FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8961, 342 aa
  1>>>pF1KB8961 342 - 342 aa - 342 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.8696+/-0.000944; mu= 0.5927+/- 0.057
 mean_var=431.7524+/-90.092, 0's: 0 Z-trim(117.8): 82  B-trim: 182 in 1/52
 Lambda= 0.061724
 statistics sampled from 18572 (18656) to 18572 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.831), E-opt: 0.2 (0.573), width:  16
 Scan time:  3.350

The best scores are:                                      opt bits E(32554)
CCDS2267.2 HOXD9 gene_id:3235|Hs108|chr2           ( 352) 2363 223.7 1.8e-58


>>CCDS2267.2 HOXD9 gene_id:3235|Hs108|chr2                (352 aa)
 initn: 2363 init1: 2363 opt: 2363  Z-score: 1163.4  bits: 223.7 E(32554): 1.8e-58
Smith-Waterman score: 2363; 100.0% identity (100.0% similar) in 342 aa overlap (1-342:11-352)

                         10        20        30        40        50
pF1KB8           MSSSGTLSNYYVDSLIGHEGDEVFAARFGPPGPGAQGRPAGVADGPAATA
                 ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 MLGGSAGRLKMSSSGTLSNYYVDSLIGHEGDEVFAARFGPPGPGAQGRPAGVADGPAATA
               10        20        30        40        50        60

               60        70        80        90       100       110
pF1KB8 AEFASCSFAPRSAVFSASWSAVPSQPPAAAAMSGLYHPYVPPPPLAASASEPGRYVRSWM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 AEFASCSFAPRSAVFSASWSAVPSQPPAAAAMSGLYHPYVPPPPLAASASEPGRYVRSWM
               70        80        90       100       110       120

              120       130       140       150       160       170
pF1KB8 EPLPGFPGGAGGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPETRAAPAPATAASTTSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 EPLPGFPGGAGGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPETRAAPAPATAASTTSSS
              130       140       150       160       170       180

              180       190       200       210       220       230
pF1KB8 STSLSSSSKRTECSVARESQGSSGPEFSCNSFLQEKAAAATGGTGPGAGIGAATGTGGSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 STSLSSSSKRTECSVARESQGSSGPEFSCNSFLQEKAAAATGGTGPGAGIGAATGTGGSS
              190       200       210       220       230       240

              240       250       260       270       280       290
pF1KB8 EPSACSDHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTRKKRCPYTKYQTLEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 EPSACSDHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTRKKRCPYTKYQTLEL
              250       260       270       280       290       300

              300       310       320       330       340  
pF1KB8 EKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEKCPKGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 EKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEKCPKGD
              310       320       330       340       350  




342 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:49:05 2016 done: Sat Nov  5 00:49:06 2016
 Total Scan time:  3.350 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]