Result of FASTA (ccds) for
pF1KB8958
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8958, 335 aa
1>>>pF1KB8958 335 - 335 aa - 335 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.0117+/-0.000789; mu= 9.7228+/- 0.048
mean_var=153.2191+/-32.316, 0's: 0 Z-trim(113.2): 176 B-trim: 858 in 3/51
Lambda= 0.103614
statistics sampled from 13679 (13868) to 13679 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.426), width: 16
Scan time: 2.970
The best scores are: opt bits E(32554)
CCDS5401.1 HOXA1 gene_id:3198|Hs108|chr7 ( 335) 2307 356.2 2.2e-98
CCDS5402.2 HOXA1 gene_id:3198|Hs108|chr7 ( 137) 836 135.9 1.8e-32
CCDS32675.1 HOXB1 gene_id:3211|Hs108|chr17 ( 301) 625 104.7 1e-22
CCDS2271.1 HOXD1 gene_id:3231|Hs108|chr2 ( 328) 525 89.8 3.4e-18
>>CCDS5401.1 HOXA1 gene_id:3198|Hs108|chr7 (335 aa)
initn: 2307 init1: 2307 opt: 2307 Z-score: 1879.6 bits: 356.2 E(32554): 2.2e-98
Smith-Waterman score: 2307; 99.7% identity (100.0% similar) in 335 aa overlap (1-335:1-335)
10 20 30 40 50 60
pF1KB8 MDNARMNSFLEYPILSSGDSGTCSARAYPSDHRITTFQSCAVSANSCGGDDRFLVGRGVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MDNARMNSFLEYPILSSGDSGTCSARAYPSDHRITTFQSCAVSANSCGGDDRFLVGRGVQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 IGSPHHHHHHHHHHPQPATYQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALNQEADVS
::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 IGSPHHHHHHHHRHPQPATYQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALNQEADVS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 GGYPQCAPAVYSGNLSSPMVQHHHHHQGYAGGAVGSPQYIHHSYGQEHQSLALATYNNSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GGYPQCAPAVYSGNLSSPMVQHHHHHQGYAGGAVGSPQYIHHSYGQEHQSLALATYNNSL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 SPLHASHQEACRSPASETSSPAQTFDWMKVKRNPPKTGKVGEYGYLGQPNAVRTNFTTKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SPLHASHQEACRSPASETSSPAQTFDWMKVKRNPPKTGKVGEYGYLGQPNAVRTNFTTKQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 LTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPISPATP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPISPATP
250 260 270 280 290 300
310 320 330
pF1KB8 PGNDEKAEESSEKSSSSPCVPSPGSSTSDTLTTSH
:::::::::::::::::::::::::::::::::::
CCDS54 PGNDEKAEESSEKSSSSPCVPSPGSSTSDTLTTSH
310 320 330
>>CCDS5402.2 HOXA1 gene_id:3198|Hs108|chr7 (137 aa)
initn: 836 init1: 836 opt: 836 Z-score: 696.3 bits: 135.9 E(32554): 1.8e-32
Smith-Waterman score: 836; 99.2% identity (100.0% similar) in 118 aa overlap (1-118:1-118)
10 20 30 40 50 60
pF1KB8 MDNARMNSFLEYPILSSGDSGTCSARAYPSDHRITTFQSCAVSANSCGGDDRFLVGRGVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MDNARMNSFLEYPILSSGDSGTCSARAYPSDHRITTFQSCAVSANSCGGDDRFLVGRGVQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 IGSPHHHHHHHHHHPQPATYQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALNQEADVS
::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::
CCDS54 IGSPHHHHHHHHRHPQPATYQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALNQEADPP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 GGYPQCAPAVYSGNLSSPMVQHHHHHQGYAGGAVGSPQYIHHSYGQEHQSLALATYNNSL
CCDS54 RSLSLPRIGDIFSSADF
130
>>CCDS32675.1 HOXB1 gene_id:3211|Hs108|chr17 (301 aa)
initn: 614 init1: 377 opt: 625 Z-score: 521.4 bits: 104.7 E(32554): 1e-22
Smith-Waterman score: 731; 45.9% identity (67.1% similar) in 340 aa overlap (1-328:1-301)
10 20 30 40 50
pF1KB8 MDNARMNSFLEYPILSSGDSGTCSARAYPSDHRITTFQ-SCAVSANSCGGDDRFLVGRGV
:: :::::::::. . : :. ::.. : :.: : : ...: ... :. : :
CCDS32 MDYNRMNSFLEYPLCNRGPSAY-SAHSAP-----TSFPPSSAQAVDSYASEGRY--GGG-
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 QIGSPHHHHHHHHHHPQPAT-----YQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALN
..:: ... . :: . . .:. : :. ..:.:::: : . : :.
CCDS32 -LSSPAFQQNSGYPAQQPPSTLGVPFPSSAPSG--YAPAACSPSYG------PSQYYPLG
60 70 80 90 100
120 130 140 150 160 170
pF1KB8 Q-EADVSGGYPQCAPAVYSGNLSSPMVQHHHHHQGYAGGAVGSPQYI--HHSYGQEHQSL
: :.: ::: . :. :...:.. .::..:..: : : ::.:. .
CCDS32 QSEGD--GGYFH--PSSYGAQLGG-------LSDGYGAGGAGPGPYPPQHPPYGNEQTAS
110 120 130 140 150
180 190 200 210 220 230
pF1KB8 ALATYNNSLSPLHASHQEACRSPASETSSP-AQTFDWMKVKRNPPKTGKVGEYGYLGQPN
.: . :: ... : : :: ..: :.::::::::::::::.::.: : ::.:.
CCDS32 FAPAYADLLS---EDKETPC--P-SEPNTPTARTFDWMKVKRNPPKTAKVSEPG-LGSPS
160 170 180 190 200
240 250 260 270 280 290
pF1KB8 AVRTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKE
..::::::.:::::::::::::::.:::::::::.:.:::::::::::::::::::::.:
CCDS32 GLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE
210 220 230 240 250 260
300 310 320 330
pF1KB8 -GLLPISPATPPGND-EKAEESSEKSSSSPCVPSPGSSTSDTLTTSH
: .: :: ::: : : ..:..:. . ::.: ::
CCDS32 EGRVP--PA-PPGCPKEAAGDASDQSTCTSPEASPSSVTS
270 280 290 300
>>CCDS2271.1 HOXD1 gene_id:3231|Hs108|chr2 (328 aa)
initn: 535 init1: 499 opt: 525 Z-score: 440.1 bits: 89.8 E(32554): 3.4e-18
Smith-Waterman score: 535; 37.0% identity (58.7% similar) in 341 aa overlap (6-328:1-328)
10 20 30 40 50
pF1KB8 MDNARMNSFLEYPILSS-----GDSGTCSARAYPSDHRITTFQSCAVSANSCGGDDRFLV
:.:.::: :: :: . . . :: : ...: .: :: :.
CCDS22 MSSYLEYVSCSSSGGVGGDVLSLAPKFCRSDARPVALQPAFPLGN---GDGAFVS
10 20 30 40 50
60 70 80 90 100
pF1KB8 GRGVQIGSPHHHHHHHHHHPQ---PATYQTS-----GNL--GVSYSHSSCGPSYGSQNFS
. . : .:. ::. : . : :.. . .. : .:: . .
CCDS22 CLPLAAARPSPSPPAAPARPSVPPPAAPQYAQCTLEGAYEPGAAPAAAAGGADYGFLGSG
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB8 APYS-PYALNQEADVSGGYPQCAP-AVYSGNLSSPMVQHHHHHQGYAGGAVGS-PQYIHH
:. : .:.. :: .:.. . : ::.::. .: ... . . .. : : : ..
CCDS22 PAYDFPGVLGRAADDGGSHVHYATSAVFSGG-GSFLLSGQVDYAAF--GEPGPFPACLKA
120 130 140 150 160
170 180 190 200 210 220
pF1KB8 SYGQEHQSLALATYNNSLSPLHASHQEACRSPASETSSPAQTFDWMKVKRNPPKTGKVGE
: . .. : :: ... .. :::: . .::.::::::: : ::..:
CCDS22 SADGHPGAFQTA------SPAPGTYPKSV-SPASGLPAAFSTFEWMKVKRNASKKGKLAE
170 180 190 200 210 220
230 240 250 260 270 280
pF1KB8 YGYLGQPNAVRTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRM
:: . .:.::::.::::::::::::::::::::::.::: :.::.::::::::::::
CCDS22 YGAASPSSAIRTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLHLNDTQVKIWFQNRRM
230 240 250 260 270 280
290 300 310 320 330
pF1KB8 KQKKREKEGLLPISPATPPGNDEKAEESSEKSSSSPCVPSPGSSTSDTLTTSH
::::::.:::: . . : . . . : ..: :: .. :
CCDS22 KQKKREREGLLATAIPVAPLQLPLSGTTPTKFIKNPGSPSQSQEPS
290 300 310 320
335 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:40:54 2016 done: Fri Nov 4 16:40:54 2016
Total Scan time: 2.970 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]