVAAVLLSRRTALSSTDTFLLHLAVADTLLVLT
100 110 120 130 140 150
110 120 130 140 150 160
pF1KB8 LPFAVAEGSVGWVLGTFLCKTVIALHKVNFYCSSLLLACIAVDRYLAIVHAVHAYRHRRL
::. .....: ::.:. :::.. :: ..::: ..::::::. :::: ::::.. ::.
NP_001 LPLWAVDAAVQWVFGSGLCKVAGALFNINFYAGALLLACISFDRYLNIVHATQLYRRGPP
160 170 180 190 200 210
170 180 190 200 210 220
pF1KB8 LSIHITCGTIWLVGFLLALPEILFAKVSQGHHNNSL--PRCTFSQENQAETHAWFTSRFL
. .:: ..: . .:.:::...: .. ::.. : .: .. . ..: . : :
NP_001 ARVTLTCLAVWGLCLLFALPDFIFLSA---HHDERLNATHCQYNFPQVGRT----ALRVL
220 230 240 250 260
230 240 250 260 270 280
pF1KB8 YHVAGFLLPMLVMGWCYVGVVHRLRQAQRRPQRQKAVRVAILVTSIFFLCWSPYHIVIFL
:::::::.:::..::. .. : ..: .: .:.:....:. : :::.:::.:...
NP_001 QLVAGFLLPLLVMAYCYAHILAVL-LVSRGQRRLRAMRLVVVVVVAFALCWTPYHLVVLV
270 280 290 300 310 320
290 300 310 320 330 340
pF1KB8 DTLARLKAVDNTCKLNGSLPVAITMCEFLGLAHCCLNPMLYTFAGVKFRSDLSRLLTKLG
: : : :. .: .. . :: .. :: ::::::.::.:.::::: . :: .::
NP_001 DILMDLGALARNCGRESRVDVAKSVTSGLGYMHCCLNPLLYAFVGVKFRERMWMLLLRLG
330 340 350 360 370 380
350 360 370
pF1KB8 CTGPASLCQLFPSWRR-SSLSESENATSLTTF
: . .: . : :: :: ::. .:.
NP_001 CPNQRGLQRQPSSSRRDSSWSETSEASYSGL
390 400 410
>>XP_016884924 (OMIM: 300574) PREDICTED: C-X-C chemokine (415 aa)
initn: 788 init1: 444 opt: 845 Z-score: 796.2 bits: 156.1 E(85289): 1.3e-37
Smith-Waterman score: 845; 40.9% identity (68.3% similar) in 357 aa overlap (14-367:67-411)
10 20 30 40
pF1KB8 MNYPLTLEMDLENLEDLFWELDRLDNYNDTSLVENHLCPATEG
::.. : .: .: : . ::
XP_016 PGLYTAPSSPFPPSQVSDHQVLNDAEVAALLENFSSSYDYGENESD-SCCTSPPCPQ---
40 50 60 70 80 90
50 60 70 80 90 100
pF1KB8 PLMASFKAVFVPVAYSLIFLLGVIGNVLVLVILERHRQTRSSTETFLFHLAVADLLLVFI
. .: .:.:. :::.::::..:: : ..: .: . :::.:::.:::::: :::.
XP_016 DFSLNFDRAFLPALYSLLFLLGLLGNGAVAAVLLSRRTALSSTDTFLLHLAVADTLLVLT
100 110 120 130 140 150
110 120 130 140 150 160
pF1KB8 LPFAVAEGSVGWVLGTFLCKTVIALHKVNFYCSSLLLACIAVDRYLAIVHAVHAYRHRRL
::. .....: ::.:. :::.. :: ..::: ..::::::. :::: ::::.. ::.
XP_016 LPLWAVDAAVQWVFGSGLCKVAGALFNINFYAGALLLACISFDRYLNIVHATQLYRRGPP
160 170 180 190 200 210
170 180 190 200 210 220
pF1KB8 LSIHITCGTIWLVGFLLALPEILFAKVSQGHHNNSL--PRCTFSQENQAETHAWFTSRFL
. .:: ..: . .:.:::...: .. ::.. : .: .. . ..: . : :
XP_016 ARVTLTCLAVWGLCLLFALPDFIFLSA---HHDERLNATHCQYNFPQVGRT----ALRVL
220 230 240 250 260
230 240 250 260 270 280
pF1KB8 YHVAGFLLPMLVMGWCYVGVVHRLRQAQRRPQRQKAVRVAILVTSIFFLCWSPYHIVIFL
:::::::.:::..::. .. : ..: .: .:.:....:. : :::.:::.:...
XP_016 QLVAGFLLPLLVMAYCYAHILAVL-LVSRGQRRLRAMRLVVVVVVAFALCWTPYHLVVLV
270 280 290 300 310 320
290 300 310 320 330 340
pF1KB8 DTLARLKAVDNTCKLNGSLPVAITMCEFLGLAHCCLNPMLYTFAGVKFRSDLSRLLTKLG
: : : :. .: .. . :: .. :: ::::::.::.:.::::: . :: .::
XP_016 DILMDLGALARNCGRESRVDVAKSVTSGLGYMHCCLNPLLYAFVGVKFRERMWMLLLRLG
330 340 350 360 370 380
350 360 370
pF1KB8 CTGPASLCQLFPSWRR-SSLSESENATSLTTF
: . .: . : :: :: ::. .:.
XP_016 CPNQRGLQRQPSSSRRDSSWSETSEASYSGL
390 400 410
>>XP_005246587 (OMIM: 146928) PREDICTED: C-X-C chemokine (360 aa)
initn: 777 init1: 372 opt: 804 Z-score: 759.0 bits: 149.0 E(85289): 1.5e-35
Smith-Waterman score: 810; 38.3% identity (68.5% similar) in 368 aa overlap (7-372:4-360)
10 20 30 40 50
pF1KB8 MNYPLTLEMDLENLEDLFWELDRLDNYNDTSLVENHLCPATEG-PLMASFKAVFVPVAYS
..:. ...:: ::. . :.::. .: . : :. : .. :: . :.
XP_005 MEDFNMESDSFED-FWKGEDLSNYSYSSTLPPFLLDAAPCEPESLEINKYFVVIIYA
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 LIFLLGVIGNVLVLVILERHRQTRSSTETFLFHLAVADLLLVFILPFAVAEGSVGWVLGT
:.:::...:: ::.... : :: :...:..::.::::... ::. .: ::..::
XP_005 LVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASKVNGWIFGT
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 FLCKTVIALHKVNFYCSSLLLACIAVDRYLAIVHAVHAYRHRRLLSIHITCGTIWLVGFL
::::.: :..:::: . ::::::.::::::::::... ..: : ... : .:: ...:
XP_005 FLCKVVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQKRYL-VKFICLSIWGLSLL
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 LALPEILFAKVSQGHHNNSLPRCTFSQENQAETHAW-FTSRFLYHVAGFLLPMLVMGWCY
:::: .:: .. . .: : : .. :. : : . :.: . ::..:.:.: .::
XP_005 LALPVLLFRRTV--YSSNVSPACYEDMGNN--TANWRMLLRILPQSFGFIVPLLIMLFCY
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 VGVVHRLRQAQRRPQRQKAVRVAILVTSIFFLCWSPYHIVIFLDTLARLKAVDNTCKLNG
... : .:. :...:.:: . :. ::.::: ::..:.. ::: : .....::. .
XP_005 GFTLRTLFKAHM-GQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQETCERRN
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB8 SLPVAITMCEFLGLAHCCLNPMLYTFAGVKFRSDLSRLLTKLGCTGPASLCQLFPSWRRS
. :. :.::. : ::::..:.: : ::: : ..:. : . :: :. :
XP_005 HIDRALDATEILGILHSCLNPLIYAFIGQKFRHGLLKILAIHGLISKDSL----PKDSRP
300 310 320 330 340
360 370
pF1KB8 SLSESENATSLTTF
:. : .. . ::.
XP_005 SFVGSSSGHTSTTL
350 360
>>XP_016859480 (OMIM: 146928) PREDICTED: C-X-C chemokine (360 aa)
initn: 777 init1: 372 opt: 804 Z-score: 759.0 bits: 149.0 E(85289): 1.5e-35
Smith-Waterman score: 810; 38.3% identity (68.5% similar) in 368 aa overlap (7-372:4-360)
10 20 30 40 50
pF1KB8 MNYPLTLEMDLENLEDLFWELDRLDNYNDTSLVENHLCPATEG-PLMASFKAVFVPVAYS
..:. ...:: ::. . :.::. .: . : :. : .. :: . :.
XP_016 MEDFNMESDSFED-FWKGEDLSNYSYSSTLPPFLLDAAPCEPESLEINKYFVVIIYA
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 LIFLLGVIGNVLVLVILERHRQTRSSTETFLFHLAVADLLLVFILPFAVAEGSVGWVLGT
:.:::...:: ::.... : :: :...:..::.::::... ::. .: ::..::
XP_016 LVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASKVNGWIFGT
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 FLCKTVIALHKVNFYCSSLLLACIAVDRYLAIVHAVHAYRHRRLLSIHITCGTIWLVGFL
::::.: :..:::: . ::::::.::::::::::... ..: : ... : .:: ...:
XP_016 FLCKVVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQKRYL-VKFICLSIWGLSLL
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 LALPEILFAKVSQGHHNNSLPRCTFSQENQAETHAW-FTSRFLYHVAGFLLPMLVMGWCY
:::: .:: .. . .: : : .. :. : : . :.: . ::..:.:.: .::
XP_016 LALPVLLFRRTV--YSSNVSPACYEDMGNN--TANWRMLLRILPQSFGFIVPLLIMLFCY
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 VGVVHRLRQAQRRPQRQKAVRVAILVTSIFFLCWSPYHIVIFLDTLARLKAVDNTCKLNG
... : .:. :...:.:: . :. ::.::: ::..:.. ::: : .....::. .
XP_016 GFTLRTLFKAHM-GQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQETCERRN
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB8 SLPVAITMCEFLGLAHCCLNPMLYTFAGVKFRSDLSRLLTKLGCTGPASLCQLFPSWRRS
. :. :.::. : ::::..:.: : ::: : ..:. : . :: :. :
XP_016 HIDRALDATEILGILHSCLNPLIYAFIGQKFRHGLLKILAIHGLISKDSL----PKDSRP
300 310 320 330 340
360 370
pF1KB8 SLSESENATSLTTF
:. : .. . ::.
XP_016 SFVGSSSGHTSTTL
350 360
>>XP_016859479 (OMIM: 146928) PREDICTED: C-X-C chemokine (360 aa)
initn: 777 init1: 372 opt: 804 Z-score: 759.0 bits: 149.0 E(85289): 1.5e-35
Smith-Waterman score: 810; 38.3% identity (68.5% similar) in 368 aa overlap (7-372:4-360)
10 20 30 40 50
pF1KB8 MNYPLTLEMDLENLEDLFWELDRLDNYNDTSLVENHLCPATEG-PLMASFKAVFVPVAYS
..:. ...:: ::. . :.::. .: . : :. : .. :: . :.
XP_016 MEDFNMESDSFED-FWKGEDLSNYSYSSTLPPFLLDAAPCEPESLEINKYFVVIIYA
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 LIFLLGVIGNVLVLVILERHRQTRSSTETFLFHLAVADLLLVFILPFAVAEGSVGWVLGT
:.:::...:: ::.... : :: :...:..::.::::... ::. .: ::..::
XP_016 LVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASKVNGWIFGT
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 FLCKTVIALHKVNFYCSSLLLACIAVDRYLAIVHAVHAYRHRRLLSIHITCGTIWLVGFL
::::.: :..:::: . ::::::.::::::::::... ..: : ... : .:: ...:
XP_016 FLCKVVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQKRYL-VKFICLSIWGLSLL
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 LALPEILFAKVSQGHHNNSLPRCTFSQENQAETHAW-FTSRFLYHVAGFLLPMLVMGWCY
:::: .:: .. . .: : : .. :. : : . :.: . ::..:.:.: .::
XP_016 LALPVLLFRRTV--YSSNVSPACYEDMGNN--TANWRMLLRILPQSFGFIVPLLIMLFCY
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 VGVVHRLRQAQRRPQRQKAVRVAILVTSIFFLCWSPYHIVIFLDTLARLKAVDNTCKLNG
... : .:. :...:.:: . :. ::.::: ::..:.. ::: : .....::. .
XP_016 GFTLRTLFKAHM-GQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQETCERRN
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB8 SLPVAITMCEFLGLAHCCLNPMLYTFAGVKFRSDLSRLLTKLGCTGPASLCQLFPSWRRS
. :. :.::. : ::::..:.: : ::: : ..:. : . :: :. :
XP_016 HIDRALDATEILGILHSCLNPLIYAFIGQKFRHGLLKILAIHGLISKDSL----PKDSRP
300 310 320 330 340
360 370
pF1KB8 SLSESENATSLTTF
:. : .. . ::.
XP_016 SFVGSSSGHTSTTL
350 360
>>NP_001548 (OMIM: 146928) C-X-C chemokine receptor type (360 aa)
initn: 777 init1: 372 opt: 804 Z-score: 759.0 bits: 149.0 E(85289): 1.5e-35
Smith-Waterman score: 810; 38.3% identity (68.5% similar) in 368 aa overlap (7-372:4-360)
10 20 30 40 50
pF1KB8 MNYPLTLEMDLENLEDLFWELDRLDNYNDTSLVENHLCPATEG-PLMASFKAVFVPVAYS
..:. ...:: ::. . :.::. .: . : :. : .. :: . :.
NP_001 MEDFNMESDSFED-FWKGEDLSNYSYSSTLPPFLLDAAPCEPESLEINKYFVVIIYA
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 LIFLLGVIGNVLVLVILERHRQTRSSTETFLFHLAVADLLLVFILPFAVAEGSVGWVLGT
:.:::...:: ::.... : :: :...:..::.::::... ::. .: ::..::
NP_001 LVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASKVNGWIFGT
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 FLCKTVIALHKVNFYCSSLLLACIAVDRYLAIVHAVHAYRHRRLLSIHITCGTIWLVGFL
::::.: :..:::: . ::::::.::::::::::... ..: : ... : .:: ...:
NP_001 FLCKVVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQKRYL-VKFICLSIWGLSLL
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 LALPEILFAKVSQGHHNNSLPRCTFSQENQAETHAW-FTSRFLYHVAGFLLPMLVMGWCY
:::: .:: .. . .: : : .. :. : : . :.: . ::..:.:.: .::
NP_001 LALPVLLFRRTV--YSSNVSPACYEDMGNN--TANWRMLLRILPQSFGFIVPLLIMLFCY
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 VGVVHRLRQAQRRPQRQKAVRVAILVTSIFFLCWSPYHIVIFLDTLARLKAVDNTCKLNG
... : .:. :...:.:: . :. ::.::: ::..:.. ::: : .....::. .
NP_001 GFTLRTLFKAHM-GQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQETCERRN
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB8 SLPVAITMCEFLGLAHCCLNPMLYTFAGVKFRSDLSRLLTKLGCTGPASLCQLFPSWRRS
. :. :.::. : ::::..:.: : ::: : ..:. : . :: :. :
NP_001 HIDRALDATEILGILHSCLNPLIYAFIGQKFRHGLLKILAIHGLISKDSL----PKDSRP
300 310 320 330 340
360 370
pF1KB8 SLSESENATSLTTF
:. : .. . ::.
NP_001 SFVGSSSGHTSTTL
350 360
372 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:47:10 2016 done: Fri Nov 4 16:47:11 2016
Total Scan time: 7.530 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]